RNA–Protein interactions for RNA: ENST00000479177.1

USP48-208, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 686 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-208ENST00000479177 ZNF451Q9Y4E5 1061 aa6.33□□□□□ -1.4
USP48-208ENST00000479177 GPR45Q9Y5Y3 372 aa6.33□□□□□ -1.4
USP48-208ENST00000479177 USP34Q70CQ2 3546 aa6.32□□□□□ -1.4
USP48-208ENST00000479177 IGHV5-51A0A0C4DH38 117 aa6.32□□□□□ -1.4
USP48-208ENST00000479177 A0A0J9YVX5 310 aa6.32□□□□□ -1.4
USP48-208ENST00000479177 CPED1A4D0V7 1026 aa6.32□□□□□ -1.4
USP48-208ENST00000479177 ERICH4A6NGS2 130 aa6.32□□□□□ -1.4
USP48-208ENST00000479177 SLC9B1P1A6NJY1 282 aa6.32□□□□□ -1.4
USP48-208ENST00000479177 C4orf51C9J302 202 aa6.32□□□□□ -1.4
USP48-208ENST00000479177 PSMD12O00232 456 aaPredicted RBP6.32□□□□□ -1.4
USP48-208ENST00000479177 PLPP1O14494 284 aa6.32□□□□□ -1.4
USP48-208ENST00000479177 PRRG2O14669 202 aa6.32□□□□□ -1.4
USP48-208ENST00000479177 ANKRD28O15084 1053 aa6.32□□□□□ -1.4
USP48-208ENST00000479177 CASC3O15234 703 aaKnown RBP6.32□□□□□ -1.4
USP48-208ENST00000479177 SH3BP5O60239 455 aa6.32□□□□□ -1.4
USP48-208ENST00000479177 SH3BGRLO75368 114 aa6.32□□□□□ -1.4
USP48-208ENST00000479177 SEC22BO75396 215 aa6.32□□□□□ -1.4
USP48-208ENST00000479177 CBX6O95503 412 aa6.32□□□□□ -1.4
USP48-208ENST00000479177 STATHP02808 62 aa6.32□□□□□ -1.4
USP48-208ENST00000479177 RPLP0P05388 317 aaKnown RBP6.32□□□□□ -1.4
USP48-208ENST00000479177 G6PDP11413 515 aa6.32□□□□□ -1.4
USP48-208ENST00000479177 BCKDHAP12694 445 aa6.32□□□□□ -1.4
USP48-208ENST00000479177 CD59P13987 128 aa6.32□□□□□ -1.4
USP48-208ENST00000479177 SDC1P18827 310 aa6.32□□□□□ -1.4
USP48-208ENST00000479177 GPX3P22352 226 aa6.32□□□□□ -1.4
USP48-208ENST00000479177 PTX3P26022 381 aaPredicted RBP6.32□□□□□ -1.4
USP48-208ENST00000479177 PRDX6P30041 224 aa6.32□□□□□ -1.4
USP48-208ENST00000479177 ADSLP30566 484 aaPredicted RBP6.32□□□□□ -1.4
USP48-208ENST00000479177 TIA1P31483 386 aaKnown RBP eCLIP6.32□□□□□ -1.4
USP48-208ENST00000479177 HNRNPH1P31943 449 aaKnown RBP6.32□□□□□ -1.4
USP48-208ENST00000479177 GABRA4P48169 554 aa6.32□□□□□ -1.4
USP48-208ENST00000479177 PPM1FP49593 454 aaPredicted RBP6.32□□□□□ -1.4
USP48-208ENST00000479177 ACADVLP49748 655 aa6.32□□□□□ -1.4
USP48-208ENST00000479177 DUSP3P51452 185 aaPredicted RBP6.32□□□□□ -1.4
USP48-208ENST00000479177 RAE1P78406 368 aaKnown RBP6.32□□□□□ -1.4
USP48-208ENST00000479177 CCL7P80098 99 aa6.32□□□□□ -1.4
USP48-208ENST00000479177 ACSM2AQ08AH3 577 aa6.32□□□□□ -1.4
USP48-208ENST00000479177 SLC14A1Q13336 389 aa6.32□□□□□ -1.4
USP48-208ENST00000479177 SQSTM1Q13501 440 aa6.32□□□□□ -1.4
USP48-208ENST00000479177 HERC3Q15034 1050 aa6.32□□□□□ -1.4
USP48-208ENST00000479177 CSRP2Q16527 193 aa6.32□□□□□ -1.4
USP48-208ENST00000479177 KCNMB1Q16558 191 aa6.32□□□□□ -1.4
USP48-208ENST00000479177 DEFB110Q30KQ9 67 aa6.32□□□□□ -1.4
USP48-208ENST00000479177 TMEM35AQ53FP2 167 aa6.32□□□□□ -1.4
USP48-208ENST00000479177 SPIN4Q56A73 249 aa6.32□□□□□ -1.4
USP48-208ENST00000479177 TOR1AIP1Q5JTV8 583 aa6.32□□□□□ -1.4
USP48-208ENST00000479177 DEPDC1Q5TB30 811 aa6.32□□□□□ -1.4
USP48-208ENST00000479177 IL23RQ5VWK5 629 aa6.32□□□□□ -1.4
USP48-208ENST00000479177 KHDRBS2Q5VWX1 349 aaKnown RBP6.32□□□□□ -1.4
USP48-208ENST00000479177 ACSM2BQ68CK6 577 aa6.32□□□□□ -1.4
USP48-208ENST00000479177 FRMPD2BQ6IN97 320 aa6.32□□□□□ -1.4
USP48-208ENST00000479177 NOXRED1Q6NXP6 359 aa6.32□□□□□ -1.4
USP48-208ENST00000479177 FBXO42Q6P3S6 717 aa6.32□□□□□ -1.4
USP48-208ENST00000479177 GALNT18Q6P9A2 607 aa6.32□□□□□ -1.4
USP48-208ENST00000479177 WDR74Q6RFH5 385 aaPredicted RBP6.32□□□□□ -1.4
USP48-208ENST00000479177 CYP20A1Q6UW02 462 aa6.32□□□□□ -1.4
USP48-208ENST00000479177 CCDC121Q6ZUS5 278 aa6.32□□□□□ -1.4
USP48-208ENST00000479177 ASPGQ86U10 573 aa6.32□□□□□ -1.4
USP48-208ENST00000479177 PLXDC1Q8IUK5 500 aa6.32□□□□□ -1.4
USP48-208ENST00000479177 MIER2Q8N344 545 aa6.32□□□□□ -1.4
USP48-208ENST00000479177 LIX1Q8N485 282 aa6.32□□□□□ -1.4
USP48-208ENST00000479177 DNAJC22Q8N4W6 341 aa6.32□□□□□ -1.4
USP48-208ENST00000479177 C1orf52Q8N6N3 182 aaKnown RBP6.32□□□□□ -1.4
USP48-208ENST00000479177 TRPV3Q8NET8 790 aa6.32□□□□□ -1.4
USP48-208ENST00000479177 OR9I1Q8NGQ6 314 aa6.32□□□□□ -1.4
USP48-208ENST00000479177 IFI44Q8TCB0 444 aa6.32□□□□□ -1.4
USP48-208ENST00000479177 NT5CQ8TCD5 201 aa6.32□□□□□ -1.4
USP48-208ENST00000479177 CHTF18Q8WVB6 975 aa6.32□□□□□ -1.4
USP48-208ENST00000479177 NCSTNQ92542 709 aa6.32□□□□□ -1.4
USP48-208ENST00000479177 TM4SF19Q96DZ7 209 aa6.32□□□□□ -1.4
USP48-208ENST00000479177 ZDHHC12Q96GR4 267 aa6.32□□□□□ -1.4
USP48-208ENST00000479177 KIRREL1Q96J84 757 aa6.32□□□□□ -1.4
USP48-208ENST00000479177 CNDP2Q96KP4 475 aaKnown RBP6.32□□□□□ -1.4
USP48-208ENST00000479177 ZNF285Q96NJ3 590 aa6.32□□□□□ -1.4
USP48-208ENST00000479177 F2RL3Q96RI0 385 aa6.32□□□□□ -1.4
USP48-208ENST00000479177 CCDC3Q9BQI4 270 aa6.32□□□□□ -1.4
USP48-208ENST00000479177 NUDT22Q9BRQ3 303 aa6.32□□□□□ -1.4
USP48-208ENST00000479177 EBPLQ9BY08 206 aa6.32□□□□□ -1.4
USP48-208ENST00000479177 CHRNA10Q9GZZ6 450 aa6.32□□□□□ -1.4
USP48-208ENST00000479177 IRF2BPLQ9H1B7 796 aa6.32□□□□□ -1.4
USP48-208ENST00000479177 KCNH6Q9H252 994 aa6.32□□□□□ -1.4
USP48-208ENST00000479177 ACTL8Q9H568 366 aa6.32□□□□□ -1.4
USP48-208ENST00000479177 GP6Q9HCN6 339 aa6.32□□□□□ -1.4
USP48-208ENST00000479177 FAM60AQ9NP50 221 aa6.32□□□□□ -1.4
USP48-208ENST00000479177 TMEM9BQ9NQ34 198 aa6.32□□□□□ -1.4
USP48-208ENST00000479177 LHX9Q9NQ69 397 aa6.32□□□□□ -1.4
USP48-208ENST00000479177 RXFP3Q9NSD7 469 aa6.32□□□□□ -1.4
USP48-208ENST00000479177 SEMA4GQ9NTN9 838 aa6.32□□□□□ -1.4
USP48-208ENST00000479177 ARL8BQ9NVJ2 186 aa6.32□□□□□ -1.4
USP48-208ENST00000479177 NMRK1Q9NWW6 199 aa6.32□□□□□ -1.4
USP48-208ENST00000479177 SIRT5Q9NXA8 310 aa6.32□□□□□ -1.4
USP48-208ENST00000479177 ZIM2Q9NZV7 527 aa6.32□□□□□ -1.4
USP48-208ENST00000479177 SEMA5BQ9P283 1151 aa6.32□□□□□ -1.4
USP48-208ENST00000479177 NCDNQ9UBB6 729 aa6.32□□□□□ -1.4
USP48-208ENST00000479177 FTSJ1Q9UET6 329 aa6.32□□□□□ -1.4
USP48-208ENST00000479177 EIF3LQ9Y262 564 aaKnown RBP6.32□□□□□ -1.4
USP48-208ENST00000479177 RUVBL1Q9Y265 456 aaKnown RBP6.32□□□□□ -1.4
USP48-208ENST00000479177 PCNX2A6NKB5 2137 aa6.32□□□□□ -1.4
USP48-208ENST00000479177 LOC105369274A0A096LPK9 316 aa6.31□□□□□ -1.4
USP48-208ENST00000479177 LOC102723532A0A0G2JNH3 316 aa6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms