RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 CDK15Q96Q40 435 aa11.21□□□□□ -0.61
SQSTM1-206ENST00000466342 ENKD1Q9H0I2 346 aa11.21□□□□□ -0.61
SQSTM1-206ENST00000466342 GSX1Q9H4S2 264 aaPredicted RBP11.21□□□□□ -0.61
SQSTM1-206ENST00000466342 GSTO2Q9H4Y5 243 aa11.21□□□□□ -0.61
SQSTM1-206ENST00000466342 SOX17Q9H6I2 414 aaPredicted RBP11.21□□□□□ -0.61
SQSTM1-206ENST00000466342 VIPAS39Q9H9C1 493 aa11.21□□□□□ -0.61
SQSTM1-206ENST00000466342 OXSMQ9NWU1 459 aa11.21□□□□□ -0.61
SQSTM1-206ENST00000466342 CTSFQ9UBX1 484 aa11.21□□□□□ -0.61
SQSTM1-206ENST00000466342 STK38LQ9Y2H1 464 aa11.21□□□□□ -0.61
SQSTM1-206ENST00000466342 RNF11Q9Y3C5 154 aa11.21□□□□□ -0.61
SQSTM1-206ENST00000466342 TSC22D4Q9Y3Q8 395 aa11.21□□□□□ -0.61
SQSTM1-206ENST00000466342 PCDHGA11Q9Y5H2 935 aa11.21□□□□□ -0.61
SQSTM1-206ENST00000466342 HS3ST3B1Q9Y662 390 aa11.21□□□□□ -0.61
SQSTM1-206ENST00000466342 SLC22A7Q9Y694 548 aa11.21□□□□□ -0.61
SQSTM1-206ENST00000466342 SCN2AQ99250 2005 aa11.2□□□□□ -0.62
SQSTM1-206ENST00000466342 A0A0A6YYC8 382 aaPredicted RBP11.2□□□□□ -0.62
SQSTM1-206ENST00000466342 LRIT2A6NDA9 550 aa11.2□□□□□ -0.62
SQSTM1-206ENST00000466342 H0YIG0 161 aa11.2□□□□□ -0.62
SQSTM1-206ENST00000466342 I3L1I5 382 aaPredicted RBP11.2□□□□□ -0.62
SQSTM1-206ENST00000466342 TM9SF1O15321 606 aa11.2□□□□□ -0.62
SQSTM1-206ENST00000466342 NSA2O95478 260 aaKnown RBP11.2□□□□□ -0.62
SQSTM1-206ENST00000466342 MLYCDO95822 493 aa11.2□□□□□ -0.62
SQSTM1-206ENST00000466342 PCNAP12004 261 aa11.2□□□□□ -0.62
SQSTM1-206ENST00000466342 IL1RNP18510 177 aa11.2□□□□□ -0.62
SQSTM1-206ENST00000466342 TSPAN8P19075 237 aa11.2□□□□□ -0.62
SQSTM1-206ENST00000466342 KLK2P20151 261 aa11.2□□□□□ -0.62
SQSTM1-206ENST00000466342 FBLP22087 321 aaKnown RBP11.2□□□□□ -0.62
SQSTM1-206ENST00000466342 HPDP32754 393 aaPredicted RBP11.2□□□□□ -0.62
SQSTM1-206ENST00000466342 ETV4P43268 484 aa11.2□□□□□ -0.62
SQSTM1-206ENST00000466342 AVPR1BP47901 424 aa11.2□□□□□ -0.62
SQSTM1-206ENST00000466342 NAGLUP54802 743 aa11.2□□□□□ -0.62
SQSTM1-206ENST00000466342 STXBP1P61764 594 aaKnown RBP11.2□□□□□ -0.62
SQSTM1-206ENST00000466342 KLC1Q07866 573 aa11.2□□□□□ -0.62
SQSTM1-206ENST00000466342 LCP2Q13094 533 aa11.2□□□□□ -0.62
SQSTM1-206ENST00000466342 DSG2Q14126 1118 aa11.2□□□□□ -0.62
SQSTM1-206ENST00000466342 HERC3Q15034 1050 aa11.2□□□□□ -0.62
SQSTM1-206ENST00000466342 CPSF6Q16630 551 aaKnown RBP eCLIP11.2□□□□□ -0.62
SQSTM1-206ENST00000466342 TUBB8Q3ZCM7 444 aa11.2□□□□□ -0.62
SQSTM1-206ENST00000466342 TOR1AIP1Q5JTV8 583 aa11.2□□□□□ -0.62
SQSTM1-206ENST00000466342 LETMD1Q6P1Q0 360 aa11.2□□□□□ -0.62
SQSTM1-206ENST00000466342 SHISA6Q6ZSJ9 500 aa11.2□□□□□ -0.62
SQSTM1-206ENST00000466342 FRMD7Q6ZUT3 714 aa11.2□□□□□ -0.62
SQSTM1-206ENST00000466342 ABHD13Q7L211 337 aa11.2□□□□□ -0.62
SQSTM1-206ENST00000466342 PRSS41Q7RTY9 318 aa11.2□□□□□ -0.62
SQSTM1-206ENST00000466342 MILR1Q7Z6M3 343 aa11.2□□□□□ -0.62
SQSTM1-206ENST00000466342 C10orf107Q8IVU9 208 aa11.2□□□□□ -0.62
SQSTM1-206ENST00000466342 AFAP1L2Q8N4X5 818 aa11.2□□□□□ -0.62
SQSTM1-206ENST00000466342 CCNYL1Q8N7R7 359 aa11.2□□□□□ -0.62
SQSTM1-206ENST00000466342 CHDHQ8NE62 594 aaPredicted RBP11.2□□□□□ -0.62
SQSTM1-206ENST00000466342 OR4F6Q8NGB9 312 aa11.2□□□□□ -0.62
SQSTM1-206ENST00000466342 OR9A4Q8NGU2 314 aa11.2□□□□□ -0.62
SQSTM1-206ENST00000466342 TRPC4APQ8TEL6 797 aa11.2□□□□□ -0.62
SQSTM1-206ENST00000466342 ZNF473Q8WTR7 871 aaKnown RBP11.2□□□□□ -0.62
SQSTM1-206ENST00000466342 GAL3ST3Q96A11 431 aa11.2□□□□□ -0.62
SQSTM1-206ENST00000466342 TLCD1Q96CP7 247 aa11.2□□□□□ -0.62
SQSTM1-206ENST00000466342 REPS1Q96D71 796 aa11.2□□□□□ -0.62
SQSTM1-206ENST00000466342 MMABQ96EY8 250 aaPredicted RBP11.2□□□□□ -0.62
SQSTM1-206ENST00000466342 ZNF382Q96SR6 550 aa11.2□□□□□ -0.62
SQSTM1-206ENST00000466342 CRB3Q9BUF7 120 aa11.2□□□□□ -0.62
SQSTM1-206ENST00000466342 REPIN1Q9BWE0 567 aaKnown RBP11.2□□□□□ -0.62
SQSTM1-206ENST00000466342 TGIF2Q9GZN2 237 aa11.2□□□□□ -0.62
SQSTM1-206ENST00000466342 EPS8L2Q9H6S3 715 aa11.2□□□□□ -0.62
SQSTM1-206ENST00000466342 ANKHQ9HCJ1 492 aa11.2□□□□□ -0.62
SQSTM1-206ENST00000466342 TRPS1Q9UHF7 1281 aa11.2□□□□□ -0.62
SQSTM1-206ENST00000466342 ADGRE2Q9UHX3 823 aa11.2□□□□□ -0.62
SQSTM1-206ENST00000466342 FBXL4Q9UKA2 621 aa11.2□□□□□ -0.62
SQSTM1-206ENST00000466342 GTF3C1Q12789 2109 aa11.2□□□□□ -0.62
SQSTM1-206ENST00000466342 UQCRHLA0A096LP55 91 aa11.19□□□□□ -0.62
SQSTM1-206ENST00000466342 PPP6CO00743 305 aa11.19□□□□□ -0.62
SQSTM1-206ENST00000466342 TRIM13O60858 407 aa11.19□□□□□ -0.62
SQSTM1-206ENST00000466342 KLHL18O94889 574 aa11.19□□□□□ -0.62
SQSTM1-206ENST00000466342 UNC5CO95185 931 aa11.19□□□□□ -0.62
SQSTM1-206ENST00000466342 ZWINTO95229 277 aa11.19□□□□□ -0.62
SQSTM1-206ENST00000466342 TBX6O95947 436 aaPredicted RBP11.19□□□□□ -0.62
SQSTM1-206ENST00000466342 UQCRHP07919 91 aa11.19□□□□□ -0.62
SQSTM1-206ENST00000466342 ZNF888P0CJ79 500 aaPredicted RBP11.19□□□□□ -0.62
SQSTM1-206ENST00000466342 SMIM10L1P0DMW3 83 aa11.19□□□□□ -0.62
SQSTM1-206ENST00000466342 ALOX12P18054 663 aa11.19□□□□□ -0.62
SQSTM1-206ENST00000466342 ALDH3A1P30838 453 aa11.19□□□□□ -0.62
SQSTM1-206ENST00000466342 HNRNPH1P31943 449 aaKnown RBP11.19□□□□□ -0.62
SQSTM1-206ENST00000466342 PIK3CBP42338 1070 aa11.19□□□□□ -0.62
SQSTM1-206ENST00000466342 PKNOX1P55347 436 aa11.19□□□□□ -0.62
SQSTM1-206ENST00000466342 SKP1P63208 163 aa11.19□□□□□ -0.62
SQSTM1-206ENST00000466342 PHEXP78562 749 aa11.19□□□□□ -0.62
SQSTM1-206ENST00000466342 ASPHQ12797 758 aa11.19□□□□□ -0.62
SQSTM1-206ENST00000466342 CDSNQ15517 529 aa11.19□□□□□ -0.62
SQSTM1-206ENST00000466342 ADPRMQ3LIE5 342 aa11.19□□□□□ -0.62
SQSTM1-206ENST00000466342 CFAP157Q5JU67 520 aa11.19□□□□□ -0.62
SQSTM1-206ENST00000466342 AGBL2Q5U5Z8 902 aa11.19□□□□□ -0.62
SQSTM1-206ENST00000466342 IRAK1BP1Q5VVH5 260 aa11.19□□□□□ -0.62
SQSTM1-206ENST00000466342 NIPAL1Q6NVV3 410 aa11.19□□□□□ -0.62
SQSTM1-206ENST00000466342 PDSS2Q86YH6 399 aa11.19□□□□□ -0.62
SQSTM1-206ENST00000466342 AMER3Q8N944 861 aa11.19□□□□□ -0.62
SQSTM1-206ENST00000466342 ACBD4Q8NC06 268 aa11.19□□□□□ -0.62
SQSTM1-206ENST00000466342 CATSPER1Q8NEC5 780 aa11.19□□□□□ -0.62
SQSTM1-206ENST00000466342 OR11G2Q8NGC1 345 aa11.19□□□□□ -0.62
SQSTM1-206ENST00000466342 OR1N1Q8NGS0 311 aa11.19□□□□□ -0.62
SQSTM1-206ENST00000466342 HUS1BQ8NHY5 278 aa11.19□□□□□ -0.62
SQSTM1-206ENST00000466342 WDR20Q8TBZ3 569 aa11.19□□□□□ -0.62
SQSTM1-206ENST00000466342 UTP15Q8TED0 518 aaKnown RBP11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms