RNA–Protein interactions for RNA: ENST00000496347.1

HDAC4-213, Transcript of histone deacetylase 4, humanhuman

TSL 3

Gene HDAC4, Length 995 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-213ENST00000496347 CYSRT1A8MQ03 144 aa14.67□□□□□ -0.06
HDAC4-213ENST00000496347 STX16-NPEPL1H3BU86 382 aa14.67□□□□□ -0.06
HDAC4-213ENST00000496347 STX16O14662 325 aa14.67□□□□□ -0.06
HDAC4-213ENST00000496347 NME2P1O60361 137 aa14.67□□□□□ -0.06
HDAC4-213ENST00000496347 CTNSO60931 367 aa14.67□□□□□ -0.06
HDAC4-213ENST00000496347 RBP1P09455 135 aa14.67□□□□□ -0.06
HDAC4-213ENST00000496347 COL6A2P12110 1019 aa14.67□□□□□ -0.06
HDAC4-213ENST00000496347 NME2P22392 152 aa14.67□□□□□ -0.06
HDAC4-213ENST00000496347 MST1P26927 711 aa14.67□□□□□ -0.06
HDAC4-213ENST00000496347 HLCSP50747 726 aa14.67□□□□□ -0.06
HDAC4-213ENST00000496347 RAP1GDS1P52306 607 aa14.67□□□□□ -0.06
HDAC4-213ENST00000496347 KCNK10P57789 538 aa14.67□□□□□ -0.06
HDAC4-213ENST00000496347 PMP22Q01453 160 aa14.67□□□□□ -0.06
HDAC4-213ENST00000496347 RBPJQ06330 500 aa14.67□□□□□ -0.06
HDAC4-213ENST00000496347 GTF2H2Q13888 395 aa14.67□□□□□ -0.06
HDAC4-213ENST00000496347 SERTAD2Q14140 314 aa14.67□□□□□ -0.06
HDAC4-213ENST00000496347 AP5B1Q2VPB7 878 aa14.67□□□□□ -0.06
HDAC4-213ENST00000496347 C10orf62Q5T681 223 aaPredicted RBP14.67□□□□□ -0.06
HDAC4-213ENST00000496347 SPINK14Q6IE38 97 aa14.67□□□□□ -0.06
HDAC4-213ENST00000496347 GTF2H2CQ6P1K8 395 aa14.67□□□□□ -0.06
HDAC4-213ENST00000496347 GOLGA7Q7Z5G4 137 aa14.67□□□□□ -0.06
HDAC4-213ENST00000496347 CLNKQ7Z7G1 428 aa14.67□□□□□ -0.06
HDAC4-213ENST00000496347 CNPY4Q8N129 248 aa14.67□□□□□ -0.06
HDAC4-213ENST00000496347 TMEM132CQ8N3T6 1108 aa14.67□□□□□ -0.06
HDAC4-213ENST00000496347 CEP112Q8N8E3 955 aa14.67□□□□□ -0.06
HDAC4-213ENST00000496347 DAZLQ92904 295 aaKnown RBP14.67□□□□□ -0.06
HDAC4-213ENST00000496347 TMEM125Q96AQ2 219 aa14.67□□□□□ -0.06
HDAC4-213ENST00000496347 CCDC77Q9BR77 488 aa14.67□□□□□ -0.06
HDAC4-213ENST00000496347 KLHL1Q9NR64 748 aa14.67□□□□□ -0.06
HDAC4-213ENST00000496347 MS4A12Q9NXJ0 267 aa14.67□□□□□ -0.06
HDAC4-213ENST00000496347 CPSF2Q9P2I0 782 aaKnown RBP14.67□□□□□ -0.06
HDAC4-213ENST00000496347 XPR1Q9UBH6 696 aa14.67□□□□□ -0.06
HDAC4-213ENST00000496347 SEC14L3Q9UDX4 400 aa14.67□□□□□ -0.06
HDAC4-213ENST00000496347 PHF11Q9UIL8 331 aa14.67□□□□□ -0.06
HDAC4-213ENST00000496347 A8MUA0 341 aa14.66□□□□□ -0.06
HDAC4-213ENST00000496347 LRRTM2O43300 516 aa14.66□□□□□ -0.06
HDAC4-213ENST00000496347 UNC5CO95185 931 aa14.66□□□□□ -0.06
HDAC4-213ENST00000496347 SP1P08047 785 aa14.66□□□□□ -0.06
HDAC4-213ENST00000496347 PPP2R1BP30154 601 aa14.66□□□□□ -0.06
HDAC4-213ENST00000496347 STX4Q12846 297 aa14.66□□□□□ -0.06
HDAC4-213ENST00000496347 DDX39BQ13838 428 aaKnown RBP14.66□□□□□ -0.06
HDAC4-213ENST00000496347 DEPDC1Q5TB30 811 aa14.66□□□□□ -0.06
HDAC4-213ENST00000496347 ZCCHC7Q8N3Z6 543 aaKnown RBP14.66□□□□□ -0.06
HDAC4-213ENST00000496347 PTGR2Q8N8N7 351 aaPredicted RBP14.66□□□□□ -0.06
HDAC4-213ENST00000496347 L3MBTL4Q8NA19 623 aa14.66□□□□□ -0.06
HDAC4-213ENST00000496347 THAP3Q8WTV1 239 aaPredicted RBP14.66□□□□□ -0.06
HDAC4-213ENST00000496347 DCAKDQ8WVC6 231 aa14.66□□□□□ -0.06
HDAC4-213ENST00000496347 NCLNQ969V3 563 aa14.66□□□□□ -0.06
HDAC4-213ENST00000496347 RGMAQ96B86 450 aa14.66□□□□□ -0.06
HDAC4-213ENST00000496347 HES7Q9BYE0 225 aa14.66□□□□□ -0.06
HDAC4-213ENST00000496347 VTI1BQ9UEU0 232 aa14.66□□□□□ -0.06
HDAC4-213ENST00000496347 ZNF223Q9UK11 482 aaPredicted RBP14.66□□□□□ -0.06
HDAC4-213ENST00000496347 PPT2Q9UMR5 302 aa14.66□□□□□ -0.06
HDAC4-213ENST00000496347 CLCA3PQ9Y6N3 262 aa14.66□□□□□ -0.06
HDAC4-213ENST00000496347 EXOC1LA0A1B0GW35 172 aa14.65□□□□□ -0.06
HDAC4-213ENST00000496347 A1L4Q6 167 aa14.65□□□□□ -0.06
HDAC4-213ENST00000496347 RTCAO00442 366 aaKnown RBP14.65□□□□□ -0.06
HDAC4-213ENST00000496347 ITGA10O75578 1167 aa14.65□□□□□ -0.06
HDAC4-213ENST00000496347 TGFB1P01137 390 aa14.65□□□□□ -0.06
HDAC4-213ENST00000496347 IFNA16P05015 189 aa14.65□□□□□ -0.06
HDAC4-213ENST00000496347 ZNF24P17028 368 aa14.65□□□□□ -0.06
HDAC4-213ENST00000496347 GPR143P51810 404 aa14.65□□□□□ -0.06
HDAC4-213ENST00000496347 TNFRSF17Q02223 184 aa14.65□□□□□ -0.06
HDAC4-213ENST00000496347 CUL3Q13618 768 aa14.65□□□□□ -0.06
HDAC4-213ENST00000496347 ZNF468Q5VIY5 522 aaPredicted RBP14.65□□□□□ -0.06
HDAC4-213ENST00000496347 SLC25A25Q6KCM7 469 aa14.65□□□□□ -0.06
HDAC4-213ENST00000496347 TRMT10CQ7L0Y3 403 aaKnown RBP14.65□□□□□ -0.06
HDAC4-213ENST00000496347 GALNTL5Q7Z4T8 443 aa14.65□□□□□ -0.06
HDAC4-213ENST00000496347 GPALPP1Q8IXQ4 340 aa14.65□□□□□ -0.06
HDAC4-213ENST00000496347 IFT20Q8IY31 132 aa14.65□□□□□ -0.06
HDAC4-213ENST00000496347 PLD6Q8N2A8 252 aaKnown RBP14.65□□□□□ -0.06
HDAC4-213ENST00000496347 POGLUT1Q8NBL1 392 aa14.65□□□□□ -0.06
HDAC4-213ENST00000496347 MORN4Q8NDC4 146 aa14.65□□□□□ -0.06
HDAC4-213ENST00000496347 RELTQ969Z4 430 aa14.65□□□□□ -0.06
HDAC4-213ENST00000496347 GPR137Q96N19 417 aa14.65□□□□□ -0.06
HDAC4-213ENST00000496347 MTERF1Q99551 399 aaKnown RBP14.65□□□□□ -0.06
HDAC4-213ENST00000496347 MAPKAP1Q9BPZ7 522 aa14.65□□□□□ -0.06
HDAC4-213ENST00000496347 MRPL57Q9BQC6 102 aaKnown RBP14.65□□□□□ -0.06
HDAC4-213ENST00000496347 MRPL46Q9H2W6 279 aaKnown RBP14.65□□□□□ -0.06
HDAC4-213ENST00000496347 OR51B5Q9H339 312 aa14.65□□□□□ -0.06
HDAC4-213ENST00000496347 IPPKQ9H8X2 491 aa14.65□□□□□ -0.06
HDAC4-213ENST00000496347 FBXW2Q9UKT8 454 aa14.65□□□□□ -0.06
HDAC4-213ENST00000496347 KLF13Q9Y2Y9 288 aaPredicted RBP14.65□□□□□ -0.06
HDAC4-213ENST00000496347 TRIM49D1C9J1S8 452 aa14.64□□□□□ -0.07
HDAC4-213ENST00000496347 POC1B-GALNT4F8VUJ3 575 aa14.64□□□□□ -0.07
HDAC4-213ENST00000496347 FOXE1O00358 373 aaPredicted RBP14.64□□□□□ -0.07
HDAC4-213ENST00000496347 PLPP1O14494 284 aa14.64□□□□□ -0.07
HDAC4-213ENST00000496347 SMIM24O75264 130 aa14.64□□□□□ -0.07
HDAC4-213ENST00000496347 ZFAND5O76080 213 aa14.64□□□□□ -0.07
HDAC4-213ENST00000496347 SEMA3DO95025 777 aa14.64□□□□□ -0.07
HDAC4-213ENST00000496347 SIX3O95343 332 aaPredicted RBP14.64□□□□□ -0.07
HDAC4-213ENST00000496347 CLDN9O95484 217 aa14.64□□□□□ -0.07
HDAC4-213ENST00000496347 CLDN1O95832 211 aa14.64□□□□□ -0.07
HDAC4-213ENST00000496347 COX7A2P14406 83 aa14.64□□□□□ -0.07
HDAC4-213ENST00000496347 CPN2P22792 545 aa14.64□□□□□ -0.07
HDAC4-213ENST00000496347 PTX3P26022 381 aaPredicted RBP14.64□□□□□ -0.07
HDAC4-213ENST00000496347 IGLV3-21P80748 117 aaPredicted RBP14.64□□□□□ -0.07
HDAC4-213ENST00000496347 PLIN5Q00G26 463 aa14.64□□□□□ -0.07
HDAC4-213ENST00000496347 ALDH6A1Q02252 535 aaKnown RBP14.64□□□□□ -0.07
HDAC4-213ENST00000496347 CPSF6Q16630 551 aaKnown RBP eCLIP14.64□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms