RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 C10orf82Q8WW14 230 aa7.03□□□□□ -1.28
CD44-228ENST00000528455 ZCCHC14Q8WYQ9 949 aaKnown RBP7.03□□□□□ -1.28
CD44-228ENST00000528455 RERGQ96A58 199 aaPredicted RBP7.03□□□□□ -1.28
CD44-228ENST00000528455 QRFPRQ96P65 431 aa7.03□□□□□ -1.28
CD44-228ENST00000528455 FCRL4Q96PJ5 515 aa7.03□□□□□ -1.28
CD44-228ENST00000528455 TBCDQ9BTW9 1192 aa7.03□□□□□ -1.28
CD44-228ENST00000528455 TMEM120AQ9BXJ8 343 aa7.03□□□□□ -1.28
CD44-228ENST00000528455 MS4A8Q9BY19 250 aa7.03□□□□□ -1.28
CD44-228ENST00000528455 ACPTQ9BZG2 426 aa7.03□□□□□ -1.28
CD44-228ENST00000528455 ROGDIQ9GZN7 287 aa7.03□□□□□ -1.28
CD44-228ENST00000528455 REXO4Q9GZR2 422 aaKnown RBP7.03□□□□□ -1.28
CD44-228ENST00000528455 FAM107BQ9H098 131 aa7.03□□□□□ -1.28
CD44-228ENST00000528455 WDR55Q9H6Y2 383 aaPredicted RBP7.03□□□□□ -1.28
CD44-228ENST00000528455 LRTM1Q9HBL6 345 aa7.03□□□□□ -1.28
CD44-228ENST00000528455 DMRT3Q9NQL9 472 aa7.03□□□□□ -1.28
CD44-228ENST00000528455 PRDM7Q9NQW5 492 aa7.03□□□□□ -1.28
CD44-228ENST00000528455 FBXO8Q9NRD0 319 aa7.03□□□□□ -1.28
CD44-228ENST00000528455 C1orf109Q9NX04 203 aa7.03□□□□□ -1.28
CD44-228ENST00000528455 TMEM9Q9P0T7 183 aa7.03□□□□□ -1.28
CD44-228ENST00000528455 SLC12A4Q9UP95 1085 aa7.03□□□□□ -1.28
CD44-228ENST00000528455 EIF3LQ9Y262 564 aaKnown RBP7.03□□□□□ -1.28
CD44-228ENST00000528455 RUVBL1Q9Y265 456 aaKnown RBP7.03□□□□□ -1.28
CD44-228ENST00000528455 CFAP47Q6ZTR5 3102 aa7.03□□□□□ -1.28
CD44-228ENST00000528455 PTPRBP23467 1997 aa7.02□□□□□ -1.29
CD44-228ENST00000528455 ANKRD11Q6UB99 2663 aaPredicted RBP7.02□□□□□ -1.29
CD44-228ENST00000528455 CROCCQ5TZA2 2017 aa7.02□□□□□ -1.29
CD44-228ENST00000528455 SCN3AQ9NY46 2000 aa7.02□□□□□ -1.29
CD44-228ENST00000528455 GOLGA8QA0A0J9YX86 632 aa7.02□□□□□ -1.29
CD44-228ENST00000528455 GOLGA8OA6NCC3 632 aa7.02□□□□□ -1.29
CD44-228ENST00000528455 D6RAR5 112 aa7.02□□□□□ -1.29
CD44-228ENST00000528455 GOLGA8NF8WBI6 632 aa7.02□□□□□ -1.29
CD44-228ENST00000528455 H3BMH7 237 aa7.02□□□□□ -1.29
CD44-228ENST00000528455 UBDO15205 165 aa7.02□□□□□ -1.29
CD44-228ENST00000528455 PRAMEF10O60809 474 aa7.02□□□□□ -1.29
CD44-228ENST00000528455 PEX11AO75192 247 aa7.02□□□□□ -1.29
CD44-228ENST00000528455 SKAP2O75563 359 aaPredicted RBP7.02□□□□□ -1.29
CD44-228ENST00000528455 MYO1DO94832 1006 aa7.02□□□□□ -1.29
CD44-228ENST00000528455 MED26O95402 600 aa7.02□□□□□ -1.29
CD44-228ENST00000528455 PRPS2P11908 318 aa7.02□□□□□ -1.29
CD44-228ENST00000528455 FOLR1P15328 257 aa7.02□□□□□ -1.29
CD44-228ENST00000528455 DNAJA1P31689 397 aaKnown RBP7.02□□□□□ -1.29
CD44-228ENST00000528455 MRPL19P49406 292 aaKnown RBP7.02□□□□□ -1.29
CD44-228ENST00000528455 SEPHS1P49903 392 aa7.02□□□□□ -1.29
CD44-228ENST00000528455 HTR6P50406 440 aa7.02□□□□□ -1.29
CD44-228ENST00000528455 ARSFP54793 590 aa7.02□□□□□ -1.29
CD44-228ENST00000528455 TRA2BP62995 288 aaKnown RBP7.02□□□□□ -1.29
CD44-228ENST00000528455 ERVK-8P63133 956 aa7.02□□□□□ -1.29
CD44-228ENST00000528455 TUBB3Q13509 450 aa7.02□□□□□ -1.29
CD44-228ENST00000528455 NDUFA9Q16795 377 aa7.02□□□□□ -1.29
CD44-228ENST00000528455 PRTGQ2VWP7 1150 aa7.02□□□□□ -1.29
CD44-228ENST00000528455 NXNQ6DKJ4 435 aa7.02□□□□□ -1.29
CD44-228ENST00000528455 FRMPD2BQ6IN97 320 aa7.02□□□□□ -1.29
CD44-228ENST00000528455 NOXRED1Q6NXP6 359 aa7.02□□□□□ -1.29
CD44-228ENST00000528455 TLDC1Q6P9B6 456 aa7.02□□□□□ -1.29
CD44-228ENST00000528455 ABHD17CQ6PCB6 329 aa7.02□□□□□ -1.29
CD44-228ENST00000528455 DHRS13Q6UX07 377 aa7.02□□□□□ -1.29
CD44-228ENST00000528455 RBM44Q6ZP01 1051 aaKnown RBP7.02□□□□□ -1.29
CD44-228ENST00000528455 VN1R4Q7Z5H5 301 aa7.02□□□□□ -1.29
CD44-228ENST00000528455 ZFAND4Q86XD8 727 aa7.02□□□□□ -1.29
CD44-228ENST00000528455 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP7.02□□□□□ -1.29
CD44-228ENST00000528455 CACNA2D3Q8IZS8 1091 aa7.02□□□□□ -1.29
CD44-228ENST00000528455 METTL4Q8N3J2 472 aa7.02□□□□□ -1.29
CD44-228ENST00000528455 CPSF7Q8N684 471 aaKnown RBP7.02□□□□□ -1.29
CD44-228ENST00000528455 CCDC197Q8NCU1 140 aa7.02□□□□□ -1.29
CD44-228ENST00000528455 AGBL5Q8NDL9 886 aa7.02□□□□□ -1.29
CD44-228ENST00000528455 OR2T11Q8NH01 316 aa7.02□□□□□ -1.29
CD44-228ENST00000528455 N4BP2L2Q92802 583 aaPredicted RBP7.02□□□□□ -1.29
CD44-228ENST00000528455 MS4A6EQ96DS6 147 aa7.02□□□□□ -1.29
CD44-228ENST00000528455 THOC1Q96FV9 657 aaKnown RBP7.02□□□□□ -1.29
CD44-228ENST00000528455 KCNC2Q96PR1 638 aa7.02□□□□□ -1.29
CD44-228ENST00000528455 OR52B2Q96RD2 323 aa7.02□□□□□ -1.29
CD44-228ENST00000528455 F2RL3Q96RI0 385 aa7.02□□□□□ -1.29
CD44-228ENST00000528455 CMKLR1Q99788 373 aa7.02□□□□□ -1.29
CD44-228ENST00000528455 EBF4Q9BQW3 602 aa7.02□□□□□ -1.29
CD44-228ENST00000528455 STRADBQ9C0K7 418 aa7.02□□□□□ -1.29
CD44-228ENST00000528455 KLHL25Q9H0H3 589 aa7.02□□□□□ -1.29
CD44-228ENST00000528455 OR51B5Q9H339 312 aa7.02□□□□□ -1.29
CD44-228ENST00000528455 RABEP2Q9H5N1 569 aa7.02□□□□□ -1.29
CD44-228ENST00000528455 DDX31Q9H8H2 851 aaKnown RBP7.02□□□□□ -1.29
CD44-228ENST00000528455 FGF21Q9NSA1 209 aa7.02□□□□□ -1.29
CD44-228ENST00000528455 SOHLH2Q9NX45 425 aa7.02□□□□□ -1.29
CD44-228ENST00000528455 ASIC5Q9NY37 505 aa7.02□□□□□ -1.29
CD44-228ENST00000528455 AKAP7Q9P0M2 348 aaPredicted RBP7.02□□□□□ -1.29
CD44-228ENST00000528455 HEY2Q9UBP5 337 aa7.02□□□□□ -1.29
CD44-228ENST00000528455 ADAM29Q9UKF5 820 aa7.02□□□□□ -1.29
CD44-228ENST00000528455 MAPRE3Q9UPY8 281 aa7.02□□□□□ -1.29
CD44-228ENST00000528455 CHD6Q8TD26 2715 aa7.02□□□□□ -1.29
CD44-228ENST00000528455 A0A088AWK7 358 aa7.01□□□□□ -1.29
CD44-228ENST00000528455 HYKKA2RU49 373 aa7.01□□□□□ -1.29
CD44-228ENST00000528455 FAM149AA5PLN7 773 aa7.01□□□□□ -1.29
CD44-228ENST00000528455 TRABD2BA6NFA1 517 aa7.01□□□□□ -1.29
CD44-228ENST00000528455 B4E171 279 aa7.01□□□□□ -1.29
CD44-228ENST00000528455 SLC22A2O15244 555 aa7.01□□□□□ -1.29
CD44-228ENST00000528455 NDUFS4O43181 175 aa7.01□□□□□ -1.29
CD44-228ENST00000528455 HCRTR1O43613 425 aa7.01□□□□□ -1.29
CD44-228ENST00000528455 NRP2O60462 931 aa7.01□□□□□ -1.29
CD44-228ENST00000528455 GUCY1B2O75343 617 aa7.01□□□□□ -1.29
CD44-228ENST00000528455 DCTN3O75935 186 aa7.01□□□□□ -1.29
CD44-228ENST00000528455 OR2B3O76000 313 aa7.01□□□□□ -1.29
CD44-228ENST00000528455 ETHE1O95571 254 aa7.01□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms