RNA–Protein interactions for RNA: ENST00000525241.1

CD44-215, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 440 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-215ENST00000525241 POM121L1PQ3SYA9 428 aa3.44□□□□□ -1.86
CD44-215ENST00000525241 C9orf66Q5T8R8 295 aa3.44□□□□□ -1.86
CD44-215ENST00000525241 ZNF774Q6NX45 483 aa3.44□□□□□ -1.86
CD44-215ENST00000525241 SLC25A42Q86VD7 318 aa3.44□□□□□ -1.86
CD44-215ENST00000525241 P2RY8Q86VZ1 359 aa3.44□□□□□ -1.86
CD44-215ENST00000525241 TBC1D10CQ8IV04 446 aa3.44□□□□□ -1.86
CD44-215ENST00000525241 ZNF444Q8N0Y2 327 aaPredicted RBP3.44□□□□□ -1.86
CD44-215ENST00000525241 CSNK1G2-AS1Q8NCQ2 148 aa3.44□□□□□ -1.86
CD44-215ENST00000525241 AP2M1Q96CW1 435 aa3.44□□□□□ -1.86
CD44-215ENST00000525241 CACNG6Q9BXT2 260 aa3.44□□□□□ -1.86
CD44-215ENST00000525241 FUT8Q9BYC5 575 aa3.44□□□□□ -1.86
CD44-215ENST00000525241 LRRC2Q9BYS8 371 aa3.44□□□□□ -1.86
CD44-215ENST00000525241 ZDHHC6Q9H6R6 413 aa3.44□□□□□ -1.86
CD44-215ENST00000525241 UBE2TQ9NPD8 197 aaPredicted RBP3.44□□□□□ -1.86
CD44-215ENST00000525241 DEPPQ9NTK1 212 aa3.44□□□□□ -1.86
CD44-215ENST00000525241 MED17Q9NVC6 651 aa3.44□□□□□ -1.86
CD44-215ENST00000525241 PSORS1C1Q9UIG5 152 aa3.44□□□□□ -1.86
CD44-215ENST00000525241 NIP7Q9Y221 180 aaKnown RBP eCLIP3.44□□□□□ -1.86
CD44-215ENST00000525241 UMODL1Q5DID0 1318 aa3.44□□□□□ -1.86
CD44-215ENST00000525241 IGHV3-16A0A0C4DH30 117 aa3.43□□□□□ -1.86
CD44-215ENST00000525241 FAM149AA5PLN7 773 aa3.43□□□□□ -1.86
CD44-215ENST00000525241 OR5H15A6NDH6 313 aa3.43□□□□□ -1.86
CD44-215ENST00000525241 IGLON5A6NGN9 336 aa3.43□□□□□ -1.86
CD44-215ENST00000525241 RPL37AP8A6NKH3 93 aa3.43□□□□□ -1.86
CD44-215ENST00000525241 FBP2O00757 339 aa3.43□□□□□ -1.86
CD44-215ENST00000525241 OGTO15294 1046 aa3.43□□□□□ -1.86
CD44-215ENST00000525241 TXNL1O43396 289 aa3.43□□□□□ -1.86
CD44-215ENST00000525241 KHKP50053 298 aa3.43□□□□□ -1.86
CD44-215ENST00000525241 CCR4P51679 360 aa3.43□□□□□ -1.86
CD44-215ENST00000525241 RIDAP52758 137 aaKnown RBP3.43□□□□□ -1.86
CD44-215ENST00000525241 LIMK2P53671 638 aa3.43□□□□□ -1.86
CD44-215ENST00000525241 RPS27AP62979 156 aaKnown RBP3.43□□□□□ -1.86
CD44-215ENST00000525241 KRT83P78385 493 aa3.43□□□□□ -1.86
CD44-215ENST00000525241 MFGE8Q08431 387 aaPredicted RBP3.43□□□□□ -1.86
CD44-215ENST00000525241 RIGQ13278 110 aa3.43□□□□□ -1.86
CD44-215ENST00000525241 ITPK1Q13572 414 aa3.43□□□□□ -1.86
CD44-215ENST00000525241 SPHARQ15513 63 aa3.43□□□□□ -1.86
CD44-215ENST00000525241 ECSCRQ19T08 205 aa3.43□□□□□ -1.86
CD44-215ENST00000525241 LAX1Q8IWV1 398 aa3.43□□□□□ -1.86
CD44-215ENST00000525241 NUP93Q8N1F7 819 aa3.43□□□□□ -1.86
CD44-215ENST00000525241 OR1B1Q8NGR6 318 aa3.43□□□□□ -1.86
CD44-215ENST00000525241 SPATA18Q8TC71 538 aa3.43□□□□□ -1.86
CD44-215ENST00000525241 GGHQ92820 318 aa3.43□□□□□ -1.86
CD44-215ENST00000525241 TOMM40LQ969M1 308 aa3.43□□□□□ -1.86
CD44-215ENST00000525241 EPSTI1Q96J88 318 aa3.43□□□□□ -1.86
CD44-215ENST00000525241 RCHY1Q96PM5 261 aa3.43□□□□□ -1.86
CD44-215ENST00000525241 RPP25Q9BUL9 199 aaKnown RBP3.43□□□□□ -1.86
CD44-215ENST00000525241 RNPEPL1Q9HAU8 725 aa3.43□□□□□ -1.86
CD44-215ENST00000525241 NMUR1Q9HB89 426 aa3.43□□□□□ -1.86
CD44-215ENST00000525241 PNPLA3Q9NST1 481 aa3.43□□□□□ -1.86
CD44-215ENST00000525241 TSPAN16Q9UKR8 245 aa3.43□□□□□ -1.86
CD44-215ENST00000525241 ITM2BQ9Y287 266 aa3.43□□□□□ -1.86
CD44-215ENST00000525241 AUP1Q9Y679 476 aa3.43□□□□□ -1.86
CD44-215ENST00000525241 LOC390937A0A1W2PQ73 354 aa3.42□□□□□ -1.86
CD44-215ENST00000525241 CHUKO15111 745 aa3.42□□□□□ -1.86
CD44-215ENST00000525241 SEMA4FO95754 770 aa3.42□□□□□ -1.86
CD44-215ENST00000525241 LYNP07948 512 aa3.42□□□□□ -1.86
CD44-215ENST00000525241 VCLP18206 1134 aa3.42□□□□□ -1.86
CD44-215ENST00000525241 ATP5DP30049 168 aa3.42□□□□□ -1.86
CD44-215ENST00000525241 PEX3P56589 373 aa3.42□□□□□ -1.86
CD44-215ENST00000525241 ACY1Q03154 408 aa3.42□□□□□ -1.86
CD44-215ENST00000525241 KRT71Q3SY84 523 aa3.42□□□□□ -1.86
CD44-215ENST00000525241 GLRA4Q5JXX5 417 aa3.42□□□□□ -1.86
CD44-215ENST00000525241 MUC21Q5SSG8 566 aa3.42□□□□□ -1.86
CD44-215ENST00000525241 KCTD11Q693B1 232 aa3.42□□□□□ -1.86
CD44-215ENST00000525241 SNRNP48Q6IEG0 339 aaKnown RBP3.42□□□□□ -1.86
CD44-215ENST00000525241 CAPN13Q6MZZ7 669 aaPredicted RBP3.42□□□□□ -1.86
CD44-215ENST00000525241 ALKBH5Q6P6C2 394 aaKnown RBP3.42□□□□□ -1.86
CD44-215ENST00000525241 KCTD9Q7L273 389 aa3.42□□□□□ -1.86
CD44-215ENST00000525241 THEM5Q8N1Q8 247 aa3.42□□□□□ -1.86
CD44-215ENST00000525241 FGFRL1Q8N441 504 aa3.42□□□□□ -1.86
CD44-215ENST00000525241 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP3.42□□□□□ -1.86
CD44-215ENST00000525241 BANPQ8N9N5 519 aa3.42□□□□□ -1.86
CD44-215ENST00000525241 PCNPQ8WW12 178 aaKnown RBP3.42□□□□□ -1.86
CD44-215ENST00000525241 C1orf147Q96MC9 270 aaPredicted RBP3.42□□□□□ -1.86
CD44-215ENST00000525241 PSMB7Q99436 277 aa3.42□□□□□ -1.86
CD44-215ENST00000525241 SSX3Q99909 188 aa3.42□□□□□ -1.86
CD44-215ENST00000525241 LRRCC1Q9C099 1032 aa3.42□□□□□ -1.86
CD44-215ENST00000525241 C2orf40Q9H1Z8 148 aa3.42□□□□□ -1.86
CD44-215ENST00000525241 FAM212BQ9NTI7 297 aaPredicted RBP3.42□□□□□ -1.86
CD44-215ENST00000525241 PLEK2Q9NYT0 353 aa3.42□□□□□ -1.86
CD44-215ENST00000525241 SPATA2Q9UM82 520 aa3.42□□□□□ -1.86
CD44-215ENST00000525241 KIAA1217Q5T5P2 1943 aa3.41□□□□□ -1.86
CD44-215ENST00000525241 ZNF724A8MTY0 619 aa3.41□□□□□ -1.86
CD44-215ENST00000525241 CCSO14618 274 aa3.41□□□□□ -1.86
CD44-215ENST00000525241 ZNF263O14978 683 aa3.41□□□□□ -1.86
CD44-215ENST00000525241 BCL2L11O43521 198 aa3.41□□□□□ -1.86
CD44-215ENST00000525241 FRAT2O75474 233 aaPredicted RBP3.41□□□□□ -1.86
CD44-215ENST00000525241 RENP00797 406 aa3.41□□□□□ -1.86
CD44-215ENST00000525241 EPOP01588 193 aa3.41□□□□□ -1.86
CD44-215ENST00000525241 FHP07954 510 aa3.41□□□□□ -1.86
CD44-215ENST00000525241 HCKP08631 526 aa3.41□□□□□ -1.86
CD44-215ENST00000525241 ANPEPP15144 967 aa3.41□□□□□ -1.86
CD44-215ENST00000525241 GLRA1P23415 457 aa3.41□□□□□ -1.86
CD44-215ENST00000525241 SLC1A4P43007 532 aa3.41□□□□□ -1.86
CD44-215ENST00000525241 ADARP55265 1226 aaKnown RBP3.41□□□□□ -1.86
CD44-215ENST00000525241 STX1BP61266 288 aa3.41□□□□□ -1.86
CD44-215ENST00000525241 POU5F1Q01860 360 aaKnown RBP3.41□□□□□ -1.86
CD44-215ENST00000525241 GABPAQ06546 454 aa3.41□□□□□ -1.86
CD44-215ENST00000525241 FASTKQ14296 549 aaKnown RBP3.41□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms