RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 FER1L5A0AVI2 2057 aa7.57□□□□□ -1.2
USP40-216ENST00000485943 LRRC14BA6NHZ5 514 aa7.57□□□□□ -1.2
USP40-216ENST00000485943 VSTM2BA6NLU5 285 aa7.57□□□□□ -1.2
USP40-216ENST00000485943 H0YIV9 168 aa7.57□□□□□ -1.2
USP40-216ENST00000485943 H3BMH7 237 aa7.57□□□□□ -1.2
USP40-216ENST00000485943 FCHO1O14526 889 aa7.57□□□□□ -1.2
USP40-216ENST00000485943 DLX3O60479 287 aa7.57□□□□□ -1.2
USP40-216ENST00000485943 TRIM13O60858 407 aa7.57□□□□□ -1.2
USP40-216ENST00000485943 KLF7O75840 302 aaPredicted RBP7.57□□□□□ -1.2
USP40-216ENST00000485943 RPS17P08708 135 aaKnown RBP7.57□□□□□ -1.2
USP40-216ENST00000485943 FURINP09958 794 aa7.57□□□□□ -1.2
USP40-216ENST00000485943 MTHFD2P13995 350 aa7.57□□□□□ -1.2
USP40-216ENST00000485943 DDX5P17844 614 aaKnown RBP7.57□□□□□ -1.2
USP40-216ENST00000485943 HIST1H1TP22492 207 aaPredicted RBP7.57□□□□□ -1.2
USP40-216ENST00000485943 PIK3R1P27986 724 aa7.57□□□□□ -1.2
USP40-216ENST00000485943 GCAP28676 217 aa7.57□□□□□ -1.2
USP40-216ENST00000485943 HNRNPH1P31943 449 aaKnown RBP7.57□□□□□ -1.2
USP40-216ENST00000485943 SOX18P35713 384 aa7.57□□□□□ -1.2
USP40-216ENST00000485943 CASP2P42575 452 aa7.57□□□□□ -1.2
USP40-216ENST00000485943 TSFMP43897 325 aaKnown RBP7.57□□□□□ -1.2
USP40-216ENST00000485943 ALDH9A1P49189 494 aa7.57□□□□□ -1.2
USP40-216ENST00000485943 NEK2P51955 445 aa7.57□□□□□ -1.2
USP40-216ENST00000485943 MAPK12P53778 367 aa7.57□□□□□ -1.2
USP40-216ENST00000485943 NAGLUP54802 743 aa7.57□□□□□ -1.2
USP40-216ENST00000485943 PLIN5Q00G26 463 aa7.57□□□□□ -1.2
USP40-216ENST00000485943 OC90Q02509 493 aaPredicted RBP7.57□□□□□ -1.2
USP40-216ENST00000485943 BTKQ06187 659 aa7.57□□□□□ -1.2
USP40-216ENST00000485943 ZNF33BQ06732 778 aa7.57□□□□□ -1.2
USP40-216ENST00000485943 ACSM2AQ08AH3 577 aa7.57□□□□□ -1.2
USP40-216ENST00000485943 SERTAD2Q14140 314 aa7.57□□□□□ -1.2
USP40-216ENST00000485943 MYBPC3Q14896 1274 aa7.57□□□□□ -1.2
USP40-216ENST00000485943 SFT2D3Q587I9 215 aa7.57□□□□□ -1.2
USP40-216ENST00000485943 ZNF678Q5SXM1 525 aa7.57□□□□□ -1.2
USP40-216ENST00000485943 ACSM2BQ68CK6 577 aa7.57□□□□□ -1.2
USP40-216ENST00000485943 TCTN3Q6NUS6 607 aa7.57□□□□□ -1.2
USP40-216ENST00000485943 PAPD4Q6PIY7 484 aaKnown RBP7.57□□□□□ -1.2
USP40-216ENST00000485943 ATG14Q6ZNE5 492 aa7.57□□□□□ -1.2
USP40-216ENST00000485943 LINC00696Q6ZRV3 163 aa7.57□□□□□ -1.2
USP40-216ENST00000485943 CLNKQ7Z7G1 428 aa7.57□□□□□ -1.2
USP40-216ENST00000485943 NUDCD3Q8IVD9 361 aa7.57□□□□□ -1.2
USP40-216ENST00000485943 ZC3H7AQ8IWR0 971 aaKnown RBP7.57□□□□□ -1.2
USP40-216ENST00000485943 DDIASQ8IXT1 998 aa7.57□□□□□ -1.2
USP40-216ENST00000485943 ZNF595Q8IYB9 648 aa7.57□□□□□ -1.2
USP40-216ENST00000485943 LAS2Q8IYD9 372 aa7.57□□□□□ -1.2
USP40-216ENST00000485943 KIRREL3Q8IZU9 778 aa7.57□□□□□ -1.2
USP40-216ENST00000485943 MREGQ8N565 214 aa7.57□□□□□ -1.2
USP40-216ENST00000485943 SLC5A8Q8N695 610 aa7.57□□□□□ -1.2
USP40-216ENST00000485943 HORMAD2Q8N7B1 307 aa7.57□□□□□ -1.2
USP40-216ENST00000485943 AMER3Q8N944 861 aa7.57□□□□□ -1.2
USP40-216ENST00000485943 ANKRD42Q8N9B4 389 aa7.57□□□□□ -1.2
USP40-216ENST00000485943 FAM98AQ8NCA5 519 aaKnown RBP7.57□□□□□ -1.2
USP40-216ENST00000485943 OR52B6Q8NGF0 335 aa7.57□□□□□ -1.2
USP40-216ENST00000485943 OR5T3Q8NGG3 340 aa7.57□□□□□ -1.2
USP40-216ENST00000485943 CREB3L4Q8TEY5 395 aa7.57□□□□□ -1.2
USP40-216ENST00000485943 ZNF473Q8WTR7 871 aaKnown RBP7.57□□□□□ -1.2
USP40-216ENST00000485943 DYDC1Q8WWB3 177 aa7.57□□□□□ -1.2
USP40-216ENST00000485943 TTC9Q92623 222 aa7.57□□□□□ -1.2
USP40-216ENST00000485943 DAZLQ92904 295 aaKnown RBP7.57□□□□□ -1.2
USP40-216ENST00000485943 RBM18Q96H35 190 aaKnown RBP7.57□□□□□ -1.2
USP40-216ENST00000485943 ART5Q96L15 291 aa7.57□□□□□ -1.2
USP40-216ENST00000485943 NSUN5Q96P11 429 aaKnown RBP7.57□□□□□ -1.2
USP40-216ENST00000485943 DGAT2Q96PD7 388 aa7.57□□□□□ -1.2
USP40-216ENST00000485943 TMEM237Q96Q45 408 aa7.57□□□□□ -1.2
USP40-216ENST00000485943 ZNF382Q96SR6 550 aa7.57□□□□□ -1.2
USP40-216ENST00000485943 NTMT1Q9BV86 223 aa7.57□□□□□ -1.2
USP40-216ENST00000485943 MS4A8Q9BY19 250 aa7.57□□□□□ -1.2
USP40-216ENST00000485943 SLC29A3Q9BZD2 475 aa7.57□□□□□ -1.2
USP40-216ENST00000485943 KLHL31Q9H511 634 aa7.57□□□□□ -1.2
USP40-216ENST00000485943 DMRT3Q9NQL9 472 aa7.57□□□□□ -1.2
USP40-216ENST00000485943 SDAD1Q9NVU7 687 aaKnown RBP eCLIP7.57□□□□□ -1.2
USP40-216ENST00000485943 COPG2Q9UBF2 871 aa7.57□□□□□ -1.2
USP40-216ENST00000485943 ANAPC2Q9UJX6 822 aa7.57□□□□□ -1.2
USP40-216ENST00000485943 RAB21Q9UL25 225 aa7.57□□□□□ -1.2
USP40-216ENST00000485943 HS3ST3B1Q9Y662 390 aa7.57□□□□□ -1.2
USP40-216ENST00000485943 EPG5Q9HCE0 2579 aa7.57□□□□□ -1.2
USP40-216ENST00000485943 WDR91A4D1P6 747 aa7.56□□□□□ -1.2
USP40-216ENST00000485943 MAGEB17A8MXT2 336 aa7.56□□□□□ -1.2
USP40-216ENST00000485943 FOXE1O00358 373 aaPredicted RBP7.56□□□□□ -1.2
USP40-216ENST00000485943 RTCAO00442 366 aaKnown RBP7.56□□□□□ -1.2
USP40-216ENST00000485943 RGS14O43566 566 aa7.56□□□□□ -1.2
USP40-216ENST00000485943 KLK8O60259 260 aa7.56□□□□□ -1.2
USP40-216ENST00000485943 PLIN3O60664 434 aa7.56□□□□□ -1.2
USP40-216ENST00000485943 JRKO75564 520 aa7.56□□□□□ -1.2
USP40-216ENST00000485943 ZWINTO95229 277 aa7.56□□□□□ -1.2
USP40-216ENST00000485943 HSPA4LO95757 839 aa7.56□□□□□ -1.2
USP40-216ENST00000485943 B3GALT4O96024 378 aa7.56□□□□□ -1.2
USP40-216ENST00000485943 PRB1P04280 392 aa7.56□□□□□ -1.2
USP40-216ENST00000485943 KLK1P06870 262 aa7.56□□□□□ -1.2
USP40-216ENST00000485943 CAPN1P07384 714 aa7.56□□□□□ -1.2
USP40-216ENST00000485943 UMODP07911 640 aa7.56□□□□□ -1.2
USP40-216ENST00000485943 NR2F6P10588 404 aa7.56□□□□□ -1.2
USP40-216ENST00000485943 HSD3B1P14060 373 aa7.56□□□□□ -1.2
USP40-216ENST00000485943 ALOX15P16050 662 aaPredicted RBP7.56□□□□□ -1.2
USP40-216ENST00000485943 HSD3B2P26439 372 aa7.56□□□□□ -1.2
USP40-216ENST00000485943 HSD17B7P56937 341 aa7.56□□□□□ -1.2
USP40-216ENST00000485943 FOXL2P58012 376 aa7.56□□□□□ -1.2
USP40-216ENST00000485943 HYAL2Q12891 473 aa7.56□□□□□ -1.2
USP40-216ENST00000485943 BIKQ13323 160 aa7.56□□□□□ -1.2
USP40-216ENST00000485943 CUL3Q13618 768 aa7.56□□□□□ -1.2
USP40-216ENST00000485943 SPIN4Q56A73 249 aa7.56□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms