RNA–Protein interactions for RNA: ENST00000494518.1

SKA1-205, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2

Gene SKA1, Length 746 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-205ENST00000494518 REXO4Q9GZR2 422 aaKnown RBP11.73□□□□□ -0.53
SKA1-205ENST00000494518 TRMT1Q9NXH9 659 aaKnown RBP11.73□□□□□ -0.53
SKA1-205ENST00000494518 MRPS33Q9Y291 106 aaKnown RBP11.73□□□□□ -0.53
SKA1-205ENST00000494518 CLCA3PQ9Y6N3 262 aa11.73□□□□□ -0.53
SKA1-205ENST00000494518 ACOT7O00154 380 aa11.72□□□□□ -0.53
SKA1-205ENST00000494518 RTCAO00442 366 aaKnown RBP11.72□□□□□ -0.53
SKA1-205ENST00000494518 CYR61O00622 381 aa11.72□□□□□ -0.53
SKA1-205ENST00000494518 PHGDHO43175 533 aaKnown RBP11.72□□□□□ -0.53
SKA1-205ENST00000494518 ZNF354AO60765 605 aaPredicted RBP11.72□□□□□ -0.53
SKA1-205ENST00000494518 CLEC3AO75596 197 aa11.72□□□□□ -0.53
SKA1-205ENST00000494518 TOXO94900 526 aa11.72□□□□□ -0.53
SKA1-205ENST00000494518 CELA3AP09093 270 aa11.72□□□□□ -0.53
SKA1-205ENST00000494518 IGFBP2P18065 325 aa11.72□□□□□ -0.53
SKA1-205ENST00000494518 TNNI3P19429 210 aa11.72□□□□□ -0.53
SKA1-205ENST00000494518 MAGEA5P43359 124 aa11.72□□□□□ -0.53
SKA1-205ENST00000494518 DNASE1L1P49184 302 aa11.72□□□□□ -0.53
SKA1-205ENST00000494518 HK2P52789 917 aa11.72□□□□□ -0.53
SKA1-205ENST00000494518 MTTPP55157 894 aa11.72□□□□□ -0.53
SKA1-205ENST00000494518 ARL4CP56559 192 aa11.72□□□□□ -0.53
SKA1-205ENST00000494518 MRPS25P82663 173 aaKnown RBP11.72□□□□□ -0.53
SKA1-205ENST00000494518 STX4Q12846 297 aa11.72□□□□□ -0.53
SKA1-205ENST00000494518 TGFBIQ15582 683 aa11.72□□□□□ -0.53
SKA1-205ENST00000494518 GXYLT1Q4G148 440 aa11.72□□□□□ -0.53
SKA1-205ENST00000494518 ABHD17CQ6PCB6 329 aa11.72□□□□□ -0.53
SKA1-205ENST00000494518 HSDL2Q6YN16 418 aa11.72□□□□□ -0.53
SKA1-205ENST00000494518 ZNF595Q8IYB9 648 aa11.72□□□□□ -0.53
SKA1-205ENST00000494518 TMEM132CQ8N3T6 1108 aa11.72□□□□□ -0.53
SKA1-205ENST00000494518 TTLQ8NG68 377 aa11.72□□□□□ -0.53
SKA1-205ENST00000494518 OR10Q1Q8NGQ4 319 aa11.72□□□□□ -0.53
SKA1-205ENST00000494518 LILRB4Q8NHJ6 448 aa11.72□□□□□ -0.53
SKA1-205ENST00000494518 DOK4Q8TEW6 326 aa11.72□□□□□ -0.53
SKA1-205ENST00000494518 PTPMT1Q8WUK0 201 aaPredicted RBP11.72□□□□□ -0.53
SKA1-205ENST00000494518 SLCO2A1Q92959 643 aa11.72□□□□□ -0.53
SKA1-205ENST00000494518 VPS39Q96JC1 886 aa11.72□□□□□ -0.53
SKA1-205ENST00000494518 SCYL1Q96KG9 808 aa11.72□□□□□ -0.53
SKA1-205ENST00000494518 SERINC2Q96SA4 455 aa11.72□□□□□ -0.53
SKA1-205ENST00000494518 SMC6Q96SB8 1091 aa11.72□□□□□ -0.53
SKA1-205ENST00000494518 ALOXE3Q9BYJ1 711 aa11.72□□□□□ -0.53
SKA1-205ENST00000494518 KCNJ16Q9NPI9 418 aa11.72□□□□□ -0.53
SKA1-205ENST00000494518 SMYD2Q9NRG4 433 aa11.72□□□□□ -0.53
SKA1-205ENST00000494518 DNAJC11Q9NVH1 559 aa11.72□□□□□ -0.53
SKA1-205ENST00000494518 MYOTQ9UBF9 498 aa11.72□□□□□ -0.53
SKA1-205ENST00000494518 ZNF490Q9ULM2 529 aaPredicted RBP11.72□□□□□ -0.53
SKA1-205ENST00000494518 DAPP1Q9UN19 280 aa11.72□□□□□ -0.53
SKA1-205ENST00000494518 PPIEQ9UNP9 301 aaKnown RBP11.72□□□□□ -0.53
SKA1-205ENST00000494518 MTO1Q9Y2Z2 717 aaKnown RBP11.72□□□□□ -0.53
SKA1-205ENST00000494518 MED12Q93074 2177 aa11.72□□□□□ -0.53
SKA1-205ENST00000494518 A0A088AWK7 358 aa11.71□□□□□ -0.53
SKA1-205ENST00000494518 ATP6AP2A0A1C7CYW4 349 aa11.71□□□□□ -0.53
SKA1-205ENST00000494518 C17orf105B2RV13 164 aa11.71□□□□□ -0.53
SKA1-205ENST00000494518 ATP6AP2O75787 350 aa11.71□□□□□ -0.53
SKA1-205ENST00000494518 KRT38O76015 456 aa11.71□□□□□ -0.53
SKA1-205ENST00000494518 CCL3P10147 92 aa11.71□□□□□ -0.53
SKA1-205ENST00000494518 CD22P20273 847 aa11.71□□□□□ -0.53
SKA1-205ENST00000494518 ZNF10P21506 573 aaPredicted RBP11.71□□□□□ -0.53
SKA1-205ENST00000494518 MSX1P28360 303 aa11.71□□□□□ -0.53
SKA1-205ENST00000494518 ART1P52961 327 aa11.71□□□□□ -0.53
SKA1-205ENST00000494518 SLC12A2P55011 1212 aa11.71□□□□□ -0.53
SKA1-205ENST00000494518 DR1Q01658 176 aa11.71□□□□□ -0.53
SKA1-205ENST00000494518 MYBPHQ13203 477 aa11.71□□□□□ -0.53
SKA1-205ENST00000494518 SNTB1Q13884 538 aaKnown RBP11.71□□□□□ -0.53
SKA1-205ENST00000494518 DOC2AQ14183 400 aa11.71□□□□□ -0.53
SKA1-205ENST00000494518 OR4D1Q15615 310 aa11.71□□□□□ -0.53
SKA1-205ENST00000494518 PAOXQ6QHF9 649 aa11.71□□□□□ -0.53
SKA1-205ENST00000494518 ZNF793Q6ZN11 406 aa11.71□□□□□ -0.53
SKA1-205ENST00000494518 SLC22A16Q86VW1 577 aa11.71□□□□□ -0.53
SKA1-205ENST00000494518 GPSM1Q86YR5 675 aa11.71□□□□□ -0.53
SKA1-205ENST00000494518 DMRTC2Q8IXT2 367 aaPredicted RBP11.71□□□□□ -0.53
SKA1-205ENST00000494518 TMEM251Q8N6I4 163 aa11.71□□□□□ -0.53
SKA1-205ENST00000494518 SLC2A12Q8TD20 617 aa11.71□□□□□ -0.53
SKA1-205ENST00000494518 DAZLQ92904 295 aaKnown RBP11.71□□□□□ -0.53
SKA1-205ENST00000494518 RUNDC3BQ96NL0 473 aa11.71□□□□□ -0.53
SKA1-205ENST00000494518 MAPKAP1Q9BPZ7 522 aa11.71□□□□□ -0.53
SKA1-205ENST00000494518 ZNF559Q9BR84 538 aa11.71□□□□□ -0.53
SKA1-205ENST00000494518 RHOJQ9H4E5 214 aa11.71□□□□□ -0.53
SKA1-205ENST00000494518 TUBA8Q9NY65 449 aaPredicted RBP11.71□□□□□ -0.53
SKA1-205ENST00000494518 FLNAP21333 2647 aaKnown RBP11.7□□□□□ -0.54
SKA1-205ENST00000494518 CXorf49A8MYA2 514 aaPredicted RBP11.7□□□□□ -0.54
SKA1-205ENST00000494518 SAP18O00422 153 aaKnown RBP11.7□□□□□ -0.54
SKA1-205ENST00000494518 CES2O00748 559 aa11.7□□□□□ -0.54
SKA1-205ENST00000494518 CCNT2O60583 730 aaKnown RBP11.7□□□□□ -0.54
SKA1-205ENST00000494518 CTNSO60931 367 aa11.7□□□□□ -0.54
SKA1-205ENST00000494518 GLSO94925 669 aaPredicted RBP11.7□□□□□ -0.54
SKA1-205ENST00000494518 SEC31AO94979 1220 aaKnown RBP11.7□□□□□ -0.54
SKA1-205ENST00000494518 ETHE1O95571 254 aa11.7□□□□□ -0.54
SKA1-205ENST00000494518 CCDC166P0CW27 439 aa11.7□□□□□ -0.54
SKA1-205ENST00000494518 ACVR2AP27037 513 aa11.7□□□□□ -0.54
SKA1-205ENST00000494518 MSH2P43246 934 aa11.7□□□□□ -0.54
SKA1-205ENST00000494518 RNF4P78317 190 aa11.7□□□□□ -0.54
SKA1-205ENST00000494518 ADPRMQ3LIE5 342 aa11.7□□□□□ -0.54
SKA1-205ENST00000494518 SPNS3Q6ZMD2 512 aa11.7□□□□□ -0.54
SKA1-205ENST00000494518 RTL4Q6ZR62 310 aa11.7□□□□□ -0.54
SKA1-205ENST00000494518 GK5Q6ZS86 529 aa11.7□□□□□ -0.54
SKA1-205ENST00000494518 FAM47EQ6ZV65 393 aa11.7□□□□□ -0.54
SKA1-205ENST00000494518 UBE3DQ7Z6J8 389 aa11.7□□□□□ -0.54
SKA1-205ENST00000494518 OR4N5Q8IXE1 308 aa11.7□□□□□ -0.54
SKA1-205ENST00000494518 GPALPP1Q8IXQ4 340 aa11.7□□□□□ -0.54
SKA1-205ENST00000494518 ZBED8Q8IZ13 594 aa11.7□□□□□ -0.54
SKA1-205ENST00000494518 RNF175Q8N4F7 328 aa11.7□□□□□ -0.54
SKA1-205ENST00000494518 OR14A16Q8NHC5 309 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms