RNA–Protein interactions for RNA: ENST00000475251.1

SKA3-206, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 397 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-206ENST00000475251 A0A1W2PPB8 328 aa11.65□□□□□ -0.54
SKA3-206ENST00000475251 A0A1W2PRS3 328 aa11.65□□□□□ -0.54
SKA3-206ENST00000475251 KIR3DP1A8MWS1 328 aa11.65□□□□□ -0.54
SKA3-206ENST00000475251 G3V3Y1 287 aa11.65□□□□□ -0.54
SKA3-206ENST00000475251 ERI3O43414 337 aaKnown RBP11.65□□□□□ -0.54
SKA3-206ENST00000475251 NRDCO43847 1150 aa11.65□□□□□ -0.54
SKA3-206ENST00000475251 H2AFYO75367 372 aaKnown RBP11.65□□□□□ -0.54
SKA3-206ENST00000475251 KRT14P02533 472 aa11.65□□□□□ -0.54
SKA3-206ENST00000475251 PPP2R1BP30154 601 aa11.65□□□□□ -0.54
SKA3-206ENST00000475251 DNASE1L1P49184 302 aa11.65□□□□□ -0.54
SKA3-206ENST00000475251 STX4Q12846 297 aa11.65□□□□□ -0.54
SKA3-206ENST00000475251 SNTB1Q13884 538 aaKnown RBP11.65□□□□□ -0.54
SKA3-206ENST00000475251 SERTAD2Q14140 314 aa11.65□□□□□ -0.54
SKA3-206ENST00000475251 SF3B4Q15427 424 aaKnown RBP eCLIP11.65□□□□□ -0.54
SKA3-206ENST00000475251 FBXL19-AS1Q494R0 122 aa11.65□□□□□ -0.54
SKA3-206ENST00000475251 ANKRD22Q5VYY1 191 aa11.65□□□□□ -0.54
SKA3-206ENST00000475251 C16orf47Q6ZP98 133 aaPredicted RBP11.65□□□□□ -0.54
SKA3-206ENST00000475251 MAATS1Q7Z4T9 603 aa11.65□□□□□ -0.54
SKA3-206ENST00000475251 THOC6Q86W42 341 aaKnown RBP11.65□□□□□ -0.54
SKA3-206ENST00000475251 KIF18BQ86Y91 864 aa11.65□□□□□ -0.54
SKA3-206ENST00000475251 TMEM139Q8IV31 216 aa11.65□□□□□ -0.54
SKA3-206ENST00000475251 LIX1Q8N485 282 aa11.65□□□□□ -0.54
SKA3-206ENST00000475251 SLCO2A1Q92959 643 aa11.65□□□□□ -0.54
SKA3-206ENST00000475251 COPS7BQ9H9Q2 264 aaPredicted RBP11.65□□□□□ -0.54
SKA3-206ENST00000475251 NEUROD4Q9HD90 331 aa11.65□□□□□ -0.54
SKA3-206ENST00000475251 COPS7AQ9UBW8 275 aa11.65□□□□□ -0.54
SKA3-206ENST00000475251 CBLCQ9ULV8 474 aa11.65□□□□□ -0.54
SKA3-206ENST00000475251 BOKQ9UMX3 212 aaPredicted RBP11.65□□□□□ -0.54
SKA3-206ENST00000475251 ATG4BQ9Y4P1 393 aa11.65□□□□□ -0.54
SKA3-206ENST00000475251 SEC23IPQ9Y6Y8 1000 aaKnown RBP11.65□□□□□ -0.54
SKA3-206ENST00000475251 TUBAL3A6NHL2 446 aa11.64□□□□□ -0.55
SKA3-206ENST00000475251 GOLGA8MH3BSY2 632 aa11.64□□□□□ -0.55
SKA3-206ENST00000475251 CTNSO60931 367 aa11.64□□□□□ -0.55
SKA3-206ENST00000475251 ATE1O95260 518 aa11.64□□□□□ -0.55
SKA3-206ENST00000475251 TTC4O95801 387 aa11.64□□□□□ -0.55
SKA3-206ENST00000475251 INHBBP09529 407 aa11.64□□□□□ -0.55
SKA3-206ENST00000475251 PGAM1P18669 254 aa11.64□□□□□ -0.55
SKA3-206ENST00000475251 GNAZP19086 355 aa11.64□□□□□ -0.55
SKA3-206ENST00000475251 TNNI3P19429 210 aa11.64□□□□□ -0.55
SKA3-206ENST00000475251 BMP5P22003 454 aa11.64□□□□□ -0.55
SKA3-206ENST00000475251 CDKN2DP55273 166 aa11.64□□□□□ -0.55
SKA3-206ENST00000475251 RNF4P78317 190 aa11.64□□□□□ -0.55
SKA3-206ENST00000475251 TIAL1Q01085 375 aaKnown RBP eCLIP11.64□□□□□ -0.55
SKA3-206ENST00000475251 TGM3Q08188 693 aa11.64□□□□□ -0.55
SKA3-206ENST00000475251 FOXO1Q12778 655 aa11.64□□□□□ -0.55
SKA3-206ENST00000475251 RUNX2Q13950 521 aa11.64□□□□□ -0.55
SKA3-206ENST00000475251 SLC22A10Q63ZE4 541 aa11.64□□□□□ -0.55
SKA3-206ENST00000475251 TRIM40Q6P9F5 258 aa11.64□□□□□ -0.55
SKA3-206ENST00000475251 CLEC9AQ6UXN8 241 aa11.64□□□□□ -0.55
SKA3-206ENST00000475251 TMIGD1Q6UXZ0 262 aa11.64□□□□□ -0.55
SKA3-206ENST00000475251 CLNKQ7Z7G1 428 aa11.64□□□□□ -0.55
SKA3-206ENST00000475251 GALNT7Q86SF2 657 aa11.64□□□□□ -0.55
SKA3-206ENST00000475251 KLHDC8AQ8IYD2 350 aa11.64□□□□□ -0.55
SKA3-206ENST00000475251 ULK2Q8IYT8 1036 aa11.64□□□□□ -0.55
SKA3-206ENST00000475251 DND1Q8IYX4 353 aaKnown RBP11.64□□□□□ -0.55
SKA3-206ENST00000475251 KRT78Q8N1N4 520 aa11.64□□□□□ -0.55
SKA3-206ENST00000475251 ZNF454Q8N9F8 522 aa11.64□□□□□ -0.55
SKA3-206ENST00000475251 FAM47BQ8NA70 645 aa11.64□□□□□ -0.55
SKA3-206ENST00000475251 WFDC11Q8NEX6 87 aa11.64□□□□□ -0.55
SKA3-206ENST00000475251 SLC22A8Q8TCC7 542 aa11.64□□□□□ -0.55
SKA3-206ENST00000475251 CCT6BQ92526 530 aa11.64□□□□□ -0.55
SKA3-206ENST00000475251 KIAA1191Q96A73 305 aa11.64□□□□□ -0.55
SKA3-206ENST00000475251 SERINC2Q96SA4 455 aa11.64□□□□□ -0.55
SKA3-206ENST00000475251 SH3GL2Q99962 352 aa11.64□□□□□ -0.55
SKA3-206ENST00000475251 OR8D2Q9GZM6 311 aa11.64□□□□□ -0.55
SKA3-206ENST00000475251 PITHD1Q9GZP4 211 aaPredicted RBP11.64□□□□□ -0.55
SKA3-206ENST00000475251 QPCTLQ9NXS2 382 aa11.64□□□□□ -0.55
SKA3-206ENST00000475251 TUBA8Q9NY65 449 aaPredicted RBP11.64□□□□□ -0.55
SKA3-206ENST00000475251 ZNF629Q9UEG4 869 aaPredicted RBP11.64□□□□□ -0.55
SKA3-206ENST00000475251 VTI1BQ9UEU0 232 aa11.64□□□□□ -0.55
SKA3-206ENST00000475251 CORO1CQ9ULV4 474 aaPredicted RBP11.64□□□□□ -0.55
SKA3-206ENST00000475251 SLC22A14Q9Y267 594 aa11.64□□□□□ -0.55
SKA3-206ENST00000475251 CLDN16Q9Y5I7 305 aa11.64□□□□□ -0.55
SKA3-206ENST00000475251 LRIT2A6NDA9 550 aa11.63□□□□□ -0.55
SKA3-206ENST00000475251 AHRRA9YTQ3 701 aa11.63□□□□□ -0.55
SKA3-206ENST00000475251 C17orf105B2RV13 164 aa11.63□□□□□ -0.55
SKA3-206ENST00000475251 C4orf51C9J302 202 aa11.63□□□□□ -0.55
SKA3-206ENST00000475251 DYRK3O43781 588 aa11.63□□□□□ -0.55
SKA3-206ENST00000475251 CLEC3AO75596 197 aa11.63□□□□□ -0.55
SKA3-206ENST00000475251 CELA3AP09093 270 aa11.63□□□□□ -0.55
SKA3-206ENST00000475251 CCDC175P0C221 793 aa11.63□□□□□ -0.55
SKA3-206ENST00000475251 CCL3P10147 92 aa11.63□□□□□ -0.55
SKA3-206ENST00000475251 EPXP11678 715 aa11.63□□□□□ -0.55
SKA3-206ENST00000475251 COX7A2P14406 83 aa11.63□□□□□ -0.55
SKA3-206ENST00000475251 TACR1P25103 407 aa11.63□□□□□ -0.55
SKA3-206ENST00000475251 MAGEA3P43357 314 aa11.63□□□□□ -0.55
SKA3-206ENST00000475251 HNMTP50135 292 aa11.63□□□□□ -0.55
SKA3-206ENST00000475251 MTTPP55157 894 aa11.63□□□□□ -0.55
SKA3-206ENST00000475251 KCNJ2P63252 427 aa11.63□□□□□ -0.55
SKA3-206ENST00000475251 MPEG1Q2M385 716 aa11.63□□□□□ -0.55
SKA3-206ENST00000475251 RBM20Q5T481 1227 aaKnown RBP11.63□□□□□ -0.55
SKA3-206ENST00000475251 SHEQ5VZ18 495 aa11.63□□□□□ -0.55
SKA3-206ENST00000475251 LACC1Q8IV20 430 aa11.63□□□□□ -0.55
SKA3-206ENST00000475251 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP11.63□□□□□ -0.55
SKA3-206ENST00000475251 OR2L5Q8NG80 312 aa11.63□□□□□ -0.55
SKA3-206ENST00000475251 RNF166Q96A37 237 aaPredicted RBP11.63□□□□□ -0.55
SKA3-206ENST00000475251 MS4A6EQ96DS6 147 aa11.63□□□□□ -0.55
SKA3-206ENST00000475251 PDLIM5Q96HC4 596 aaKnown RBP11.63□□□□□ -0.55
SKA3-206ENST00000475251 SIGLEC10Q96LC7 697 aa11.63□□□□□ -0.55
SKA3-206ENST00000475251 CNPPD1Q9BV87 410 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms