RNA–Protein interactions for RNA: ENST00000535236.5

SFSWAP-203, Transcript of splicing factor SWAP, humanhuman

TSL 1 (best)

Gene SFSWAP, Length 5,593 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-203ENST00000535236 DEFA5Q01523 94 aa17.47■□□□□ 0.39
SFSWAP-203ENST00000535236 MSS51Q4VC12 460 aa17.47■□□□□ 0.39
SFSWAP-203ENST00000535236 RAB12Q6IQ22 244 aa17.47■□□□□ 0.39
SFSWAP-203ENST00000535236 PLEKHG7Q6ZR37 379 aa17.47■□□□□ 0.39
SFSWAP-203ENST00000535236 SPAG16Q8N0X2 631 aa17.47■□□□□ 0.39
SFSWAP-203ENST00000535236 ZNF709Q8N972 641 aa17.47■□□□□ 0.39
SFSWAP-203ENST00000535236 KCNN1Q92952 543 aa17.47■□□□□ 0.39
SFSWAP-203ENST00000535236 HSPA12BQ96MM6 686 aa17.47■□□□□ 0.39
SFSWAP-203ENST00000535236 TREM1Q9NP99 234 aa17.47■□□□□ 0.39
SFSWAP-203ENST00000535236 FLRT2O43155 660 aa17.47■□□□□ 0.39
SFSWAP-203ENST00000535236 OR2B3O76000 313 aa17.47■□□□□ 0.39
SFSWAP-203ENST00000535236 SLC18A1P54219 525 aa17.47■□□□□ 0.39
SFSWAP-203ENST00000535236 RPS3AP61247 264 aaKnown RBP17.47■□□□□ 0.39
SFSWAP-203ENST00000535236 TUBA1BP68363 451 aa17.47■□□□□ 0.39
SFSWAP-203ENST00000535236 TUBA4AP68366 448 aa17.47■□□□□ 0.39
SFSWAP-203ENST00000535236 E2F1Q01094 437 aa17.47■□□□□ 0.39
SFSWAP-203ENST00000535236 CDKL4Q5MAI5 379 aa17.47■□□□□ 0.39
SFSWAP-203ENST00000535236 TUBA1AQ71U36 451 aa17.47■□□□□ 0.39
SFSWAP-203ENST00000535236 ZSWIM9Q86XI8 627 aa17.47■□□□□ 0.39
SFSWAP-203ENST00000535236 LRRC20Q8TCA0 184 aa17.47■□□□□ 0.39
SFSWAP-203ENST00000535236 ZNF296Q8WUU4 475 aaPredicted RBP17.47■□□□□ 0.39
SFSWAP-203ENST00000535236 IL23AQ9NPF7 189 aa17.47■□□□□ 0.39
SFSWAP-203ENST00000535236 KCNS2Q9ULS6 477 aa17.47■□□□□ 0.39
SFSWAP-203ENST00000535236 CMAHPQ9Y471 501 aa17.47■□□□□ 0.39
SFSWAP-203ENST00000535236 IL3P08700 152 aa17.47■□□□□ 0.39
SFSWAP-203ENST00000535236 CD9P21926 228 aa17.47■□□□□ 0.39
SFSWAP-203ENST00000535236 S100A2P29034 98 aa17.47■□□□□ 0.39
SFSWAP-203ENST00000535236 TUBA3EQ6PEY2 450 aa17.47■□□□□ 0.39
SFSWAP-203ENST00000535236 SMARCD2Q92925 531 aa17.47■□□□□ 0.39
SFSWAP-203ENST00000535236 ZNF382Q96SR6 550 aa17.47■□□□□ 0.39
SFSWAP-203ENST00000535236 EMC8O43402 210 aa17.47■□□□□ 0.39
SFSWAP-203ENST00000535236 PDYNP01213 254 aa17.47■□□□□ 0.39
SFSWAP-203ENST00000535236 OR1E2P47887 323 aa17.47■□□□□ 0.39
SFSWAP-203ENST00000535236 RPS15P62841 145 aaKnown RBP17.47■□□□□ 0.39
SFSWAP-203ENST00000535236 RING1Q06587 406 aa17.47■□□□□ 0.39
SFSWAP-203ENST00000535236 SLAMF1Q13291 335 aa17.47■□□□□ 0.39
SFSWAP-203ENST00000535236 ERMP1Q7Z2K6 904 aa17.47■□□□□ 0.39
SFSWAP-203ENST00000535236 ZNF572Q7Z3I7 529 aaPredicted RBP17.47■□□□□ 0.39
SFSWAP-203ENST00000535236 BADQ92934 168 aa17.47■□□□□ 0.39
SFSWAP-203ENST00000535236 PEBP4Q96S96 227 aa17.47■□□□□ 0.39
SFSWAP-203ENST00000535236 PKP2Q99959 881 aa17.47■□□□□ 0.39
SFSWAP-203ENST00000535236 ZNF350Q9GZX5 532 aa17.47■□□□□ 0.39
SFSWAP-203ENST00000535236 OARD1Q9Y530 152 aa17.47■□□□□ 0.39
SFSWAP-203ENST00000535236 TSPAN4O14817 238 aa17.46■□□□□ 0.39
SFSWAP-203ENST00000535236 ATP4BP51164 291 aa17.46■□□□□ 0.39
SFSWAP-203ENST00000535236 NR0B1P51843 470 aaKnown RBP17.46■□□□□ 0.39
SFSWAP-203ENST00000535236 PCLAFQ15004 111 aa17.46■□□□□ 0.39
SFSWAP-203ENST00000535236 DEFB134Q4QY38 66 aa17.46■□□□□ 0.39
SFSWAP-203ENST00000535236 RAET1LQ5VY80 246 aa17.46■□□□□ 0.39
SFSWAP-203ENST00000535236 MEDAGQ5VYS4 303 aa17.46■□□□□ 0.39
SFSWAP-203ENST00000535236 ARSKQ6UWY0 536 aa17.46■□□□□ 0.39
SFSWAP-203ENST00000535236 CARM1Q86X55 608 aa17.46■□□□□ 0.39
SFSWAP-203ENST00000535236 OR51G2Q8NGK0 314 aa17.46■□□□□ 0.39
SFSWAP-203ENST00000535236 AURKBQ96GD4 344 aaPredicted RBP17.46■□□□□ 0.39
SFSWAP-203ENST00000535236 NAA11Q9BSU3 229 aaPredicted RBP17.46■□□□□ 0.39
SFSWAP-203ENST00000535236 STRA6Q9BX79 667 aa17.46■□□□□ 0.39
SFSWAP-203ENST00000535236 RETREG1Q9H6L5 497 aa17.46■□□□□ 0.39
SFSWAP-203ENST00000535236 ZNF395Q9H8N7 513 aaPredicted RBP17.46■□□□□ 0.39
SFSWAP-203ENST00000535236 CREBZFQ9NS37 354 aa17.46■□□□□ 0.39
SFSWAP-203ENST00000535236 PCDH10Q9P2E7 1040 aa17.46■□□□□ 0.39
SFSWAP-203ENST00000535236 GIMAP2Q9UG22 337 aa17.46■□□□□ 0.39
SFSWAP-203ENST00000535236 OR6C70A6NIJ9 312 aa17.46■□□□□ 0.39
SFSWAP-203ENST00000535236 APBB3O95704 486 aa17.46■□□□□ 0.39
SFSWAP-203ENST00000535236 RNH1P13489 461 aaKnown RBP17.46■□□□□ 0.39
SFSWAP-203ENST00000535236 SLC18A2Q05940 514 aa17.46■□□□□ 0.39
SFSWAP-203ENST00000535236 SLC15A3Q8IY34 581 aa17.46■□□□□ 0.39
SFSWAP-203ENST00000535236 LAS2Q8IYD9 372 aa17.46■□□□□ 0.39
SFSWAP-203ENST00000535236 ALDH16A1Q8IZ83 802 aa17.46■□□□□ 0.39
SFSWAP-203ENST00000535236 CSNK1A1LQ8N752 337 aa17.46■□□□□ 0.39
SFSWAP-203ENST00000535236 ZC3H10Q96K80 434 aaKnown RBP17.46■□□□□ 0.39
SFSWAP-203ENST00000535236 WACQ9BTA9 647 aa17.46■□□□□ 0.39
SFSWAP-203ENST00000535236 RNF186Q9NXI6 227 aa17.46■□□□□ 0.39
SFSWAP-203ENST00000535236 GNRHRP30968 328 aa17.46■□□□□ 0.39
SFSWAP-203ENST00000535236 RAB28P51157 221 aa17.46■□□□□ 0.39
SFSWAP-203ENST00000535236 GAS6Q14393 721 aa17.46■□□□□ 0.39
SFSWAP-203ENST00000535236 LRP10Q7Z4F1 713 aa17.46■□□□□ 0.39
SFSWAP-203ENST00000535236 RPF2Q9H7B2 306 aaKnown RBP17.46■□□□□ 0.39
SFSWAP-203ENST00000535236 UNC119BA6NIH7 251 aa17.46■□□□□ 0.39
SFSWAP-203ENST00000535236 SOX2P48431 317 aa17.46■□□□□ 0.39
SFSWAP-203ENST00000535236 RPS15AP62244 130 aaKnown RBP17.46■□□□□ 0.39
SFSWAP-203ENST00000535236 GINS1Q14691 196 aa17.46■□□□□ 0.39
SFSWAP-203ENST00000535236 CNPY1Q3B7I2 92 aa17.46■□□□□ 0.39
SFSWAP-203ENST00000535236 UBE2Q1Q7Z7E8 422 aa17.46■□□□□ 0.39
SFSWAP-203ENST00000535236 ELP5Q8TE02 316 aa17.46■□□□□ 0.39
SFSWAP-203ENST00000535236 CASTOR1Q8WTX7 329 aa17.46■□□□□ 0.39
SFSWAP-203ENST00000535236 FN3KQ9H479 309 aa17.46■□□□□ 0.39
SFSWAP-203ENST00000535236 HSD3B2P26439 372 aa17.45■□□□□ 0.38
SFSWAP-203ENST00000535236 PHTF2Q8N3S3 785 aa17.45■□□□□ 0.38
SFSWAP-203ENST00000535236 TMEM68Q96MH6 324 aa17.45■□□□□ 0.38
SFSWAP-203ENST00000535236 TRIB3Q96RU7 358 aa17.45■□□□□ 0.38
SFSWAP-203ENST00000535236 CCDC86Q9H6F5 360 aaKnown RBP17.45■□□□□ 0.38
SFSWAP-203ENST00000535236 LRRC42Q9Y546 428 aa17.45■□□□□ 0.38
SFSWAP-203ENST00000535236 C1orf226A1L170 272 aa17.45■□□□□ 0.38
SFSWAP-203ENST00000535236 M0R036 132 aa17.45■□□□□ 0.38
SFSWAP-203ENST00000535236 SLC9A3P48764 834 aa17.45■□□□□ 0.38
SFSWAP-203ENST00000535236 FXYD6P3P58550 94 aa17.45■□□□□ 0.38
SFSWAP-203ENST00000535236 ELAVL3Q14576 367 aaKnown RBP17.45■□□□□ 0.38
SFSWAP-203ENST00000535236 MEP1AQ16819 746 aa17.45■□□□□ 0.38
SFSWAP-203ENST00000535236 CHRFAM7AQ494W8 412 aa17.45■□□□□ 0.38
SFSWAP-203ENST00000535236 FAM76BQ5HYJ3 339 aa17.45■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 63.6 ms