RNA–Protein interactions for RNA: ENST00000489573.5

SMC4-221, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 1 (best)

Gene SMC4, Length 1,553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-221ENST00000489573 PDPK1O15530 556 aa20.49■□□□□ 0.87
SMC4-221ENST00000489573 NR2F6P10588 404 aa20.49■□□□□ 0.87
SMC4-221ENST00000489573 NELFEP18615 380 aaKnown RBP20.49■□□□□ 0.87
SMC4-221ENST00000489573 TNFRSF17Q02223 184 aa20.49■□□□□ 0.87
SMC4-221ENST00000489573 RUNX2Q13950 521 aa20.49■□□□□ 0.87
SMC4-221ENST00000489573 SELPLGQ14242 412 aa20.49■□□□□ 0.87
SMC4-221ENST00000489573 CLPPQ16740 277 aaPredicted RBP20.49■□□□□ 0.87
SMC4-221ENST00000489573 GARNL3Q5VVW2 1013 aa20.49■□□□□ 0.87
SMC4-221ENST00000489573 C18orf63Q68DL7 685 aa20.49■□□□□ 0.87
SMC4-221ENST00000489573 TMPRSS9Q7Z410 1059 aa20.49■□□□□ 0.87
SMC4-221ENST00000489573 UCN3Q969E3 161 aa20.49■□□□□ 0.87
SMC4-221ENST00000489573 EXOSC8Q96B26 276 aaKnown RBP20.49■□□□□ 0.87
SMC4-221ENST00000489573 C10orf90Q96M02 699 aa20.49■□□□□ 0.87
SMC4-221ENST00000489573 CPPED1Q9BRF8 314 aaPredicted RBP20.49■□□□□ 0.87
SMC4-221ENST00000489573 LYRM4Q9HD34 91 aa20.49■□□□□ 0.87
SMC4-221ENST00000489573 C5AR2Q9P296 337 aa20.49■□□□□ 0.87
SMC4-221ENST00000489573 DAPP1Q9UN19 280 aa20.49■□□□□ 0.87
SMC4-221ENST00000489573 PCDHGB4Q9UN71 923 aa20.49■□□□□ 0.87
SMC4-221ENST00000489573 A0A1W2PRB8 838 aa20.48■□□□□ 0.87
SMC4-221ENST00000489573 FITM1A5D6W6 292 aa20.48■□□□□ 0.87
SMC4-221ENST00000489573 MGRN1O60291 552 aa20.48■□□□□ 0.87
SMC4-221ENST00000489573 PRKRAO75569 313 aaKnown RBP20.48■□□□□ 0.87
SMC4-221ENST00000489573 LDOC1O95751 146 aaPredicted RBP20.48■□□□□ 0.87
SMC4-221ENST00000489573 C6orf47O95873 294 aa20.48■□□□□ 0.87
SMC4-221ENST00000489573 ANKRD34CP0C6C1 535 aa20.48■□□□□ 0.87
SMC4-221ENST00000489573 ZCCHC18P0CG32 403 aa20.48■□□□□ 0.87
SMC4-221ENST00000489573 HSD17B1P14061 328 aa20.48■□□□□ 0.87
SMC4-221ENST00000489573 TCN1P20061 433 aaPredicted RBP20.48■□□□□ 0.87
SMC4-221ENST00000489573 CPN2P22792 545 aa20.48■□□□□ 0.87
SMC4-221ENST00000489573 BUD31P41223 144 aaPredicted RBP20.48■□□□□ 0.87
SMC4-221ENST00000489573 LIM2P55344 173 aa20.48■□□□□ 0.87
SMC4-221ENST00000489573 SF3A2Q15428 464 aaKnown RBP20.48■□□□□ 0.87
SMC4-221ENST00000489573 ZNF574Q6ZN55 896 aaPredicted RBP20.48■□□□□ 0.87
SMC4-221ENST00000489573 TTC29Q8NA56 475 aaPredicted RBP20.48■□□□□ 0.87
SMC4-221ENST00000489573 FAM156AQ8NDB6 213 aa20.48■□□□□ 0.87
SMC4-221ENST00000489573 GOT1L1Q8NHS2 421 aaPredicted RBP20.48■□□□□ 0.87
SMC4-221ENST00000489573 PHF12Q96QT6 1004 aa20.48■□□□□ 0.87
SMC4-221ENST00000489573 MS4A12Q9NXJ0 267 aa20.48■□□□□ 0.87
SMC4-221ENST00000489573 KCMF1Q9P0J7 381 aa20.48■□□□□ 0.87
SMC4-221ENST00000489573 PDP2Q9P2J9 529 aa20.48■□□□□ 0.87
SMC4-221ENST00000489573 UTS2RQ9UKP6 389 aa20.48■□□□□ 0.87
SMC4-221ENST00000489573 VPS4AQ9UN37 437 aa20.48■□□□□ 0.87
SMC4-221ENST00000489573 AP3M1Q9Y2T2 418 aa20.48■□□□□ 0.87
SMC4-221ENST00000489573 HYKKA2RU49 373 aa20.47■□□□□ 0.87
SMC4-221ENST00000489573 TMEM150CB9EJG8 249 aa20.47■□□□□ 0.87
SMC4-221ENST00000489573 DNAJA2O60884 412 aa20.47■□□□□ 0.87
SMC4-221ENST00000489573 MSL3P1P0C860 447 aa20.47■□□□□ 0.87
SMC4-221ENST00000489573 CKMT2P17540 419 aa20.47■□□□□ 0.87
SMC4-221ENST00000489573 ACTR3P61158 418 aa20.47■□□□□ 0.87
SMC4-221ENST00000489573 SKP1P63208 163 aa20.47■□□□□ 0.87
SMC4-221ENST00000489573 OLR1P78380 273 aa20.47■□□□□ 0.87
SMC4-221ENST00000489573 LIPEQ05469 1076 aa20.47■□□□□ 0.87
SMC4-221ENST00000489573 GRM7Q14831 915 aa20.47■□□□□ 0.87
SMC4-221ENST00000489573 GPR19Q15760 415 aa20.47■□□□□ 0.87
SMC4-221ENST00000489573 NIPAL1Q6NVV3 410 aa20.47■□□□□ 0.87
SMC4-221ENST00000489573 SLC48A1Q6P1K1 146 aa20.47■□□□□ 0.87
SMC4-221ENST00000489573 ZNF621Q6ZSS3 439 aa20.47■□□□□ 0.87
SMC4-221ENST00000489573 ASB9Q96DX5 294 aa20.47■□□□□ 0.87
SMC4-221ENST00000489573 PRRX2Q99811 253 aa20.47■□□□□ 0.87
SMC4-221ENST00000489573 THUMPD3Q9BV44 507 aaKnown RBP20.47■□□□□ 0.87
SMC4-221ENST00000489573 NPLQ9BXD5 320 aaPredicted RBP20.47■□□□□ 0.87
SMC4-221ENST00000489573 SPRTNQ9H040 489 aaPredicted RBP20.47■□□□□ 0.87
SMC4-221ENST00000489573 ALG2Q9H553 416 aa20.47■□□□□ 0.87
SMC4-221ENST00000489573 ENAMQ9NRM1 1142 aa20.47■□□□□ 0.87
SMC4-221ENST00000489573 ZNF282Q9UDV7 671 aaPredicted RBP20.47■□□□□ 0.87
SMC4-221ENST00000489573 ERVK-11Q9UQG0 969 aa20.47■□□□□ 0.87
SMC4-221ENST00000489573 GLOD5A6NK44 160 aa20.46■□□□□ 0.87
SMC4-221ENST00000489573 MSX2P35548 267 aaPredicted RBP20.46■□□□□ 0.87
SMC4-221ENST00000489573 FRKP42685 505 aaPredicted RBP20.46■□□□□ 0.87
SMC4-221ENST00000489573 GSK3BP49841 420 aa20.46■□□□□ 0.87
SMC4-221ENST00000489573 EMP3P54852 163 aa20.46■□□□□ 0.87
SMC4-221ENST00000489573 HBA1P69905 142 aa20.46■□□□□ 0.87
SMC4-221ENST00000489573 TCF15Q12870 199 aa20.46■□□□□ 0.87
SMC4-221ENST00000489573 FAM53BQ14153 422 aa20.46■□□□□ 0.87
SMC4-221ENST00000489573 RHBDD1Q8TEB9 315 aa20.46■□□□□ 0.87
SMC4-221ENST00000489573 ZBED6CLQ96FA7 236 aaPredicted RBP20.46■□□□□ 0.87
SMC4-221ENST00000489573 AURKBQ96GD4 344 aaPredicted RBP20.46■□□□□ 0.87
SMC4-221ENST00000489573 SLAMF7Q9NQ25 335 aa20.46■□□□□ 0.87
SMC4-221ENST00000489573 SLC35C2Q9NQQ7 365 aa20.46■□□□□ 0.87
SMC4-221ENST00000489573 GMPR2Q9P2T1 348 aaKnown RBP20.46■□□□□ 0.87
SMC4-221ENST00000489573 SPACA6W5XKT8 324 aa20.46■□□□□ 0.87
SMC4-221ENST00000489573 RP1P56715 2156 aa20.46■□□□□ 0.87
SMC4-221ENST00000489573 ASXL3Q9C0F0 2248 aa20.46■□□□□ 0.87
SMC4-221ENST00000489573 IGHV5-10-1A0A0J9YXX1 117 aa20.46■□□□□ 0.87
SMC4-221ENST00000489573 SGK494L7N484 410 aa20.46■□□□□ 0.87
SMC4-221ENST00000489573 PGRMC2O15173 223 aa20.46■□□□□ 0.87
SMC4-221ENST00000489573 DNAJB6O75190 326 aa20.46■□□□□ 0.87
SMC4-221ENST00000489573 ENTPD5O75356 428 aa20.46■□□□□ 0.87
SMC4-221ENST00000489573 OR2B3O76000 313 aa20.46■□□□□ 0.87
SMC4-221ENST00000489573 MED26O95402 600 aa20.46■□□□□ 0.87
SMC4-221ENST00000489573 ABCB1P08183 1280 aaPredicted RBP20.46■□□□□ 0.87
SMC4-221ENST00000489573 FOLR1P15328 257 aa20.46■□□□□ 0.87
SMC4-221ENST00000489573 NTSP30990 170 aa20.46■□□□□ 0.87
SMC4-221ENST00000489573 TLX1P31314 330 aaPredicted RBP20.46■□□□□ 0.87
SMC4-221ENST00000489573 PCBP4P57723 403 aaKnown RBP20.46■□□□□ 0.87
SMC4-221ENST00000489573 SLC14A1Q13336 389 aa20.46■□□□□ 0.87
SMC4-221ENST00000489573 RIPK1Q13546 671 aa20.46■□□□□ 0.87
SMC4-221ENST00000489573 FLOT2Q14254 428 aa20.46■□□□□ 0.87
SMC4-221ENST00000489573 TRIM25Q14258 630 aaKnown RBP20.46■□□□□ 0.87
SMC4-221ENST00000489573 FAM180BQ6P0A1 224 aa20.46■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms