RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 ALDH9A1P49189 494 aa17.12■□□□□ 0.33
VIM-206ENST00000487938 HMGA2P52926 109 aa17.12■□□□□ 0.33
VIM-206ENST00000487938 LIM2P55344 173 aa17.12■□□□□ 0.33
VIM-206ENST00000487938 ST8SIA6P61647 398 aa17.12■□□□□ 0.33
VIM-206ENST00000487938 TAGAPQ8N103 731 aa17.12■□□□□ 0.33
VIM-206ENST00000487938 ST13P5Q8NFI4 369 aaPredicted RBP17.12■□□□□ 0.33
VIM-206ENST00000487938 ARRDC3Q96B67 414 aa17.12■□□□□ 0.33
VIM-206ENST00000487938 ITM2CQ9NQX7 267 aa17.12■□□□□ 0.33
VIM-206ENST00000487938 TMEM221A6NGB7 291 aa17.11■□□□□ 0.33
VIM-206ENST00000487938 ANKDD1BA6NHY2 528 aa17.11■□□□□ 0.33
VIM-206ENST00000487938 IFNW1P05000 195 aa17.11■□□□□ 0.33
VIM-206ENST00000487938 BCHEP06276 602 aa17.11■□□□□ 0.33
VIM-206ENST00000487938 RHCEP18577 417 aa17.11■□□□□ 0.33
VIM-206ENST00000487938 UQCRC2P22695 453 aa17.11■□□□□ 0.33
VIM-206ENST00000487938 GTF2E2P29084 291 aaKnown RBP17.11■□□□□ 0.33
VIM-206ENST00000487938 PIK3CBP42338 1070 aa17.11■□□□□ 0.33
VIM-206ENST00000487938 EPHA5P54756 1037 aa17.11■□□□□ 0.33
VIM-206ENST00000487938 CDC42P60953 191 aa17.11■□□□□ 0.33
VIM-206ENST00000487938 TP53BP2Q13625 1128 aa17.11■□□□□ 0.33
VIM-206ENST00000487938 CARTPTQ16568 116 aa17.11■□□□□ 0.33
VIM-206ENST00000487938 PRAMEF14Q5SWL7 426 aa17.11■□□□□ 0.33
VIM-206ENST00000487938 TPRG1LQ5T0D9 272 aa17.11■□□□□ 0.33
VIM-206ENST00000487938 PRAMEF13Q5VWM6 474 aa17.11■□□□□ 0.33
VIM-206ENST00000487938 GRASPQ7Z6J2 395 aaPredicted RBP17.11■□□□□ 0.33
VIM-206ENST00000487938 HORMAD2Q8N7B1 307 aa17.11■□□□□ 0.33
VIM-206ENST00000487938 AMER2Q8N7J2 671 aa17.11■□□□□ 0.33
VIM-206ENST00000487938 RAB8BQ92930 207 aa17.11■□□□□ 0.33
VIM-206ENST00000487938 NXPE3Q969Y0 559 aa17.11■□□□□ 0.33
VIM-206ENST00000487938 IL4I1Q96RQ9 567 aa17.11■□□□□ 0.33
VIM-206ENST00000487938 RSPO3Q9BXY4 272 aaPredicted RBP17.11■□□□□ 0.33
VIM-206ENST00000487938 ANKHQ9HCJ1 492 aa17.11■□□□□ 0.33
VIM-206ENST00000487938 SLAMF7Q9NQ25 335 aa17.11■□□□□ 0.33
VIM-206ENST00000487938 PCDHGA3Q9Y5H0 932 aa17.11■□□□□ 0.33
VIM-206ENST00000487938 C5orf42Q9H799 3197 aa17.11■□□□□ 0.33
VIM-206ENST00000487938 LRRK1Q38SD2 2015 aa17.11■□□□□ 0.33
VIM-206ENST00000487938 NOTCH4Q99466 2003 aa17.11■□□□□ 0.33
VIM-206ENST00000487938 TRBV4-1A0A0J9YWV2 114 aa17.1■□□□□ 0.33
VIM-206ENST00000487938 ZW10O43264 779 aa17.1■□□□□ 0.33
VIM-206ENST00000487938 EFCAB14O75071 495 aa17.1■□□□□ 0.33
VIM-206ENST00000487938 CNOT3O75175 753 aaKnown RBP17.1■□□□□ 0.33
VIM-206ENST00000487938 PAPLNO95428 1278 aa17.1■□□□□ 0.33
VIM-206ENST00000487938 IGFBP1P08833 259 aaPredicted RBP17.1■□□□□ 0.33
VIM-206ENST00000487938 ACADLP28330 430 aa17.1■□□□□ 0.33
VIM-206ENST00000487938 CRISP1P54107 249 aa17.1■□□□□ 0.33
VIM-206ENST00000487938 DOC2BQ14184 412 aa17.1■□□□□ 0.33
VIM-206ENST00000487938 IRF3Q14653 427 aa17.1■□□□□ 0.33
VIM-206ENST00000487938 FRMPD2BQ6IN97 320 aa17.1■□□□□ 0.33
VIM-206ENST00000487938 REEP3Q6NUK4 255 aa17.1■□□□□ 0.33
VIM-206ENST00000487938 SLC9B2Q86UD5 537 aa17.1■□□□□ 0.33
VIM-206ENST00000487938 HCAR2Q8TDS4 363 aa17.1■□□□□ 0.33
VIM-206ENST00000487938 SLC38A5Q8WUX1 472 aa17.1■□□□□ 0.33
VIM-206ENST00000487938 ITPKCQ96DU7 683 aa17.1■□□□□ 0.33
VIM-206ENST00000487938 MTERF3Q96E29 417 aa17.1■□□□□ 0.33
VIM-206ENST00000487938 F2RL3Q96RI0 385 aa17.1■□□□□ 0.33
VIM-206ENST00000487938 ZCCHC2Q9C0B9 1178 aaKnown RBP17.1■□□□□ 0.33
VIM-206ENST00000487938 LTBP2Q14767 1821 aa17.1■□□□□ 0.33
VIM-206ENST00000487938 MTCL1Q9Y4B5 1905 aaKnown RBP17.1■□□□□ 0.33
VIM-206ENST00000487938 PSMD11O00231 422 aa17.1■□□□□ 0.33
VIM-206ENST00000487938 PLPP1O14494 284 aa17.1■□□□□ 0.33
VIM-206ENST00000487938 PI15O43692 258 aa17.1■□□□□ 0.33
VIM-206ENST00000487938 SH3BP5O60239 455 aa17.1■□□□□ 0.33
VIM-206ENST00000487938 C6P13671 934 aa17.1■□□□□ 0.33
VIM-206ENST00000487938 MANFP55145 182 aaKnown RBP17.1■□□□□ 0.33
VIM-206ENST00000487938 FBXO43Q4G163 708 aa17.1■□□□□ 0.33
VIM-206ENST00000487938 STEAP3Q658P3 488 aa17.1■□□□□ 0.33
VIM-206ENST00000487938 ADGRF3Q8IZF5 1079 aa17.1■□□□□ 0.33
VIM-206ENST00000487938 C11orf16Q9NQ32 467 aa17.1■□□□□ 0.33
VIM-206ENST00000487938 MARK1Q9P0L2 795 aa17.1■□□□□ 0.33
VIM-206ENST00000487938 FTSJ1Q9UET6 329 aa17.1■□□□□ 0.33
VIM-206ENST00000487938 A8MVJ9 347 aa17.09■□□□□ 0.33
VIM-206ENST00000487938 C5orf58C9J3I9 102 aa17.09■□□□□ 0.33
VIM-206ENST00000487938 PRRT4C9JH25 899 aa17.09■□□□□ 0.33
VIM-206ENST00000487938 TBX6O95947 436 aaPredicted RBP17.09■□□□□ 0.33
VIM-206ENST00000487938 TIMP1P01033 207 aa17.09■□□□□ 0.33
VIM-206ENST00000487938 FEN1P39748 380 aaKnown RBP17.09■□□□□ 0.33
VIM-206ENST00000487938 TSTQ16762 297 aaKnown RBP17.09■□□□□ 0.33
VIM-206ENST00000487938 PARP16Q8N5Y8 322 aa17.09■□□□□ 0.33
VIM-206ENST00000487938 POC5Q8NA72 575 aa17.09■□□□□ 0.33
VIM-206ENST00000487938 CRELD1Q96HD1 420 aa17.09■□□□□ 0.33
VIM-206ENST00000487938 MAPKAP1Q9BPZ7 522 aa17.09■□□□□ 0.33
VIM-206ENST00000487938 CAB39Q9Y376 341 aaPredicted RBP17.09■□□□□ 0.33
VIM-206ENST00000487938 FEZF1A0PJY2 475 aa17.09■□□□□ 0.33
VIM-206ENST00000487938 TRIM43BA6NCK2 446 aa17.09■□□□□ 0.33
VIM-206ENST00000487938 ZAR1LA6NP61 321 aa17.09■□□□□ 0.33
VIM-206ENST00000487938 SOX14O95416 240 aa17.09■□□□□ 0.33
VIM-206ENST00000487938 CYP17A1P05093 508 aa17.09■□□□□ 0.33
VIM-206ENST00000487938 SLC6A11P48066 632 aa17.09■□□□□ 0.33
VIM-206ENST00000487938 TMED10P49755 219 aaKnown RBP17.09■□□□□ 0.33
VIM-206ENST00000487938 EIF4HQ15056 248 aaKnown RBP17.09■□□□□ 0.33
VIM-206ENST00000487938 UNC5DQ6UXZ4 953 aa17.09■□□□□ 0.33
VIM-206ENST00000487938 RBM45Q8IUH3 476 aaKnown RBP17.09■□□□□ 0.33
VIM-206ENST00000487938 MRPL43Q8N983 215 aaKnown RBP17.09■□□□□ 0.33
VIM-206ENST00000487938 KBTBD8Q8NFY9 601 aa17.09■□□□□ 0.33
VIM-206ENST00000487938 OR2L2Q8NH16 312 aa17.09■□□□□ 0.33
VIM-206ENST00000487938 SETD7Q8WTS6 366 aaKnown RBP17.09■□□□□ 0.33
VIM-206ENST00000487938 TRIM43Q96BQ3 446 aaPredicted RBP17.09■□□□□ 0.33
VIM-206ENST00000487938 KLHL25Q9H0H3 589 aa17.09■□□□□ 0.33
VIM-206ENST00000487938 CLN6Q9NWW5 311 aa17.09■□□□□ 0.33
VIM-206ENST00000487938 TAC3Q9UHF0 121 aa17.09■□□□□ 0.33
VIM-206ENST00000487938 SNX11Q9Y5W9 270 aa17.09■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms