RNA–Protein interactions for RNA: ENST00000490283.1

SEC13-218, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

TSL 2

Gene SEC13, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-218ENST00000490283 ZNF793Q6ZN11 406 aa16.3■□□□□ 0.2
SEC13-218ENST00000490283 UBE3DQ7Z6J8 389 aa16.3■□□□□ 0.2
SEC13-218ENST00000490283 CNPY4Q8N129 248 aa16.3■□□□□ 0.2
SEC13-218ENST00000490283 PLD6Q8N2A8 252 aaKnown RBP16.3■□□□□ 0.2
SEC13-218ENST00000490283 TMEM52Q8NDY8 209 aa16.3■□□□□ 0.2
SEC13-218ENST00000490283 DCAKDQ8WVC6 231 aa16.3■□□□□ 0.2
SEC13-218ENST00000490283 PHF21BQ96EK2 531 aa16.3■□□□□ 0.2
SEC13-218ENST00000490283 MTERF1Q99551 399 aaKnown RBP16.3■□□□□ 0.2
SEC13-218ENST00000490283 MRPL57Q9BQC6 102 aaKnown RBP16.3■□□□□ 0.2
SEC13-218ENST00000490283 ALOXE3Q9BYJ1 711 aa16.3■□□□□ 0.2
SEC13-218ENST00000490283 XPR1Q9UBH6 696 aa16.3■□□□□ 0.2
SEC13-218ENST00000490283 SEC14L3Q9UDX4 400 aa16.3■□□□□ 0.2
SEC13-218ENST00000490283 PLEKHB1Q9UF11 243 aaPredicted RBP16.3■□□□□ 0.2
SEC13-218ENST00000490283 PHF11Q9UIL8 331 aa16.3■□□□□ 0.2
SEC13-218ENST00000490283 SCN2AQ99250 2005 aa16.29■□□□□ 0.2
SEC13-218ENST00000490283 CPAMD8Q8IZJ3 1885 aa16.29■□□□□ 0.2
SEC13-218ENST00000490283 A0A1B0GUH1 482 aa16.29■□□□□ 0.2
SEC13-218ENST00000490283 LRRC14BA6NHZ5 514 aa16.29■□□□□ 0.2
SEC13-218ENST00000490283 STX16-NPEPL1H3BU86 382 aa16.29■□□□□ 0.2
SEC13-218ENST00000490283 STX16O14662 325 aa16.29■□□□□ 0.2
SEC13-218ENST00000490283 DYRK3O43781 588 aa16.29■□□□□ 0.2
SEC13-218ENST00000490283 SLC25A12O75746 678 aa16.29■□□□□ 0.2
SEC13-218ENST00000490283 SCELO95171 688 aa16.29■□□□□ 0.2
SEC13-218ENST00000490283 SIX3O95343 332 aaPredicted RBP16.29■□□□□ 0.2
SEC13-218ENST00000490283 SP1P08047 785 aa16.29■□□□□ 0.2
SEC13-218ENST00000490283 RHOXF2BP0C7M4 288 aa16.29■□□□□ 0.2
SEC13-218ENST00000490283 COX7A2P14406 83 aa16.29■□□□□ 0.2
SEC13-218ENST00000490283 TLX1P31314 330 aaPredicted RBP16.29■□□□□ 0.2
SEC13-218ENST00000490283 ARFIP1P53367 373 aa16.29■□□□□ 0.2
SEC13-218ENST00000490283 MAPKAPK3Q16644 382 aa16.29■□□□□ 0.2
SEC13-218ENST00000490283 SLC25A25Q6KCM7 469 aa16.29■□□□□ 0.2
SEC13-218ENST00000490283 TMEM156Q8N614 296 aa16.29■□□□□ 0.2
SEC13-218ENST00000490283 APCDD1LQ8NCL9 501 aa16.29■□□□□ 0.2
SEC13-218ENST00000490283 OR14A16Q8NHC5 309 aa16.29■□□□□ 0.2
SEC13-218ENST00000490283 THAP3Q8WTV1 239 aaPredicted RBP16.29■□□□□ 0.2
SEC13-218ENST00000490283 NCLNQ969V3 563 aa16.29■□□□□ 0.2
SEC13-218ENST00000490283 MTBPQ96DY7 904 aa16.29■□□□□ 0.2
SEC13-218ENST00000490283 SCMH1Q96GD3 660 aa16.29■□□□□ 0.2
SEC13-218ENST00000490283 MAPKAP1Q9BPZ7 522 aa16.29■□□□□ 0.2
SEC13-218ENST00000490283 RHOXF2Q9BQY4 288 aa16.29■□□□□ 0.2
SEC13-218ENST00000490283 MRPL46Q9H2W6 279 aaKnown RBP16.29■□□□□ 0.2
SEC13-218ENST00000490283 NOL11Q9H8H0 719 aaKnown RBP16.29■□□□□ 0.2
SEC13-218ENST00000490283 ZNF358Q9NW07 568 aa16.29■□□□□ 0.2
SEC13-218ENST00000490283 KCMF1Q9P0J7 381 aa16.29■□□□□ 0.2
SEC13-218ENST00000490283 PPIEQ9UNP9 301 aaKnown RBP16.29■□□□□ 0.2
SEC13-218ENST00000490283 PRRC2CQ9Y520 2896 aaKnown RBP16.28■□□□□ 0.2
SEC13-218ENST00000490283 USP9XQ93008 2570 aaPredicted RBP16.28■□□□□ 0.2
SEC13-218ENST00000490283 LRRTM2O43300 516 aa16.28■□□□□ 0.2
SEC13-218ENST00000490283 ZFAND5O76080 213 aa16.28■□□□□ 0.2
SEC13-218ENST00000490283 UNC5CO95185 931 aa16.28■□□□□ 0.2
SEC13-218ENST00000490283 LDLRP01130 860 aa16.28■□□□□ 0.2
SEC13-218ENST00000490283 PPP2R1BP30154 601 aa16.28■□□□□ 0.2
SEC13-218ENST00000490283 BUD31P41223 144 aaPredicted RBP16.28■□□□□ 0.2
SEC13-218ENST00000490283 ST13P50502 369 aaKnown RBP16.28■□□□□ 0.2
SEC13-218ENST00000490283 HLCSP50747 726 aa16.28■□□□□ 0.2
SEC13-218ENST00000490283 TDGF1P3P51864 188 aa16.28■□□□□ 0.2
SEC13-218ENST00000490283 KCNK10P57789 538 aa16.28■□□□□ 0.2
SEC13-218ENST00000490283 RPS13P62277 151 aaKnown RBP16.28■□□□□ 0.2
SEC13-218ENST00000490283 PMP22Q01453 160 aa16.28■□□□□ 0.2
SEC13-218ENST00000490283 ALDH6A1Q02252 535 aaKnown RBP16.28■□□□□ 0.2
SEC13-218ENST00000490283 SLAMF1Q13291 335 aa16.28■□□□□ 0.2
SEC13-218ENST00000490283 TTC19Q6DKK2 380 aaPredicted RBP16.28■□□□□ 0.2
SEC13-218ENST00000490283 GALNTL5Q7Z4T8 443 aa16.28■□□□□ 0.2
SEC13-218ENST00000490283 L3MBTL4Q8NA19 623 aa16.28■□□□□ 0.2
SEC13-218ENST00000490283 MORN4Q8NDC4 146 aa16.28■□□□□ 0.2
SEC13-218ENST00000490283 VTI1BQ9UEU0 232 aa16.28■□□□□ 0.2
SEC13-218ENST00000490283 IQANK1A0A1B0GTG1 560 aa16.27■□□□□ 0.2
SEC13-218ENST00000490283 A1L4Q6 167 aa16.27■□□□□ 0.2
SEC13-218ENST00000490283 TGFBR3LH3BV60 316 aa16.27■□□□□ 0.2
SEC13-218ENST00000490283 PLPP1O14494 284 aa16.27■□□□□ 0.2
SEC13-218ENST00000490283 LDB3O75112 727 aa16.27■□□□□ 0.2
SEC13-218ENST00000490283 ITGA10O75578 1167 aa16.27■□□□□ 0.2
SEC13-218ENST00000490283 NEURL1O76050 574 aa16.27■□□□□ 0.2
SEC13-218ENST00000490283 STSP08842 583 aa16.27■□□□□ 0.2
SEC13-218ENST00000490283 TAC1P20366 129 aa16.27■□□□□ 0.2
SEC13-218ENST00000490283 TRHRP34981 398 aaPredicted RBP16.27■□□□□ 0.2
SEC13-218ENST00000490283 SSR4P51571 173 aa16.27■□□□□ 0.2
SEC13-218ENST00000490283 CASP6P55212 293 aa16.27■□□□□ 0.2
SEC13-218ENST00000490283 BIKQ13323 160 aa16.27■□□□□ 0.2
SEC13-218ENST00000490283 CUL3Q13618 768 aa16.27■□□□□ 0.2
SEC13-218ENST00000490283 ZRSR2Q15696 482 aaKnown RBP16.27■□□□□ 0.2
SEC13-218ENST00000490283 ZNF800Q2TB10 664 aaPredicted RBP eCLIP16.27■□□□□ 0.2
SEC13-218ENST00000490283 C10orf62Q5T681 223 aaPredicted RBP16.27■□□□□ 0.2
SEC13-218ENST00000490283 CYP20A1Q6UW02 462 aa16.27■□□□□ 0.2
SEC13-218ENST00000490283 GPR180Q86V85 440 aa16.27■□□□□ 0.2
SEC13-218ENST00000490283 ARMC10Q8N2F6 343 aa16.27■□□□□ 0.2
SEC13-218ENST00000490283 ZCCHC7Q8N3Z6 543 aaKnown RBP16.27■□□□□ 0.2
SEC13-218ENST00000490283 DGAT2Q96PD7 388 aa16.27■□□□□ 0.2
SEC13-218ENST00000490283 HES7Q9BYE0 225 aa16.27■□□□□ 0.2
SEC13-218ENST00000490283 WDR41Q9HAD4 459 aa16.27■□□□□ 0.2
SEC13-218ENST00000490283 LYARQ9NX58 379 aaKnown RBP16.27■□□□□ 0.2
SEC13-218ENST00000490283 COPS7AQ9UBW8 275 aa16.27■□□□□ 0.2
SEC13-218ENST00000490283 PCTPQ9UKL6 214 aa16.27■□□□□ 0.2
SEC13-218ENST00000490283 KLF13Q9Y2Y9 288 aaPredicted RBP16.27■□□□□ 0.2
SEC13-218ENST00000490283 RNF11Q9Y3C5 154 aa16.27■□□□□ 0.2
SEC13-218ENST00000490283 C17orf105B2RV13 164 aa16.26■□□□□ 0.19
SEC13-218ENST00000490283 FOXE1O00358 373 aaPredicted RBP16.26■□□□□ 0.19
SEC13-218ENST00000490283 RIPK2O43353 540 aa16.26■□□□□ 0.19
SEC13-218ENST00000490283 NME2P1O60361 137 aa16.26■□□□□ 0.19
SEC13-218ENST00000490283 NME2P22392 152 aa16.26■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms