RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 NTMT1Q9BV86 223 aa13.82□□□□□ -0.2
USP28-204ENST00000537642 ZNF717Q9BY31 904 aaPredicted RBP13.82□□□□□ -0.2
USP28-204ENST00000537642 ADAP2Q9NPF8 381 aa13.82□□□□□ -0.2
USP28-204ENST00000537642 ANKRD10Q9NXR5 420 aa13.82□□□□□ -0.2
USP28-204ENST00000537642 ABI3Q9P2A4 366 aa13.82□□□□□ -0.2
USP28-204ENST00000537642 FETUBQ9UGM5 382 aa13.82□□□□□ -0.2
USP28-204ENST00000537642 ZNF223Q9UK11 482 aaPredicted RBP13.82□□□□□ -0.2
USP28-204ENST00000537642 FBXW2Q9UKT8 454 aa13.82□□□□□ -0.2
USP28-204ENST00000537642 PPIEQ9UNP9 301 aaKnown RBP13.82□□□□□ -0.2
USP28-204ENST00000537642 LDB3O75112 727 aa13.81□□□□□ -0.2
USP28-204ENST00000537642 AGFG2O95081 481 aa13.81□□□□□ -0.2
USP28-204ENST00000537642 ETHE1O95571 254 aa13.81□□□□□ -0.2
USP28-204ENST00000537642 RPS17P08708 135 aaKnown RBP13.81□□□□□ -0.2
USP28-204ENST00000537642 EDN3P14138 238 aa13.81□□□□□ -0.2
USP28-204ENST00000537642 PTX3P26022 381 aaPredicted RBP13.81□□□□□ -0.2
USP28-204ENST00000537642 GPR143P51810 404 aa13.81□□□□□ -0.2
USP28-204ENST00000537642 NEK2P51955 445 aa13.81□□□□□ -0.2
USP28-204ENST00000537642 RAP1GDS1P52306 607 aa13.81□□□□□ -0.2
USP28-204ENST00000537642 MLF1P58340 268 aa13.81□□□□□ -0.2
USP28-204ENST00000537642 PHEXP78562 749 aa13.81□□□□□ -0.2
USP28-204ENST00000537642 TRAF3Q13114 568 aa13.81□□□□□ -0.2
USP28-204ENST00000537642 SLAMF1Q13291 335 aa13.81□□□□□ -0.2
USP28-204ENST00000537642 OR1C1Q15619 314 aa13.81□□□□□ -0.2
USP28-204ENST00000537642 ZNF766Q5HY98 468 aa13.81□□□□□ -0.2
USP28-204ENST00000537642 ZNF468Q5VIY5 522 aaPredicted RBP13.81□□□□□ -0.2
USP28-204ENST00000537642 MZB1Q8WU39 189 aa13.81□□□□□ -0.2
USP28-204ENST00000537642 ATP6V1E2Q96A05 226 aa13.81□□□□□ -0.2
USP28-204ENST00000537642 UTP23Q9BRU9 249 aaKnown RBP13.81□□□□□ -0.2
USP28-204ENST00000537642 CENPKQ9BS16 269 aa13.81□□□□□ -0.2
USP28-204ENST00000537642 ALOXE3Q9BYJ1 711 aa13.81□□□□□ -0.2
USP28-204ENST00000537642 OLAHQ9NV23 265 aa13.81□□□□□ -0.2
USP28-204ENST00000537642 PSD3Q9NYI0 1048 aa13.81□□□□□ -0.2
USP28-204ENST00000537642 TMEM216Q9P0N5 145 aa13.81□□□□□ -0.2
USP28-204ENST00000537642 PSMC3IPQ9P2W1 217 aaPredicted RBP13.81□□□□□ -0.2
USP28-204ENST00000537642 ICE1Q9Y2F5 2266 aa13.81□□□□□ -0.2
USP28-204ENST00000537642 SPTAN1Q13813 2472 aaKnown RBP13.8□□□□□ -0.2
USP28-204ENST00000537642 TRBV11-1A0A0K0K1C0 115 aa13.8□□□□□ -0.2
USP28-204ENST00000537642 IQANK1A0A1B0GTG1 560 aa13.8□□□□□ -0.2
USP28-204ENST00000537642 A0A1B0GTL3 188 aa13.8□□□□□ -0.2
USP28-204ENST00000537642 BLACEA4D250 179 aa13.8□□□□□ -0.2
USP28-204ENST00000537642 GOLGA8RI6L899 631 aa13.8□□□□□ -0.2
USP28-204ENST00000537642 FOXE1O00358 373 aaPredicted RBP13.8□□□□□ -0.2
USP28-204ENST00000537642 PPP6CO00743 305 aa13.8□□□□□ -0.2
USP28-204ENST00000537642 RASAL1O95294 804 aa13.8□□□□□ -0.2
USP28-204ENST00000537642 RNF224P0DH78 156 aa13.8□□□□□ -0.2
USP28-204ENST00000537642 CPN2P22792 545 aa13.8□□□□□ -0.2
USP28-204ENST00000537642 TPP2P29144 1249 aaPredicted RBP13.8□□□□□ -0.2
USP28-204ENST00000537642 BSGP35613 385 aa13.8□□□□□ -0.2
USP28-204ENST00000537642 ARL1P40616 181 aaPredicted RBP13.8□□□□□ -0.2
USP28-204ENST00000537642 CLCN2P51788 898 aa13.8□□□□□ -0.2
USP28-204ENST00000537642 TDGF1P3P51864 188 aa13.8□□□□□ -0.2
USP28-204ENST00000537642 ARFIP1P53367 373 aa13.8□□□□□ -0.2
USP28-204ENST00000537642 HNRNPH2P55795 449 aaKnown RBP13.8□□□□□ -0.2
USP28-204ENST00000537642 PMP22Q01453 160 aa13.8□□□□□ -0.2
USP28-204ENST00000537642 STX4Q12846 297 aa13.8□□□□□ -0.2
USP28-204ENST00000537642 CUL3Q13618 768 aa13.8□□□□□ -0.2
USP28-204ENST00000537642 ELOAQ14241 798 aaKnown RBP13.8□□□□□ -0.2
USP28-204ENST00000537642 ELAVL1Q15717 326 aaKnown RBP13.8□□□□□ -0.2
USP28-204ENST00000537642 SPINK14Q6IE38 97 aa13.8□□□□□ -0.2
USP28-204ENST00000537642 ARMC10Q8N2F6 343 aa13.8□□□□□ -0.2
USP28-204ENST00000537642 ZCCHC7Q8N3Z6 543 aaKnown RBP13.8□□□□□ -0.2
USP28-204ENST00000537642 ZNF483Q8TF39 744 aaPredicted RBP13.8□□□□□ -0.2
USP28-204ENST00000537642 NR4A3Q92570 626 aa13.8□□□□□ -0.2
USP28-204ENST00000537642 NCLNQ969V3 563 aa13.8□□□□□ -0.2
USP28-204ENST00000537642 ANKRD9Q96BM1 317 aaPredicted RBP13.8□□□□□ -0.2
USP28-204ENST00000537642 MTFMTQ96DP5 389 aaKnown RBP13.8□□□□□ -0.2
USP28-204ENST00000537642 VMP1Q96GC9 406 aa13.8□□□□□ -0.2
USP28-204ENST00000537642 C1QTNF3Q9BXJ4 246 aa13.8□□□□□ -0.2
USP28-204ENST00000537642 HES7Q9BYE0 225 aa13.8□□□□□ -0.2
USP28-204ENST00000537642 DEFB126Q9BYW3 111 aa13.8□□□□□ -0.2
USP28-204ENST00000537642 SEMA4BQ9NPR2 832 aaPredicted RBP13.8□□□□□ -0.2
USP28-204ENST00000537642 VTI1BQ9UEU0 232 aa13.8□□□□□ -0.2
USP28-204ENST00000537642 TBK1Q9UHD2 729 aa13.8□□□□□ -0.2
USP28-204ENST00000537642 PPT2Q9UMR5 302 aa13.8□□□□□ -0.2
USP28-204ENST00000537642 PCDHGB6Q9Y5F9 930 aa13.8□□□□□ -0.2
USP28-204ENST00000537642 SPACA6W5XKT8 324 aa13.8□□□□□ -0.2
USP28-204ENST00000537642 USP9YO00507 2555 aaPredicted RBP13.8□□□□□ -0.2
USP28-204ENST00000537642 SPTBN1Q01082 2364 aaKnown RBP13.8□□□□□ -0.2
USP28-204ENST00000537642 A0A0A6YYD5 115 aa13.79□□□□□ -0.2
USP28-204ENST00000537642 SYNDIG1LA6NDD5 238 aa13.79□□□□□ -0.2
USP28-204ENST00000537642 PRKNO60260 465 aaPredicted RBP13.79□□□□□ -0.2
USP28-204ENST00000537642 EEDO75530 441 aaKnown RBP13.79□□□□□ -0.2
USP28-204ENST00000537642 NEURL1O76050 574 aa13.79□□□□□ -0.2
USP28-204ENST00000537642 SHBGP04278 402 aa13.79□□□□□ -0.2
USP28-204ENST00000537642 IFNA16P05015 189 aa13.79□□□□□ -0.2
USP28-204ENST00000537642 TSPAN8P19075 237 aa13.79□□□□□ -0.2
USP28-204ENST00000537642 TNFRSF8P28908 595 aa13.79□□□□□ -0.2
USP28-204ENST00000537642 CDH13P55290 713 aa13.79□□□□□ -0.2
USP28-204ENST00000537642 ID2Q02363 134 aa13.79□□□□□ -0.2
USP28-204ENST00000537642 OC90Q02509 493 aaPredicted RBP13.79□□□□□ -0.2
USP28-204ENST00000537642 SRSF11Q05519 484 aaKnown RBP13.79□□□□□ -0.2
USP28-204ENST00000537642 SERTAD2Q14140 314 aa13.79□□□□□ -0.2
USP28-204ENST00000537642 GGTA1PQ4G0N0 100 aa13.79□□□□□ -0.2
USP28-204ENST00000537642 FAM219BQ5XKK7 198 aa13.79□□□□□ -0.2
USP28-204ENST00000537642 FRG2Q64ET8 278 aa13.79□□□□□ -0.2
USP28-204ENST00000537642 C18orf63Q68DL7 685 aa13.79□□□□□ -0.2
USP28-204ENST00000537642 MRM1Q6IN84 353 aaKnown RBP13.79□□□□□ -0.2
USP28-204ENST00000537642 MILR1Q7Z6M3 343 aa13.79□□□□□ -0.2
USP28-204ENST00000537642 GPR180Q86V85 440 aa13.79□□□□□ -0.2
USP28-204ENST00000537642 LCA5Q86VQ0 697 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 60.3 ms