RNA–Protein interactions for RNA: ENST00000489979.1

VARS-227, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 658 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-227ENST00000489979 FREM3P0C091 2139 aa12.91□□□□□ -0.34
VARS-227ENST00000489979 FN1P02751 2386 aaKnown RBP12.9□□□□□ -0.34
VARS-227ENST00000489979 HSPB2A8KAH6 182 aa12.9□□□□□ -0.34
VARS-227ENST00000489979 HCN1O60741 890 aa12.9□□□□□ -0.34
VARS-227ENST00000489979 ATE1O95260 518 aa12.9□□□□□ -0.34
VARS-227ENST00000489979 HNRNPH1P31943 449 aaKnown RBP12.9□□□□□ -0.34
VARS-227ENST00000489979 KEAP1Q14145 624 aa12.9□□□□□ -0.34
VARS-227ENST00000489979 HSPB2Q16082 182 aa12.9□□□□□ -0.34
VARS-227ENST00000489979 BBS9Q3SYG4 887 aa12.9□□□□□ -0.34
VARS-227ENST00000489979 SEM1Q6ZVN7 128 aa12.9□□□□□ -0.34
VARS-227ENST00000489979 TAOK1Q7L7X3 1001 aa12.9□□□□□ -0.34
VARS-227ENST00000489979 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP12.9□□□□□ -0.347e-7■■■■■ 43.5
VARS-227ENST00000489979 ZNF595Q8IYB9 648 aa12.9□□□□□ -0.34
VARS-227ENST00000489979 MORN4Q8NDC4 146 aa12.9□□□□□ -0.34
VARS-227ENST00000489979 PTPMT1Q8WUK0 201 aaPredicted RBP12.9□□□□□ -0.34
VARS-227ENST00000489979 DAZLQ92904 295 aaKnown RBP12.9□□□□□ -0.34
VARS-227ENST00000489979 RNASE6Q93091 150 aaKnown RBP12.9□□□□□ -0.34
VARS-227ENST00000489979 MS4A6EQ96DS6 147 aa12.9□□□□□ -0.34
VARS-227ENST00000489979 C18orf12Q96KH6 178 aa12.9□□□□□ -0.34
VARS-227ENST00000489979 SH3GL2Q99962 352 aa12.9□□□□□ -0.34
VARS-227ENST00000489979 OR8D2Q9GZM6 311 aa12.9□□□□□ -0.34
VARS-227ENST00000489979 HOMER3Q9NSC5 361 aa12.9□□□□□ -0.34
VARS-227ENST00000489979 IKZF3Q9UKT9 509 aa12.9□□□□□ -0.34
VARS-227ENST00000489979 SLC22A14Q9Y267 594 aa12.9□□□□□ -0.34
VARS-227ENST00000489979 MRPS33Q9Y291 106 aaKnown RBP12.9□□□□□ -0.34
VARS-227ENST00000489979 ATG4BQ9Y4P1 393 aa12.9□□□□□ -0.34
VARS-227ENST00000489979 NINQ8N4C6 2090 aa12.9□□□□□ -0.34
VARS-227ENST00000489979 JMJD1CQ15652 2540 aa12.9□□□□□ -0.34
VARS-227ENST00000489979 LRIT2A6NDA9 550 aa12.89□□□□□ -0.35
VARS-227ENST00000489979 ERI3O43414 337 aaKnown RBP12.89□□□□□ -0.35
VARS-227ENST00000489979 B3GALT2O43825 422 aa12.89□□□□□ -0.35
VARS-227ENST00000489979 AHSGP02765 367 aa12.89□□□□□ -0.35
VARS-227ENST00000489979 ENO2P09104 434 aaPredicted RBP12.89□□□□□ -0.35
VARS-227ENST00000489979 INHBBP09529 407 aa12.89□□□□□ -0.35
VARS-227ENST00000489979 BMP5P22003 454 aa12.89□□□□□ -0.35
VARS-227ENST00000489979 TACR1P25103 407 aa12.89□□□□□ -0.35
VARS-227ENST00000489979 ADSLP30566 484 aaPredicted RBP12.89□□□□□ -0.35
VARS-227ENST00000489979 PIGAP37287 484 aa12.89□□□□□ -0.35
VARS-227ENST00000489979 MAGEA3P43357 314 aa12.89□□□□□ -0.35
VARS-227ENST00000489979 ASCL1P50553 236 aa12.89□□□□□ -0.35
VARS-227ENST00000489979 RNF4P78317 190 aa12.89□□□□□ -0.35
VARS-227ENST00000489979 PDAP1Q13442 181 aaKnown RBP12.89□□□□□ -0.35
VARS-227ENST00000489979 DAZAP2Q15038 168 aaPredicted RBP12.89□□□□□ -0.35
VARS-227ENST00000489979 FBXW10Q5XX13 1052 aa12.89□□□□□ -0.35
VARS-227ENST00000489979 TMEM198Q66K66 360 aa12.89□□□□□ -0.35
VARS-227ENST00000489979 OPN5Q6U736 354 aa12.89□□□□□ -0.35
VARS-227ENST00000489979 SBSNQ6UWP8 590 aa12.89□□□□□ -0.35
VARS-227ENST00000489979 KLHDC8AQ8IYD2 350 aa12.89□□□□□ -0.35
VARS-227ENST00000489979 OR14A16Q8NHC5 309 aa12.89□□□□□ -0.35
VARS-227ENST00000489979 CCT6BQ92526 530 aa12.89□□□□□ -0.35
VARS-227ENST00000489979 LRRC46Q96FV0 321 aa12.89□□□□□ -0.35
VARS-227ENST00000489979 CAPZA3Q96KX2 299 aa12.89□□□□□ -0.35
VARS-227ENST00000489979 CSF3RQ99062 836 aa12.89□□□□□ -0.35
VARS-227ENST00000489979 TRMT1Q9NXH9 659 aaKnown RBP12.89□□□□□ -0.35
VARS-227ENST00000489979 KCNE2Q9Y6J6 123 aa12.89□□□□□ -0.35
VARS-227ENST00000489979 SEC23IPQ9Y6Y8 1000 aaKnown RBP12.89□□□□□ -0.35
VARS-227ENST00000489979 C17orf105B2RV13 164 aa12.88□□□□□ -0.35
VARS-227ENST00000489979 CYR61O00622 381 aa12.88□□□□□ -0.35
VARS-227ENST00000489979 DVL2O14641 736 aa12.88□□□□□ -0.35
VARS-227ENST00000489979 CTNSO60931 367 aa12.88□□□□□ -0.35
VARS-227ENST00000489979 RFPL3SP0C7P2 107 aa12.88□□□□□ -0.35
VARS-227ENST00000489979 TNNI3P19429 210 aa12.88□□□□□ -0.35
VARS-227ENST00000489979 HOXC12P31275 282 aa12.88□□□□□ -0.35
VARS-227ENST00000489979 PLA2G16P53816 162 aa12.88□□□□□ -0.35
VARS-227ENST00000489979 LIM2P55344 173 aa12.88□□□□□ -0.35
VARS-227ENST00000489979 CRYMQ14894 314 aa12.88□□□□□ -0.35
VARS-227ENST00000489979 TTC27Q6P3X3 843 aa12.88□□□□□ -0.35
VARS-227ENST00000489979 CLEC9AQ6UXN8 241 aa12.88□□□□□ -0.35
VARS-227ENST00000489979 ULK2Q8IYT8 1036 aa12.88□□□□□ -0.35
VARS-227ENST00000489979 NAXEQ8NCW5 288 aa12.88□□□□□ -0.35
VARS-227ENST00000489979 OR5L2Q8NGL0 311 aa12.88□□□□□ -0.35
VARS-227ENST00000489979 OR8K3Q8NH51 312 aa12.88□□□□□ -0.35
VARS-227ENST00000489979 SLC2A12Q8TD20 617 aa12.88□□□□□ -0.35
VARS-227ENST00000489979 QRFPRQ96P65 431 aa12.88□□□□□ -0.35
VARS-227ENST00000489979 ALOXE3Q9BYJ1 711 aa12.88□□□□□ -0.35
VARS-227ENST00000489979 VTI1BQ9UEU0 232 aa12.88□□□□□ -0.35
VARS-227ENST00000489979 A0A088AWK7 358 aa12.87□□□□□ -0.35
VARS-227ENST00000489979 SYNDIG1LA6NDD5 238 aa12.87□□□□□ -0.35
VARS-227ENST00000489979 KDM4EB2RXH2 506 aaPredicted RBP12.87□□□□□ -0.35
VARS-227ENST00000489979 H2AFYO75367 372 aaKnown RBP12.87□□□□□ -0.35
VARS-227ENST00000489979 CCDC175P0C221 793 aa12.87□□□□□ -0.35
VARS-227ENST00000489979 EPXP11678 715 aa12.87□□□□□ -0.35
VARS-227ENST00000489979 ZNF10P21506 573 aaPredicted RBP12.87□□□□□ -0.35
VARS-227ENST00000489979 CERS1P27544 350 aa12.87□□□□□ -0.35
VARS-227ENST00000489979 CXCR5P32302 372 aa12.87□□□□□ -0.35
VARS-227ENST00000489979 WNT3P56703 355 aa12.87□□□□□ -0.35
VARS-227ENST00000489979 ASPHQ12797 758 aa12.87□□□□□ -0.35
VARS-227ENST00000489979 STX4Q12846 297 aa12.87□□□□□ -0.35
VARS-227ENST00000489979 FBXL19-AS1Q494R0 122 aa12.87□□□□□ -0.35
VARS-227ENST00000489979 PIGGQ5H8A4 983 aa12.87□□□□□ -0.35
VARS-227ENST00000489979 TMIGD1Q6UXZ0 262 aa12.87□□□□□ -0.35
VARS-227ENST00000489979 CHSY3Q70JA7 882 aa12.87□□□□□ -0.35
VARS-227ENST00000489979 KRTAP1-3Q8IUG1 177 aa12.87□□□□□ -0.35
VARS-227ENST00000489979 FBXW8Q8N3Y1 598 aa12.87□□□□□ -0.35
VARS-227ENST00000489979 GPATCH11Q8N954 259 aa12.87□□□□□ -0.35
VARS-227ENST00000489979 TNIP2Q8NFZ5 429 aa12.87□□□□□ -0.35
VARS-227ENST00000489979 TTLQ8NG68 377 aa12.87□□□□□ -0.35
VARS-227ENST00000489979 GABPB2Q8TAK5 448 aaPredicted RBP12.87□□□□□ -0.35
VARS-227ENST00000489979 ARSGQ96EG1 525 aa12.87□□□□□ -0.35
VARS-227ENST00000489979 SLC6A15Q9H2J7 730 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms