RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 SNX7Q9UNH6 387 aa10.22□□□□□ -0.77
USP4-214ENST00000491791 NCKAP1Q9Y2A7 1128 aa10.22□□□□□ -0.77
USP4-214ENST00000491791 PCDHGA2Q9Y5H1 932 aa10.22□□□□□ -0.77
USP4-214ENST00000491791 KLK4Q9Y5K2 254 aa10.22□□□□□ -0.77
USP4-214ENST00000491791 HS3ST3A1Q9Y663 406 aa10.22□□□□□ -0.77
USP4-214ENST00000491791 COLEC10Q9Y6Z7 277 aa10.22□□□□□ -0.77
USP4-214ENST00000491791 EP300Q09472 2414 aaPredicted RBP10.22□□□□□ -0.77
USP4-214ENST00000491791 A6NCN8 305 aa10.21□□□□□ -0.77
USP4-214ENST00000491791 LATO43561 262 aa10.21□□□□□ -0.77
USP4-214ENST00000491791 NARSO43776 548 aaKnown RBP10.21□□□□□ -0.77
USP4-214ENST00000491791 HS6ST1O60243 411 aa10.21□□□□□ -0.77
USP4-214ENST00000491791 LCMT2O60294 686 aaKnown RBP10.21□□□□□ -0.77
USP4-214ENST00000491791 GUCY1B2O75343 617 aa10.21□□□□□ -0.77
USP4-214ENST00000491791 SEC14L2O76054 403 aa10.21□□□□□ -0.77
USP4-214ENST00000491791 EGFP01133 1207 aa10.21□□□□□ -0.77
USP4-214ENST00000491791 ETFAP13804 333 aa10.21□□□□□ -0.77
USP4-214ENST00000491791 HOXB2P14652 356 aa10.21□□□□□ -0.77
USP4-214ENST00000491791 NELFEP18615 380 aaKnown RBP10.21□□□□□ -0.77
USP4-214ENST00000491791 IGFBP5P24593 272 aa10.21□□□□□ -0.77
USP4-214ENST00000491791 RPL10P27635 214 aaKnown RBP10.21□□□□□ -0.77
USP4-214ENST00000491791 SLC5A2P31639 672 aa10.21□□□□□ -0.77
USP4-214ENST00000491791 PIGAP37287 484 aa10.21□□□□□ -0.77
USP4-214ENST00000491791 LIMS1P48059 325 aa10.21□□□□□ -0.77
USP4-214ENST00000491791 CDH15P55291 814 aa10.21□□□□□ -0.77
USP4-214ENST00000491791 CSNK2BP67870 215 aa10.21□□□□□ -0.77
USP4-214ENST00000491791 CD47Q08722 323 aa10.21□□□□□ -0.77
USP4-214ENST00000491791 HYAL2Q12891 473 aa10.21□□□□□ -0.77
USP4-214ENST00000491791 TSTA3Q13630 321 aaPredicted RBP10.21□□□□□ -0.77
USP4-214ENST00000491791 SCARB2Q14108 478 aa10.21□□□□□ -0.77
USP4-214ENST00000491791 NFATC4Q14934 902 aa10.21□□□□□ -0.77
USP4-214ENST00000491791 CEBPEQ15744 281 aa10.21□□□□□ -0.77
USP4-214ENST00000491791 IFI44LQ53G44 452 aa10.21□□□□□ -0.77
USP4-214ENST00000491791 EOGTQ5NDL2 527 aa10.21□□□□□ -0.77
USP4-214ENST00000491791 COX20Q5RI15 118 aa10.21□□□□□ -0.77
USP4-214ENST00000491791 MLIPQ5VWP3 458 aa10.21□□□□□ -0.77
USP4-214ENST00000491791 DHRS4L2Q6PKH6 230 aa10.21□□□□□ -0.77
USP4-214ENST00000491791 ZNF852Q6ZMS4 543 aa10.21□□□□□ -0.77
USP4-214ENST00000491791 GPR141Q7Z602 305 aa10.21□□□□□ -0.77
USP4-214ENST00000491791 ZNF605Q86T29 641 aa10.21□□□□□ -0.77
USP4-214ENST00000491791 FAM124AQ86V42 546 aa10.21□□□□□ -0.77
USP4-214ENST00000491791 OFCC1Q8IZS5 231 aa10.21□□□□□ -0.77
USP4-214ENST00000491791 HS3ST5Q8IZT8 346 aa10.21□□□□□ -0.77
USP4-214ENST00000491791 SLC44A3Q8N4M1 653 aa10.21□□□□□ -0.77
USP4-214ENST00000491791 MFSD9Q8NBP5 474 aa10.21□□□□□ -0.77
USP4-214ENST00000491791 ST13P5Q8NFI4 369 aaPredicted RBP10.21□□□□□ -0.77
USP4-214ENST00000491791 OR52E1Q8NGJ3 308 aa10.21□□□□□ -0.77
USP4-214ENST00000491791 OR4C15Q8NGM1 316 aa10.21□□□□□ -0.77
USP4-214ENST00000491791 APOBEC4Q8WW27 367 aaKnown RBP10.21□□□□□ -0.77
USP4-214ENST00000491791 CIDECQ96AQ7 238 aaPredicted RBP10.21□□□□□ -0.77
USP4-214ENST00000491791 TMIGD2Q96BF3 282 aa10.21□□□□□ -0.77
USP4-214ENST00000491791 TAMM41Q96BW9 452 aa10.21□□□□□ -0.77
USP4-214ENST00000491791 ZBED6CLQ96FA7 236 aaPredicted RBP10.21□□□□□ -0.77
USP4-214ENST00000491791 SIPA1Q96FS4 1042 aa10.21□□□□□ -0.77
USP4-214ENST00000491791 SHDQ96IW2 340 aa10.21□□□□□ -0.77
USP4-214ENST00000491791 MAGED4Q96JG8 741 aa10.21□□□□□ -0.77
USP4-214ENST00000491791 OR2M4Q96R27 311 aa10.21□□□□□ -0.77
USP4-214ENST00000491791 ACAT2Q9BWD1 397 aa10.21□□□□□ -0.77
USP4-214ENST00000491791 CHRDQ9H2X0 955 aa10.21□□□□□ -0.77
USP4-214ENST00000491791 DUSP21Q9H596 190 aa10.21□□□□□ -0.77
USP4-214ENST00000491791 SOX17Q9H6I2 414 aaPredicted RBP10.21□□□□□ -0.77
USP4-214ENST00000491791 CXorf36Q9H7Y0 433 aa10.21□□□□□ -0.77
USP4-214ENST00000491791 TBC1D17Q9HA65 648 aa10.21□□□□□ -0.77
USP4-214ENST00000491791 FGF22Q9HCT0 170 aa10.21□□□□□ -0.77
USP4-214ENST00000491791 TRNAU1APQ9NX07 287 aaKnown RBP10.21□□□□□ -0.77
USP4-214ENST00000491791 NDUFAF4Q9P032 175 aa10.21□□□□□ -0.77
USP4-214ENST00000491791 ANKMY1Q9P2S6 941 aa10.21□□□□□ -0.77
USP4-214ENST00000491791 CA14Q9ULX7 337 aa10.21□□□□□ -0.77
USP4-214ENST00000491791 ANGPT4Q9Y264 503 aa10.21□□□□□ -0.77
USP4-214ENST00000491791 SAMHD1Q9Y3Z3 626 aaKnown RBP10.21□□□□□ -0.77
USP4-214ENST00000491791 TBC1D3DA0A087WVF3 549 aa10.2□□□□□ -0.78
USP4-214ENST00000491791 TBC1D3IA0A087WXS9 549 aa10.2□□□□□ -0.78
USP4-214ENST00000491791 TBC1D3EA0A087X179 549 aa10.2□□□□□ -0.78
USP4-214ENST00000491791 TBC1D3KA0A087X1G2 549 aa10.2□□□□□ -0.78
USP4-214ENST00000491791 PRSS38A1L453 326 aa10.2□□□□□ -0.78
USP4-214ENST00000491791 EME2A4GXA9 379 aaPredicted RBP10.2□□□□□ -0.78
USP4-214ENST00000491791 TBC1D3FA6NER0 549 aaPredicted RBP10.2□□□□□ -0.78
USP4-214ENST00000491791 TBC1D3LB9A6J9 549 aa10.2□□□□□ -0.78
USP4-214ENST00000491791 SAP18O00422 153 aaKnown RBP10.2□□□□□ -0.78
USP4-214ENST00000491791 PDPK1O15530 556 aa10.2□□□□□ -0.78
USP4-214ENST00000491791 TNFSF14O43557 240 aa10.2□□□□□ -0.78
USP4-214ENST00000491791 OR1F1O43749 312 aa10.2□□□□□ -0.78
USP4-214ENST00000491791 TMPRSS11DO60235 418 aa10.2□□□□□ -0.78
USP4-214ENST00000491791 ZNF292O60281 2723 aa10.2□□□□□ -0.78
USP4-214ENST00000491791 NDUFS2O75306 463 aa10.2□□□□□ -0.78
USP4-214ENST00000491791 SH3BGRLO75368 114 aa10.2□□□□□ -0.78
USP4-214ENST00000491791 TRMUO75648 421 aaKnown RBP10.2□□□□□ -0.78
USP4-214ENST00000491791 KLF8O95600 359 aaPredicted RBP10.2□□□□□ -0.78
USP4-214ENST00000491791 TFPTP0C1Z6 253 aa10.2□□□□□ -0.78
USP4-214ENST00000491791 TBC1D3HP0C7X1 549 aa10.2□□□□□ -0.78
USP4-214ENST00000491791 GRK3P35626 688 aa10.2□□□□□ -0.78
USP4-214ENST00000491791 CRATP43155 626 aa10.2□□□□□ -0.78
USP4-214ENST00000491791 XCR1P46094 333 aa10.2□□□□□ -0.78
USP4-214ENST00000491791 PRIM2P49643 509 aa10.2□□□□□ -0.78
USP4-214ENST00000491791 DSTNP60981 165 aa10.2□□□□□ -0.78
USP4-214ENST00000491791 CDK5R2Q13319 367 aa10.2□□□□□ -0.78
USP4-214ENST00000491791 PLCL1Q15111 1095 aa10.2□□□□□ -0.78
USP4-214ENST00000491791 ZIK1Q3SY52 487 aaPredicted RBP10.2□□□□□ -0.78
USP4-214ENST00000491791 PRAMEF8Q5VWM4 474 aa10.2□□□□□ -0.78
USP4-214ENST00000491791 PRAMEF7Q5VXH5 474 aa10.2□□□□□ -0.78
USP4-214ENST00000491791 TBC1D3GQ6DHY5 549 aa10.2□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms