RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 GPALPP1Q8IXQ4 340 aa15.42■□□□□ 0.06
CCDC28B-204ENST00000469003 EID3Q8N140 333 aa15.42■□□□□ 0.06
CCDC28B-204ENST00000469003 ZFP62Q8NB50 900 aaPredicted RBP15.42■□□□□ 0.06
CCDC28B-204ENST00000469003 C16orf52Q8NHV5 167 aa15.42■□□□□ 0.06
CCDC28B-204ENST00000469003 FBXO25Q8TCJ0 367 aa15.42■□□□□ 0.06
CCDC28B-204ENST00000469003 FBF1Q8TES7 1133 aa15.42■□□□□ 0.06
CCDC28B-204ENST00000469003 AGAP11Q8TF27 550 aa15.42■□□□□ 0.06
CCDC28B-204ENST00000469003 ZNF473Q8WTR7 871 aaKnown RBP15.42■□□□□ 0.06
CCDC28B-204ENST00000469003 PHF10Q8WUB8 498 aaKnown RBP15.42■□□□□ 0.06
CCDC28B-204ENST00000469003 UBTD2Q8WUN7 234 aa15.42■□□□□ 0.06
CCDC28B-204ENST00000469003 DAZLQ92904 295 aaKnown RBP15.42■□□□□ 0.06
CCDC28B-204ENST00000469003 UBE2E3Q969T4 207 aa15.42■□□□□ 0.06
CCDC28B-204ENST00000469003 ATOH8Q96SQ7 321 aa15.42■□□□□ 0.06
CCDC28B-204ENST00000469003 TBCDQ9BTW9 1192 aa15.42■□□□□ 0.06
CCDC28B-204ENST00000469003 ALOXE3Q9BYJ1 711 aa15.42■□□□□ 0.06
CCDC28B-204ENST00000469003 TIMMDC1Q9NPL8 285 aa15.42■□□□□ 0.06
CCDC28B-204ENST00000469003 KCMF1Q9P0J7 381 aa15.42■□□□□ 0.06
CCDC28B-204ENST00000469003 VTI1BQ9UEU0 232 aa15.42■□□□□ 0.06
CCDC28B-204ENST00000469003 CLCA3PQ9Y6N3 262 aa15.42■□□□□ 0.06
CCDC28B-204ENST00000469003 PCNX1Q96RV3 2341 aa15.42■□□□□ 0.06
CCDC28B-204ENST00000469003 TMEM200CA6NKL6 621 aa15.41■□□□□ 0.06
CCDC28B-204ENST00000469003 SUPT3HB4E1H0 165 aa15.41■□□□□ 0.06
CCDC28B-204ENST00000469003 E9PLN8 166 aa15.41■□□□□ 0.06
CCDC28B-204ENST00000469003 PRRG2O14669 202 aa15.41■□□□□ 0.06
CCDC28B-204ENST00000469003 ZNHIT1O43257 154 aa15.41■□□□□ 0.06
CCDC28B-204ENST00000469003 SUPT3HO75486 399 aa15.41■□□□□ 0.06
CCDC28B-204ENST00000469003 LTA4HP09960 611 aaKnown RBP15.41■□□□□ 0.06
CCDC28B-204ENST00000469003 ATP5A1P25705 553 aaKnown RBP15.41■□□□□ 0.06
CCDC28B-204ENST00000469003 SERPINB1P30740 379 aa15.41■□□□□ 0.06
CCDC28B-204ENST00000469003 CASQ1P31415 396 aa15.41■□□□□ 0.06
CCDC28B-204ENST00000469003 PTGER1P34995 402 aa15.41■□□□□ 0.06
CCDC28B-204ENST00000469003 PCDH1Q08174 1060 aa15.41■□□□□ 0.06
CCDC28B-204ENST00000469003 STX4Q12846 297 aa15.41■□□□□ 0.06
CCDC28B-204ENST00000469003 BMPR2Q13873 1038 aa15.41■□□□□ 0.06
CCDC28B-204ENST00000469003 SERTAD2Q14140 314 aa15.41■□□□□ 0.06
CCDC28B-204ENST00000469003 TMEM35AQ53FP2 167 aa15.41■□□□□ 0.06
CCDC28B-204ENST00000469003 MED27Q6P2C8 311 aa15.41■□□□□ 0.06
CCDC28B-204ENST00000469003 ZDHHC24Q6UX98 284 aa15.41■□□□□ 0.06
CCDC28B-204ENST00000469003 ZNF793Q6ZN11 406 aa15.41■□□□□ 0.06
CCDC28B-204ENST00000469003 MDGA2Q7Z553 956 aa15.41■□□□□ 0.06
CCDC28B-204ENST00000469003 FGD2Q7Z6J4 655 aa15.41■□□□□ 0.06
CCDC28B-204ENST00000469003 LAS2Q8IYD9 372 aa15.41■□□□□ 0.06
CCDC28B-204ENST00000469003 MORN4Q8NDC4 146 aa15.41■□□□□ 0.06
CCDC28B-204ENST00000469003 OR14A16Q8NHC5 309 aa15.41■□□□□ 0.06
CCDC28B-204ENST00000469003 PTPMT1Q8WUK0 201 aaPredicted RBP15.41■□□□□ 0.06
CCDC28B-204ENST00000469003 MAPKAP1Q9BPZ7 522 aa15.41■□□□□ 0.06
CCDC28B-204ENST00000469003 VKORC1Q9BQB6 163 aa15.41■□□□□ 0.06
CCDC28B-204ENST00000469003 MYOTQ9UBF9 498 aa15.41■□□□□ 0.06
CCDC28B-204ENST00000469003 ERVK-11Q9UQG0 969 aa15.41■□□□□ 0.06
CCDC28B-204ENST00000469003 ADGRG4Q8IZF6 3080 aa15.4■□□□□ 0.06
CCDC28B-204ENST00000469003 CELSR1Q9NYQ6 3014 aa15.4■□□□□ 0.06
CCDC28B-204ENST00000469003 A8MVJ9 347 aa15.4■□□□□ 0.06
CCDC28B-204ENST00000469003 K7EPI3 171 aa15.4■□□□□ 0.06
CCDC28B-204ENST00000469003 UBXN8O00124 270 aa15.4■□□□□ 0.06
CCDC28B-204ENST00000469003 OR2J2O76002 312 aa15.4■□□□□ 0.06
CCDC28B-204ENST00000469003 SCELO95171 688 aa15.4■□□□□ 0.06
CCDC28B-204ENST00000469003 CLDN14O95500 239 aa15.4■□□□□ 0.06
CCDC28B-204ENST00000469003 TUBB4AP04350 444 aa15.4■□□□□ 0.06
CCDC28B-204ENST00000469003 PCNAP12004 261 aa15.4■□□□□ 0.06
CCDC28B-204ENST00000469003 COX6B1P14854 86 aa15.4■□□□□ 0.06
CCDC28B-204ENST00000469003 RFC3P40938 356 aa15.4■□□□□ 0.06
CCDC28B-204ENST00000469003 GPR85P60893 370 aa15.4■□□□□ 0.06
CCDC28B-204ENST00000469003 HSDL2Q6YN16 418 aa15.4■□□□□ 0.06
CCDC28B-204ENST00000469003 C16orf47Q6ZP98 133 aaPredicted RBP15.4■□□□□ 0.06
CCDC28B-204ENST00000469003 NCCRP1Q6ZVX7 275 aaPredicted RBP15.4■□□□□ 0.06
CCDC28B-204ENST00000469003 CHSY3Q70JA7 882 aa15.4■□□□□ 0.06
CCDC28B-204ENST00000469003 GDF7Q7Z4P5 450 aa15.4■□□□□ 0.06
CCDC28B-204ENST00000469003 ACOT4Q8N9L9 421 aa15.4■□□□□ 0.06
CCDC28B-204ENST00000469003 PSD4Q8NDX1 1056 aa15.4■□□□□ 0.06
CCDC28B-204ENST00000469003 ASB15Q8WXK1 588 aa15.4■□□□□ 0.06
CCDC28B-204ENST00000469003 MTFMTQ96DP5 389 aaKnown RBP15.4■□□□□ 0.06
CCDC28B-204ENST00000469003 CMTM7Q96FZ5 175 aa15.4■□□□□ 0.06
CCDC28B-204ENST00000469003 DMRTA2Q96SC8 542 aa15.4■□□□□ 0.06
CCDC28B-204ENST00000469003 LIN28AQ9H9Z2 209 aaKnown RBP15.4■□□□□ 0.06
CCDC28B-204ENST00000469003 HPF1Q9NWY4 346 aa15.4■□□□□ 0.06
CCDC28B-204ENST00000469003 OPTCQ9UBM4 332 aa15.4■□□□□ 0.06
CCDC28B-204ENST00000469003 SPACA6W5XKT8 324 aa15.4■□□□□ 0.06
CCDC28B-204ENST00000469003 MYOCOSA0A1B0GUC4 107 aa15.39■□□□□ 0.05
CCDC28B-204ENST00000469003 RTCAO00442 366 aaKnown RBP15.39■□□□□ 0.05
CCDC28B-204ENST00000469003 ADAM10O14672 748 aa15.39■□□□□ 0.05
CCDC28B-204ENST00000469003 HS6ST1O60243 411 aa15.39■□□□□ 0.05
CCDC28B-204ENST00000469003 LDB3O75112 727 aa15.39■□□□□ 0.05
CCDC28B-204ENST00000469003 TGFB1P01137 390 aa15.39■□□□□ 0.05
CCDC28B-204ENST00000469003 HIST1H1TP22492 207 aaPredicted RBP15.39■□□□□ 0.05
CCDC28B-204ENST00000469003 PTGS2P35354 604 aa15.39■□□□□ 0.05
CCDC28B-204ENST00000469003 ETF1P62495 437 aaKnown RBP15.39■□□□□ 0.05
CCDC28B-204ENST00000469003 GUCY2DQ02846 1103 aa15.39■□□□□ 0.05
CCDC28B-204ENST00000469003 CDSNQ15517 529 aa15.39■□□□□ 0.05
CCDC28B-204ENST00000469003 TRADDQ15628 312 aa15.39■□□□□ 0.05
CCDC28B-204ENST00000469003 AP5B1Q2VPB7 878 aa15.39■□□□□ 0.05
CCDC28B-204ENST00000469003 CMPK2Q5EBM0 449 aa15.39■□□□□ 0.05
CCDC28B-204ENST00000469003 GRHL2Q6ISB3 625 aa15.39■□□□□ 0.05
CCDC28B-204ENST00000469003 ZNF572Q7Z3I7 529 aaPredicted RBP15.39■□□□□ 0.05
CCDC28B-204ENST00000469003 CCDC91Q7Z6B0 441 aa15.39■□□□□ 0.05
CCDC28B-204ENST00000469003 C7orf57Q8NEG2 295 aa15.39■□□□□ 0.05
CCDC28B-204ENST00000469003 OR7G3Q8NG95 312 aa15.39■□□□□ 0.05
CCDC28B-204ENST00000469003 OR8K3Q8NH51 312 aa15.39■□□□□ 0.05
CCDC28B-204ENST00000469003 FAM57AQ8TBR7 257 aa15.39■□□□□ 0.05
CCDC28B-204ENST00000469003 NXNL1Q96CM4 212 aa15.39■□□□□ 0.05
CCDC28B-204ENST00000469003 RASL10BQ96S79 203 aa15.39■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms