RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 CLCNKAP51800 687 aa11.41□□□□□ -0.58
NUP54-202ENST00000502850 HMGA2P52926 109 aa11.41□□□□□ -0.58
NUP54-202ENST00000502850 GP2P55259 537 aaKnown RBP11.41□□□□□ -0.58
NUP54-202ENST00000502850 CDH12P55289 794 aa11.41□□□□□ -0.58
NUP54-202ENST00000502850 C21orf59P57076 290 aa11.41□□□□□ -0.58
NUP54-202ENST00000502850 ABATP80404 500 aa11.41□□□□□ -0.58
NUP54-202ENST00000502850 SGCGQ13326 291 aa11.41□□□□□ -0.58
NUP54-202ENST00000502850 IRF4Q15306 451 aa11.41□□□□□ -0.58
NUP54-202ENST00000502850 SPDYE7PQ495Y7 208 aa11.41□□□□□ -0.58
NUP54-202ENST00000502850 TANGO2Q6ICL3 276 aa11.41□□□□□ -0.58
NUP54-202ENST00000502850 CEACAM20Q6UY09 585 aa11.41□□□□□ -0.58
NUP54-202ENST00000502850 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP11.41□□□□□ -0.58
NUP54-202ENST00000502850 FAM124AQ86V42 546 aa11.41□□□□□ -0.58
NUP54-202ENST00000502850 P2RY8Q86VZ1 359 aa11.41□□□□□ -0.58
NUP54-202ENST00000502850 HDDC3Q8N4P3 179 aa11.41□□□□□ -0.58
NUP54-202ENST00000502850 OR2L8Q8NGY9 312 aa11.41□□□□□ -0.58
NUP54-202ENST00000502850 PHF10Q8WUB8 498 aaKnown RBP11.41□□□□□ -0.58
NUP54-202ENST00000502850 TRUB1Q8WWH5 349 aaKnown RBP11.41□□□□□ -0.58
NUP54-202ENST00000502850 TM4SF18Q96CE8 201 aa11.41□□□□□ -0.58
NUP54-202ENST00000502850 FERD3LQ96RJ6 166 aa11.41□□□□□ -0.58
NUP54-202ENST00000502850 ZNF607Q96SK3 696 aa11.41□□□□□ -0.58
NUP54-202ENST00000502850 MAPKAP1Q9BPZ7 522 aa11.41□□□□□ -0.58
NUP54-202ENST00000502850 MENTQ9BUN1 341 aa11.41□□□□□ -0.58
NUP54-202ENST00000502850 ACAT2Q9BWD1 397 aa11.41□□□□□ -0.58
NUP54-202ENST00000502850 CXorf36Q9H7Y0 433 aa11.41□□□□□ -0.58
NUP54-202ENST00000502850 UBE2ZQ9H832 354 aaPredicted RBP11.41□□□□□ -0.58
NUP54-202ENST00000502850 TBCCD1Q9NVR7 557 aa11.41□□□□□ -0.58
NUP54-202ENST00000502850 ERVK-18Q9QC07 812 aa11.41□□□□□ -0.58
NUP54-202ENST00000502850 SLC23A2Q9UGH3 650 aa11.41□□□□□ -0.58
NUP54-202ENST00000502850 B3GNT3Q9Y2A9 372 aa11.41□□□□□ -0.58
NUP54-202ENST00000502850 HCN4Q9Y3Q4 1203 aa11.41□□□□□ -0.58
NUP54-202ENST00000502850 PRKAB1Q9Y478 270 aa11.41□□□□□ -0.58
NUP54-202ENST00000502850 SNX8Q9Y5X2 465 aa11.41□□□□□ -0.58
NUP54-202ENST00000502850 HEBP2Q9Y5Z4 205 aa11.41□□□□□ -0.58
NUP54-202ENST00000502850 TRPM6Q9BX84 2022 aa11.41□□□□□ -0.58
NUP54-202ENST00000502850 A0A0J9YVX5 310 aa11.4□□□□□ -0.58
NUP54-202ENST00000502850 TRBC2A0A5B9 178 aa11.4□□□□□ -0.58
NUP54-202ENST00000502850 BCAS1O75363 584 aaPredicted RBP11.4□□□□□ -0.58
NUP54-202ENST00000502850 INMTO95050 263 aa11.4□□□□□ -0.58
NUP54-202ENST00000502850 GADD45GO95257 159 aa11.4□□□□□ -0.58
NUP54-202ENST00000502850 OXSR1O95747 527 aaPredicted RBP11.4□□□□□ -0.58
NUP54-202ENST00000502850 OPN1SWP03999 348 aa11.4□□□□□ -0.58
NUP54-202ENST00000502850 ZNF12P17014 697 aa11.4□□□□□ -0.58
NUP54-202ENST00000502850 ZNF182P17025 639 aaPredicted RBP11.4□□□□□ -0.58
NUP54-202ENST00000502850 PPP2R1BP30154 601 aa11.4□□□□□ -0.58
NUP54-202ENST00000502850 KRT20P35900 424 aa11.4□□□□□ -0.58
NUP54-202ENST00000502850 TNFRSF4P43489 277 aa11.4□□□□□ -0.58
NUP54-202ENST00000502850 SMIM11AP58511 58 aa11.4□□□□□ -0.58
NUP54-202ENST00000502850 TAS2R38P59533 333 aa11.4□□□□□ -0.58
NUP54-202ENST00000502850 PRDX1Q06830 199 aaKnown RBP11.4□□□□□ -0.58
NUP54-202ENST00000502850 BNIP3Q12983 259 aa11.4□□□□□ -0.58
NUP54-202ENST00000502850 GNA13Q14344 377 aa11.4□□□□□ -0.58
NUP54-202ENST00000502850 CLCA4Q14CN2 919 aa11.4□□□□□ -0.58
NUP54-202ENST00000502850 ITPRIPL2Q3MIP1 535 aa11.4□□□□□ -0.58
NUP54-202ENST00000502850 BHLHB9Q6PI77 547 aa11.4□□□□□ -0.58
NUP54-202ENST00000502850 SLC16A12Q6ZSM3 486 aa11.4□□□□□ -0.58
NUP54-202ENST00000502850 ENTHD1Q8IYW4 607 aa11.4□□□□□ -0.58
NUP54-202ENST00000502850 TAGAPQ8N103 731 aa11.4□□□□□ -0.58
NUP54-202ENST00000502850 ANKRD53Q8N9V6 530 aa11.4□□□□□ -0.58
NUP54-202ENST00000502850 TP53I13Q8NBR0 393 aaPredicted RBP11.4□□□□□ -0.58
NUP54-202ENST00000502850 OR5AK3PQ8NH89 298 aa11.4□□□□□ -0.58
NUP54-202ENST00000502850 PSMA8Q8TAA3 256 aa11.4□□□□□ -0.58
NUP54-202ENST00000502850 S100ZQ8WXG8 99 aa11.4□□□□□ -0.58
NUP54-202ENST00000502850 SGCDQ92629 289 aa11.4□□□□□ -0.58
NUP54-202ENST00000502850 PROX1Q92786 737 aa11.4□□□□□ -0.58
NUP54-202ENST00000502850 EZH1Q92800 747 aaPredicted RBP11.4□□□□□ -0.58
NUP54-202ENST00000502850 ELSPBP1Q96BH3 223 aa11.4□□□□□ -0.58
NUP54-202ENST00000502850 C12orf66Q96MD2 445 aa11.4□□□□□ -0.58
NUP54-202ENST00000502850 FEVQ99581 238 aa11.4□□□□□ -0.58
NUP54-202ENST00000502850 ZNF717Q9BY31 904 aaPredicted RBP11.4□□□□□ -0.58
NUP54-202ENST00000502850 WDR12Q9GZL7 423 aaKnown RBP11.4□□□□□ -0.58
NUP54-202ENST00000502850 OCEL1Q9H607 264 aa11.4□□□□□ -0.58
NUP54-202ENST00000502850 DDX31Q9H8H2 851 aaKnown RBP11.4□□□□□ -0.58
NUP54-202ENST00000502850 ANKHQ9HCJ1 492 aa11.4□□□□□ -0.58
NUP54-202ENST00000502850 ACOT13Q9NPJ3 140 aa11.4□□□□□ -0.58
NUP54-202ENST00000502850 CUEDC1Q9NWM3 386 aaPredicted RBP11.4□□□□□ -0.58
NUP54-202ENST00000502850 IMPAD1Q9NX62 359 aa11.4□□□□□ -0.58
NUP54-202ENST00000502850 TAS2R7Q9NYW3 318 aa11.4□□□□□ -0.58
NUP54-202ENST00000502850 PCDHGA6Q9Y5G7 932 aa11.4□□□□□ -0.58
NUP54-202ENST00000502850 PCDHGA2Q9Y5H1 932 aa11.4□□□□□ -0.58
NUP54-202ENST00000502850 A0A1W2PPV9 198 aa11.39□□□□□ -0.59
NUP54-202ENST00000502850 CLDN24A6NM45 220 aa11.39□□□□□ -0.59
NUP54-202ENST00000502850 OR1F1O43749 312 aa11.39□□□□□ -0.59
NUP54-202ENST00000502850 SERPINB7O75635 380 aa11.39□□□□□ -0.59
NUP54-202ENST00000502850 MT-ND2P03891 347 aa11.39□□□□□ -0.59
NUP54-202ENST00000502850 INHBBP09529 407 aa11.39□□□□□ -0.59
NUP54-202ENST00000502850 PKLRP30613 574 aa11.39□□□□□ -0.59
NUP54-202ENST00000502850 NTSP30990 170 aa11.39□□□□□ -0.59
NUP54-202ENST00000502850 TSFMP43897 325 aaKnown RBP11.39□□□□□ -0.59
NUP54-202ENST00000502850 ALDH9A1P49189 494 aa11.39□□□□□ -0.59
NUP54-202ENST00000502850 GALK1P51570 392 aa11.39□□□□□ -0.59
NUP54-202ENST00000502850 PCBP4P57723 403 aaKnown RBP11.39□□□□□ -0.59
NUP54-202ENST00000502850 CDC42P60953 191 aa11.39□□□□□ -0.59
NUP54-202ENST00000502850 CYP4F2P78329 520 aa11.39□□□□□ -0.59
NUP54-202ENST00000502850 KRT33BQ14525 404 aa11.39□□□□□ -0.59
NUP54-202ENST00000502850 ZNF846Q147U1 533 aa11.39□□□□□ -0.59
NUP54-202ENST00000502850 NUMA1Q14980 2115 aa11.39□□□□□ -0.59
NUP54-202ENST00000502850 TBCEQ15813 527 aaPredicted RBP11.39□□□□□ -0.59
NUP54-202ENST00000502850 DGUOKQ16854 277 aa11.39□□□□□ -0.59
NUP54-202ENST00000502850 EXOC3L2Q2M3D2 409 aa11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms