RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 ATPIF1Q9UII2 106 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 RASAL2Q9UJF2 1139 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 LAMP5Q9UJQ1 280 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 GPR34Q9UPC5 381 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 SATB2Q9UPW6 733 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 CHMP2BQ9UQN3 213 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 C15orf41Q9Y2V0 281 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 L3MBTL1Q9Y468 752 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 RIPK3Q9Y572 518 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 NME7Q9Y5B8 376 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 PRSS21Q9Y6M0 314 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 CEMIPQ8WUJ3 1361 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 POLQO75417 2590 aa1.93□□□□□ -2.1
HMGB1-208ENST00000490788 MROH7Q68CQ1 1323 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 CCDC171Q6TFL3 1326 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 SPTA1P02549 2419 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 EDC4Q6P2E9 1401 aaKnown RBP1.92□□□□□ -2.1
HMGB1-208ENST00000490788 FRYQ5TBA9 3013 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 IGF2RP11717 2491 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 RLFQ13129 1914 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 IGLV7-46A0A075B6I9 117 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 TRAV6A0A075B6T7 132 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 GPR75-ASB3A0A0A6YYF3 556 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 A0A1B0GVL5 298 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 LRRD1A4D1F6 860 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 GOLGA8IPA6NC78 632 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 TSPY2A6NKD2 308 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 USP27XA6NNY8 438 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 AGAP14A8MT82 685 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 TCP10L2B9ZVM9 353 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 SPECC1L-ADORA2AF8WAN1 911 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 H0YC42 278 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 HAT1O14929 419 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 EPHB6O15197 1021 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 PAPSS1O43252 624 aaPredicted RBP1.92□□□□□ -2.1
HMGB1-208ENST00000490788 AP5Z1O43299 807 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 RNASEH1O60930 286 aaKnown RBP1.92□□□□□ -2.1
HMGB1-208ENST00000490788 ZNF821O75541 412 aaPredicted RBP1.92□□□□□ -2.1
HMGB1-208ENST00000490788 NXPH2O95156 264 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 LCA5LO95447 670 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 MBD3O95983 291 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 OR2T7P0C7T2 308 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 TSPY3P0CV98 308 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 TSPY8P0CW00 308 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 MYL6BP14649 208 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 PRKACAP17612 351 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 CEBPBP17676 345 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 CA4P22748 312 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 DNASE1P24855 282 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 PSMA3P25788 255 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 CCT6AP40227 531 aaKnown RBP1.92□□□□□ -2.1
HMGB1-208ENST00000490788 MNDAP41218 407 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 PPP1R2P41236 205 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 MTHFRP42898 656 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 ACADSBP45954 432 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 TAF6P49848 677 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 AP3M2P53677 418 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 EVCP57679 992 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 MYL6P60660 151 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 DSTNP60981 165 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 BASP1P80723 227 aaKnown RBP1.92□□□□□ -2.1
HMGB1-208ENST00000490788 TSPY1Q01534 308 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 PPARDQ03181 441 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 CETN1Q12798 172 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 HSPB3Q12988 150 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 STK4Q13043 487 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 COG2Q14746 738 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 SNAPC1Q16533 368 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 ODF4Q2M2E3 257 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 CCDC153Q494R4 210 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 TAF1BQ53T94 588 aaPredicted RBP1.92□□□□□ -2.1
HMGB1-208ENST00000490788 HSP90AA4PQ58FG1 418 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 C6orf183Q5T699 404 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 METTL11BQ5VVY1 283 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 SPATA1Q5VX52 437 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 BSPRYQ5W0U4 402 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 TMEM211Q6ICI0 200 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 ZSCAN25Q6NSZ9 544 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 NEPROQ6NW34 567 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 PPP1R2P3Q6NXS1 205 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 CFAP161Q6P656 301 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 CYB5D1Q6P9G0 228 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 BHLHB9Q6PI77 547 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 ZNF497Q6ZNH5 498 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 Q6ZSR9 355 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 NLRP9Q7RTR0 991 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 CATSPER4Q7RTX7 472 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 ANKRD33Q7Z3H0 272 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 NOTCH2NLQ7Z3S9 236 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 DEFB128Q7Z7B8 93 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 LUZP1Q86V48 1076 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 DNAAF5Q86Y56 855 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 GUF1Q8N442 669 aaKnown RBP1.92□□□□□ -2.1
HMGB1-208ENST00000490788 CARNMT1Q8N4J0 409 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 MINDY1Q8N5J2 469 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 BBOF1Q8ND07 529 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 GPRC5AQ8NFJ5 357 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 TSPAN14Q8NG11 270 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 OR13C3Q8NGS6 347 aa1.92□□□□□ -2.1
HMGB1-208ENST00000490788 OR13J1Q8NGT2 312 aa1.92□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms