RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 C1GALT1C1LP0DN25 315 aa11.35□□□□□ -0.59
CLIP1-208ENST00000537004 PRPS1L1P21108 318 aa11.35□□□□□ -0.59
CLIP1-208ENST00000537004 SLBPQ14493 270 aaKnown RBP eCLIP11.35□□□□□ -0.59
CLIP1-208ENST00000537004 KCNAB1Q14722 419 aa11.35□□□□□ -0.59
CLIP1-208ENST00000537004 RBBP5Q15291 538 aaKnown RBP11.35□□□□□ -0.59
CLIP1-208ENST00000537004 TBCELQ5QJ74 424 aa11.35□□□□□ -0.59
CLIP1-208ENST00000537004 THEMIS2Q5TEJ8 643 aa11.35□□□□□ -0.59
CLIP1-208ENST00000537004 TMEM164Q5U3C3 297 aa11.35□□□□□ -0.59
CLIP1-208ENST00000537004 APLFQ8IW19 511 aaPredicted RBP11.35□□□□□ -0.59
CLIP1-208ENST00000537004 ADGRG5Q8IZF4 528 aa11.35□□□□□ -0.59
CLIP1-208ENST00000537004 OR5K2Q8NHB8 316 aa11.35□□□□□ -0.59
CLIP1-208ENST00000537004 DNAJB8Q8NHS0 232 aa11.35□□□□□ -0.59
CLIP1-208ENST00000537004 SLC5A11Q8WWX8 675 aa11.35□□□□□ -0.59
CLIP1-208ENST00000537004 PPWD1Q96BP3 646 aaKnown RBP11.35□□□□□ -0.59
CLIP1-208ENST00000537004 C11orf24Q96F05 449 aaPredicted RBP11.35□□□□□ -0.59
CLIP1-208ENST00000537004 BTBD9Q96Q07 612 aa11.35□□□□□ -0.59
CLIP1-208ENST00000537004 FERD3LQ96RJ6 166 aa11.35□□□□□ -0.59
CLIP1-208ENST00000537004 MAP3K3Q99759 626 aa11.35□□□□□ -0.59
CLIP1-208ENST00000537004 THUMPD3Q9BV44 507 aaKnown RBP11.35□□□□□ -0.59
CLIP1-208ENST00000537004 EHD1Q9H4M9 534 aa11.35□□□□□ -0.59
CLIP1-208ENST00000537004 XKR8Q9H6D3 395 aa11.35□□□□□ -0.59
CLIP1-208ENST00000537004 RMND5AQ9H871 391 aa11.35□□□□□ -0.59
CLIP1-208ENST00000537004 SERHLQ9NQF3 203 aa11.35□□□□□ -0.59
CLIP1-208ENST00000537004 SIDT1Q9NXL6 827 aaKnown RBP11.35□□□□□ -0.59
CLIP1-208ENST00000537004 MAN2B2Q9Y2E5 1009 aa11.35□□□□□ -0.59
CLIP1-208ENST00000537004 SSUH2Q9Y2M2 353 aa11.35□□□□□ -0.59
CLIP1-208ENST00000537004 BSNQ9UPA5 3926 aa11.35□□□□□ -0.59
CLIP1-208ENST00000537004 A0A096LPI6 279 aa11.35□□□□□ -0.59
CLIP1-208ENST00000537004 TRBV5-3A0A0A0MS03 114 aa11.35□□□□□ -0.59
CLIP1-208ENST00000537004 TCRBV5S2A0A599 114 aa11.35□□□□□ -0.59
CLIP1-208ENST00000537004 PIPSLA2A3N6 862 aa11.35□□□□□ -0.59
CLIP1-208ENST00000537004 A6NHS1 94 aa11.35□□□□□ -0.59
CLIP1-208ENST00000537004 B4E171 279 aa11.35□□□□□ -0.59
CLIP1-208ENST00000537004 AKAP10O43572 662 aa11.35□□□□□ -0.59
CLIP1-208ENST00000537004 PRMT3O60678 531 aa11.35□□□□□ -0.59
CLIP1-208ENST00000537004 SH3BGRLO75368 114 aa11.35□□□□□ -0.59
CLIP1-208ENST00000537004 ERN1O75460 977 aaKnown RBP11.35□□□□□ -0.59
CLIP1-208ENST00000537004 MYO1DO94832 1006 aa11.35□□□□□ -0.59
CLIP1-208ENST00000537004 GPIP06744 558 aa11.35□□□□□ -0.59
CLIP1-208ENST00000537004 LIPCP11150 499 aa11.35□□□□□ -0.59
CLIP1-208ENST00000537004 POLR2CP19387 275 aaPredicted RBP11.35□□□□□ -0.59
CLIP1-208ENST00000537004 WT1P19544 449 aaPredicted RBP11.35□□□□□ -0.59
CLIP1-208ENST00000537004 IL10P22301 178 aa11.35□□□□□ -0.59
CLIP1-208ENST00000537004 HRH2P25021 359 aa11.35□□□□□ -0.59
CLIP1-208ENST00000537004 TSPAN7P41732 249 aa11.35□□□□□ -0.59
CLIP1-208ENST00000537004 RPS13P62277 151 aaKnown RBP11.35□□□□□ -0.59
CLIP1-208ENST00000537004 MC2RQ01718 297 aa11.35□□□□□ -0.59
CLIP1-208ENST00000537004 SF1Q15637 639 aaKnown RBP11.35□□□□□ -0.59
CLIP1-208ENST00000537004 CYP51A1Q16850 503 aa11.35□□□□□ -0.59
CLIP1-208ENST00000537004 GTDC1Q4AE62 458 aa11.35□□□□□ -0.59
CLIP1-208ENST00000537004 PAGE2BQ5JRK9 111 aa11.35□□□□□ -0.59
CLIP1-208ENST00000537004 DCAF12Q5T6F0 453 aa11.35□□□□□ -0.59
CLIP1-208ENST00000537004 PRAMEF13Q5VWM6 474 aa11.35□□□□□ -0.59
CLIP1-208ENST00000537004 HMBOX1Q6NT76 420 aa11.35□□□□□ -0.59
CLIP1-208ENST00000537004 NXPE4Q6UWF7 544 aa11.35□□□□□ -0.59
CLIP1-208ENST00000537004 GPR180Q86V85 440 aa11.35□□□□□ -0.59
CLIP1-208ENST00000537004 ANKRD46Q86W74 232 aa11.35□□□□□ -0.59
CLIP1-208ENST00000537004 DTX1Q86Y01 620 aa11.35□□□□□ -0.59
CLIP1-208ENST00000537004 C1orf52Q8N6N3 182 aaKnown RBP11.35□□□□□ -0.59
CLIP1-208ENST00000537004 EME1Q96AY2 570 aa11.35□□□□□ -0.59
CLIP1-208ENST00000537004 ZDHHC12Q96GR4 267 aa11.35□□□□□ -0.59
CLIP1-208ENST00000537004 ITCHQ96J02 903 aa11.35□□□□□ -0.59
CLIP1-208ENST00000537004 ZNF583Q96ND8 569 aa11.35□□□□□ -0.59
CLIP1-208ENST00000537004 NR1H4Q96RI1 486 aaPredicted RBP11.35□□□□□ -0.59
CLIP1-208ENST00000537004 SH3GL1Q99961 368 aa11.35□□□□□ -0.59
CLIP1-208ENST00000537004 PAIP1Q9H074 479 aaKnown RBP11.35□□□□□ -0.59
CLIP1-208ENST00000537004 IKZF5Q9H5V7 419 aa11.35□□□□□ -0.59
CLIP1-208ENST00000537004 RPF2Q9H7B2 306 aaKnown RBP11.35□□□□□ -0.59
CLIP1-208ENST00000537004 SLC6A13Q9NSD5 602 aa11.35□□□□□ -0.59
CLIP1-208ENST00000537004 ETAA1Q9NY74 926 aa11.35□□□□□ -0.59
CLIP1-208ENST00000537004 MAGEL2Q9UJ55 1249 aa11.35□□□□□ -0.59
CLIP1-208ENST00000537004 PCDHB14Q9Y5E9 798 aa11.35□□□□□ -0.59
CLIP1-208ENST00000537004 SDK2Q58EX2 2172 aa11.34□□□□□ -0.59
CLIP1-208ENST00000537004 OR5K3A6NET4 321 aa11.34□□□□□ -0.59
CLIP1-208ENST00000537004 HNRNPRO43390 633 aaKnown RBP11.34□□□□□ -0.59
CLIP1-208ENST00000537004 AHCYL1O43865 530 aa11.34□□□□□ -0.59
CLIP1-208ENST00000537004 B3GALT4O96024 378 aa11.34□□□□□ -0.59
CLIP1-208ENST00000537004 FESP07332 822 aa11.34□□□□□ -0.59
CLIP1-208ENST00000537004 ANKRD34CP0C6C1 535 aa11.34□□□□□ -0.59
CLIP1-208ENST00000537004 KIR3DL1P43629 444 aa11.34□□□□□ -0.59
CLIP1-208ENST00000537004 RAE1P78406 368 aaKnown RBP11.34□□□□□ -0.59
CLIP1-208ENST00000537004 HIST2H2ACQ16777 129 aaPredicted RBP11.34□□□□□ -0.59
CLIP1-208ENST00000537004 DPY19L1Q2PZI1 675 aa11.34□□□□□ -0.59
CLIP1-208ENST00000537004 SPIN4Q56A73 249 aa11.34□□□□□ -0.59
CLIP1-208ENST00000537004 RUNDC3AQ59EK9 446 aa11.34□□□□□ -0.59
CLIP1-208ENST00000537004 MTX3Q5HYI7 312 aa11.34□□□□□ -0.59
CLIP1-208ENST00000537004 LRIF1Q5T3J3 769 aa11.34□□□□□ -0.59
CLIP1-208ENST00000537004 C10orf62Q5T681 223 aaPredicted RBP11.34□□□□□ -0.59
CLIP1-208ENST00000537004 BROXQ5VW32 411 aa11.34□□□□□ -0.59
CLIP1-208ENST00000537004 HIST2H2AA3Q6FI13 130 aa11.34□□□□□ -0.59
CLIP1-208ENST00000537004 OR4F3Q6IEY1 312 aa11.34□□□□□ -0.59
CLIP1-208ENST00000537004 LCTLQ6UWM7 567 aa11.34□□□□□ -0.59
CLIP1-208ENST00000537004 AMIGO2Q86SJ2 522 aa11.34□□□□□ -0.59
CLIP1-208ENST00000537004 LAS2Q8IYD9 372 aa11.34□□□□□ -0.59
CLIP1-208ENST00000537004 DTWD1Q8N5C7 304 aa11.34□□□□□ -0.59
CLIP1-208ENST00000537004 C2orf73Q8N5S3 287 aaPredicted RBP11.34□□□□□ -0.59
CLIP1-208ENST00000537004 OR7A2PQ8NGA2 310 aa11.34□□□□□ -0.59
CLIP1-208ENST00000537004 CHTF18Q8WVB6 975 aa11.34□□□□□ -0.59
CLIP1-208ENST00000537004 OR6C1Q96RD1 312 aa11.34□□□□□ -0.59
CLIP1-208ENST00000537004 CCNL2Q96S94 520 aaPredicted RBP11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms