RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 RAB33AQ14088 237 aa8.83□□□□□ -1
LIMCH1-215ENST00000512632 SPHARQ15513 63 aa8.83□□□□□ -1
LIMCH1-215ENST00000512632 CEACAM20Q6UY09 585 aa8.83□□□□□ -1
LIMCH1-215ENST00000512632 TMPRSS11AQ6ZMR5 421 aa8.83□□□□□ -1
LIMCH1-215ENST00000512632 DEF8Q6ZN54 512 aa8.83□□□□□ -1
LIMCH1-215ENST00000512632 C11orf74Q86VG3 221 aa8.83□□□□□ -1
LIMCH1-215ENST00000512632 MMAAQ8IVH4 418 aaKnown RBP8.83□□□□□ -1
LIMCH1-215ENST00000512632 IQCF1Q8N6M8 205 aa8.83□□□□□ -1
LIMCH1-215ENST00000512632 OR56A3Q8NH54 315 aa8.83□□□□□ -1
LIMCH1-215ENST00000512632 PIK3R3Q92569 461 aa8.83□□□□□ -1
LIMCH1-215ENST00000512632 SLC46A2Q9BY10 475 aa8.83□□□□□ -1
LIMCH1-215ENST00000512632 NDEL1Q9GZM8 345 aa8.83□□□□□ -1
LIMCH1-215ENST00000512632 MMP28Q9H239 520 aa8.83□□□□□ -1
LIMCH1-215ENST00000512632 LINC00597Q9H2U6 94 aa8.83□□□□□ -1
LIMCH1-215ENST00000512632 SMURF1Q9HCE7 757 aa8.83□□□□□ -1
LIMCH1-215ENST00000512632 DYRK4Q9NR20 520 aa8.83□□□□□ -1
LIMCH1-215ENST00000512632 FTSJ1Q9UET6 329 aa8.83□□□□□ -1
LIMCH1-215ENST00000512632 TMCC3Q9ULS5 477 aa8.83□□□□□ -1
LIMCH1-215ENST00000512632 C5orf58C9J3I9 102 aa8.83□□□□□ -1
LIMCH1-215ENST00000512632 LRRTM2O43300 516 aa8.83□□□□□ -1
LIMCH1-215ENST00000512632 ATG13O75143 517 aa8.83□□□□□ -1
LIMCH1-215ENST00000512632 SLITRK5O94991 958 aa8.83□□□□□ -1
LIMCH1-215ENST00000512632 ZNF24P17028 368 aa8.83□□□□□ -1
LIMCH1-215ENST00000512632 C21orf58P58505 322 aa8.83□□□□□ -1
LIMCH1-215ENST00000512632 RACK1P63244 317 aaKnown RBP8.83□□□□□ -1
LIMCH1-215ENST00000512632 SP3Q02447 781 aa8.83□□□□□ -1
LIMCH1-215ENST00000512632 RBBP4Q09028 425 aa8.83□□□□□ -1
LIMCH1-215ENST00000512632 SEC23BQ15437 767 aa8.83□□□□□ -1
LIMCH1-215ENST00000512632 LIPKQ5VXJ0 399 aa8.83□□□□□ -1
LIMCH1-215ENST00000512632 CAMKMTQ7Z624 323 aa8.83□□□□□ -1
LIMCH1-215ENST00000512632 METTL3Q86U44 580 aaKnown RBP8.83□□□□□ -1
LIMCH1-215ENST00000512632 SLC43A3Q8NBI5 491 aa8.83□□□□□ -1
LIMCH1-215ENST00000512632 ST13P5Q8NFI4 369 aaPredicted RBP8.83□□□□□ -1
LIMCH1-215ENST00000512632 C9orf43Q8TAL5 461 aaPredicted RBP8.83□□□□□ -1
LIMCH1-215ENST00000512632 PUM2Q8TB72 1066 aaKnown RBP eCLIP8.83□□□□□ -1
LIMCH1-215ENST00000512632 BTN2A2Q8WVV5 523 aa8.83□□□□□ -1
LIMCH1-215ENST00000512632 AP2M1Q96CW1 435 aa8.83□□□□□ -1
LIMCH1-215ENST00000512632 OR2A14Q96R47 310 aa8.83□□□□□ -1
LIMCH1-215ENST00000512632 MAPKAP1Q9BPZ7 522 aa8.83□□□□□ -1
LIMCH1-215ENST00000512632 BEX2Q9BXY8 128 aa8.83□□□□□ -1
LIMCH1-215ENST00000512632 THSD1Q9NS62 852 aa8.83□□□□□ -1
LIMCH1-215ENST00000512632 NOX1Q9Y5S8 564 aa8.83□□□□□ -1
LIMCH1-215ENST00000512632 RECKO95980 971 aa8.83□□□□□ -1
LIMCH1-215ENST00000512632 IFNA14P01570 189 aa8.83□□□□□ -1
LIMCH1-215ENST00000512632 PTX3P26022 381 aaPredicted RBP8.83□□□□□ -1
LIMCH1-215ENST00000512632 GJA8P48165 433 aa8.83□□□□□ -1
LIMCH1-215ENST00000512632 EEF1A2Q05639 463 aaKnown RBP8.83□□□□□ -1
LIMCH1-215ENST00000512632 KRR1Q13601 381 aaKnown RBP8.83□□□□□ -1
LIMCH1-215ENST00000512632 TRMT11Q7Z4G4 463 aaKnown RBP8.83□□□□□ -1
LIMCH1-215ENST00000512632 NANOGNBQ7Z5D8 188 aa8.83□□□□□ -1
LIMCH1-215ENST00000512632 MEX3DQ86XN8 651 aaKnown RBP8.83□□□□□ -1
LIMCH1-215ENST00000512632 OXR1Q8N573 874 aa8.83□□□□□ -1
LIMCH1-215ENST00000512632 FAM46DQ8NEK8 389 aa8.83□□□□□ -1
LIMCH1-215ENST00000512632 OTUB1Q96FW1 271 aaPredicted RBP8.83□□□□□ -1
LIMCH1-215ENST00000512632 WFDC6Q9BQY6 131 aa8.83□□□□□ -1
LIMCH1-215ENST00000512632 RSPO3Q9BXY4 272 aaPredicted RBP8.83□□□□□ -1
LIMCH1-215ENST00000512632 ABCG4Q9H172 646 aa8.83□□□□□ -1
LIMCH1-215ENST00000512632 CXorf36Q9H7Y0 433 aa8.83□□□□□ -1
LIMCH1-215ENST00000512632 GPBP1L1Q9HC44 474 aaPredicted RBP8.83□□□□□ -1
LIMCH1-215ENST00000512632 TVP23BQ9NYZ1 205 aa8.83□□□□□ -1
LIMCH1-215ENST00000512632 CRNNQ9UBG3 495 aaPredicted RBP8.83□□□□□ -1
LIMCH1-215ENST00000512632 ANGPT4Q9Y264 503 aa8.83□□□□□ -1
LIMCH1-215ENST00000512632 DYRK1BQ9Y463 629 aa8.83□□□□□ -1
LIMCH1-215ENST00000512632 PIPSLA2A3N6 862 aa8.82□□□□□ -1
LIMCH1-215ENST00000512632 RFXAPO00287 272 aa8.82□□□□□ -1
LIMCH1-215ENST00000512632 GRM6O15303 877 aa8.82□□□□□ -1
LIMCH1-215ENST00000512632 KRT75O95678 551 aa8.82□□□□□ -1
LIMCH1-215ENST00000512632 CSF2P04141 144 aa8.82□□□□□ -1
LIMCH1-215ENST00000512632 CLEC2LP0C7M8 214 aa8.82□□□□□ -1
LIMCH1-215ENST00000512632 ARAFP10398 606 aa8.82□□□□□ -1
LIMCH1-215ENST00000512632 PSMA1P25786 263 aaKnown RBP8.82□□□□□ -1
LIMCH1-215ENST00000512632 TIE1P35590 1138 aa8.82□□□□□ -1
LIMCH1-215ENST00000512632 DSTNP60981 165 aa8.82□□□□□ -1
LIMCH1-215ENST00000512632 LSM11P83369 360 aaKnown RBP eCLIP8.82□□□□□ -1
LIMCH1-215ENST00000512632 ZNF33BQ06732 778 aa8.82□□□□□ -1
LIMCH1-215ENST00000512632 ZNF630Q2M218 657 aaPredicted RBP8.82□□□□□ -1
LIMCH1-215ENST00000512632 ATAD3CQ5T2N8 411 aa8.82□□□□□ -1
LIMCH1-215ENST00000512632 TRAPPC5Q8IUR0 188 aa8.82□□□□□ -1
LIMCH1-215ENST00000512632 OR9Q1Q8NGQ5 310 aa8.82□□□□□ -1
LIMCH1-215ENST00000512632 OR6F1Q8NGZ6 308 aa8.82□□□□□ -1
LIMCH1-215ENST00000512632 GLYATL1Q969I3 302 aa8.82□□□□□ -1
LIMCH1-215ENST00000512632 CPEB1Q9BZB8 566 aaKnown RBP8.82□□□□□ -1
LIMCH1-215ENST00000512632 SPG21Q9NZD8 308 aa8.82□□□□□ -1
LIMCH1-215ENST00000512632 PLAGL1Q9UM63 463 aa8.82□□□□□ -1
LIMCH1-215ENST00000512632 PLD2O14939 933 aa8.82□□□□□ -1
LIMCH1-215ENST00000512632 C1GALT1C1LP0DN25 315 aa8.82□□□□□ -1
LIMCH1-215ENST00000512632 RHCEP18577 417 aa8.82□□□□□ -1
LIMCH1-215ENST00000512632 CD72P21854 359 aa8.82□□□□□ -1
LIMCH1-215ENST00000512632 VIPR1P32241 457 aa8.82□□□□□ -1
LIMCH1-215ENST00000512632 GRIN2CQ14957 1233 aa8.82□□□□□ -1
LIMCH1-215ENST00000512632 MPP7Q5T2T1 576 aa8.82□□□□□ -1
LIMCH1-215ENST00000512632 ZDHHC20Q5W0Z9 365 aa8.82□□□□□ -1
LIMCH1-215ENST00000512632 LSRQ86X29 649 aaPredicted RBP8.82□□□□□ -1
LIMCH1-215ENST00000512632 TCEAL8Q8IYN2 117 aa8.82□□□□□ -1
LIMCH1-215ENST00000512632 NLNQ9BYT8 704 aa8.82□□□□□ -1
LIMCH1-215ENST00000512632 DMRT3Q9NQL9 472 aa8.82□□□□□ -1
LIMCH1-215ENST00000512632 GULP1Q9UBP9 304 aa8.82□□□□□ -1
LIMCH1-215ENST00000512632 SNX11Q9Y5W9 270 aa8.82□□□□□ -1
LIMCH1-215ENST00000512632 FRMPD3Q5JV73 1810 aa8.82□□□□□ -1
LIMCH1-215ENST00000512632 SLC5A10A0PJK1 596 aa8.82□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 59.2 ms