RNA–Protein interactions for RNA: ENST00000450940.5

USP40-207, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 670 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-207ENST00000450940 PCNAP12004 261 aa18.08■□□□□ 0.48
USP40-207ENST00000450940 COL6A2P12110 1019 aa18.08■□□□□ 0.48
USP40-207ENST00000450940 NME2P22392 152 aa18.08■□□□□ 0.48
USP40-207ENST00000450940 AP5B1Q2VPB7 878 aa18.08■□□□□ 0.48
USP40-207ENST00000450940 GALNTL5Q7Z4T8 443 aa18.08■□□□□ 0.48
USP40-207ENST00000450940 TMEM132CQ8N3T6 1108 aa18.08■□□□□ 0.48
USP40-207ENST00000450940 L3MBTL4Q8NA19 623 aa18.08■□□□□ 0.48
USP40-207ENST00000450940 C7orf57Q8NEG2 295 aa18.08■□□□□ 0.48
USP40-207ENST00000450940 HUS1BQ8NHY5 278 aa18.08■□□□□ 0.48
USP40-207ENST00000450940 THAP3Q8WTV1 239 aaPredicted RBP18.08■□□□□ 0.48
USP40-207ENST00000450940 FRMD6Q96NE9 622 aa18.08■□□□□ 0.48
USP40-207ENST00000450940 PAFAH2Q99487 392 aa18.08■□□□□ 0.48
USP40-207ENST00000450940 VPS11Q9H270 941 aa18.08■□□□□ 0.48
USP40-207ENST00000450940 ANGPTL3Q9Y5C1 460 aa18.08■□□□□ 0.48
USP40-207ENST00000450940 CELSR2Q9HCU4 2923 aa18.08■□□□□ 0.48
USP40-207ENST00000450940 GTF3C1Q12789 2109 aa18.07■□□□□ 0.48
USP40-207ENST00000450940 TRBV11-1A0A0K0K1C0 115 aa18.07■□□□□ 0.48
USP40-207ENST00000450940 LRRC14BA6NHZ5 514 aa18.07■□□□□ 0.48
USP40-207ENST00000450940 SLC25A12O75746 678 aa18.07■□□□□ 0.48
USP40-207ENST00000450940 RBP1P09455 135 aa18.07■□□□□ 0.48
USP40-207ENST00000450940 CNTFP26441 200 aa18.07■□□□□ 0.48
USP40-207ENST00000450940 PIK3CGP48736 1102 aa18.07■□□□□ 0.48
USP40-207ENST00000450940 SRSF11Q05519 484 aaKnown RBP18.07■□□□□ 0.48
USP40-207ENST00000450940 GTF2H2Q13888 395 aa18.07■□□□□ 0.48
USP40-207ENST00000450940 SERTAD2Q14140 314 aa18.07■□□□□ 0.48
USP40-207ENST00000450940 ZRSR2Q15696 482 aaKnown RBP18.07■□□□□ 0.48
USP40-207ENST00000450940 KRTCAP3Q53RY4 240 aa18.07■□□□□ 0.48
USP40-207ENST00000450940 OR4C11Q6IEV9 310 aa18.07■□□□□ 0.48
USP40-207ENST00000450940 GTF2H2CQ6P1K8 395 aa18.07■□□□□ 0.48
USP40-207ENST00000450940 GOLGA7Q7Z5G4 137 aa18.07■□□□□ 0.48
USP40-207ENST00000450940 CLNKQ7Z7G1 428 aa18.07■□□□□ 0.48
USP40-207ENST00000450940 MORN4Q8NDC4 146 aa18.07■□□□□ 0.48
USP40-207ENST00000450940 PTPMT1Q8WUK0 201 aaPredicted RBP18.07■□□□□ 0.48
USP40-207ENST00000450940 DCAKDQ8WVC6 231 aa18.07■□□□□ 0.48
USP40-207ENST00000450940 NCLNQ969V3 563 aa18.07■□□□□ 0.48
USP40-207ENST00000450940 RGMAQ96B86 450 aa18.07■□□□□ 0.48
USP40-207ENST00000450940 ALOXE3Q9BYJ1 711 aa18.07■□□□□ 0.48
USP40-207ENST00000450940 OR51B5Q9H339 312 aa18.07■□□□□ 0.48
USP40-207ENST00000450940 IPPKQ9H8X2 491 aa18.07■□□□□ 0.48
USP40-207ENST00000450940 ACTR8Q9H981 624 aa18.07■□□□□ 0.48
USP40-207ENST00000450940 DMRT3Q9NQL9 472 aa18.07■□□□□ 0.48
USP40-207ENST00000450940 ZNF358Q9NW07 568 aa18.07■□□□□ 0.48
USP40-207ENST00000450940 TMCO1Q9UM00 188 aa18.07■□□□□ 0.48
USP40-207ENST00000450940 TMEM200CA6NKL6 621 aa18.06■□□□□ 0.48
USP40-207ENST00000450940 KRT38O76015 456 aa18.06■□□□□ 0.48
USP40-207ENST00000450940 ZFAND5O76080 213 aa18.06■□□□□ 0.48
USP40-207ENST00000450940 SIX3O95343 332 aaPredicted RBP18.06■□□□□ 0.48
USP40-207ENST00000450940 PTX3P26022 381 aaPredicted RBP18.06■□□□□ 0.48
USP40-207ENST00000450940 SSR2P43308 183 aa18.06■□□□□ 0.48
USP40-207ENST00000450940 IGLV3-21P80748 117 aaPredicted RBP18.06■□□□□ 0.48
USP40-207ENST00000450940 C1QL3Q5VWW1 255 aa18.06■□□□□ 0.48
USP40-207ENST00000450940 TAOK1Q7L7X3 1001 aa18.06■□□□□ 0.48
USP40-207ENST00000450940 SIAH3Q8IW03 269 aa18.06■□□□□ 0.48
USP40-207ENST00000450940 ZCCHC7Q8N3Z6 543 aaKnown RBP18.06■□□□□ 0.48
USP40-207ENST00000450940 RNF175Q8N4F7 328 aa18.06■□□□□ 0.48
USP40-207ENST00000450940 FAM98AQ8NCA5 519 aaKnown RBP18.06■□□□□ 0.48
USP40-207ENST00000450940 OR14A16Q8NHC5 309 aa18.06■□□□□ 0.48
USP40-207ENST00000450940 DAZLQ92904 295 aaKnown RBP18.06■□□□□ 0.48
USP40-207ENST00000450940 ANKRD9Q96BM1 317 aaPredicted RBP18.06■□□□□ 0.48
USP40-207ENST00000450940 GPR137Q96N19 417 aa18.06■□□□□ 0.48
USP40-207ENST00000450940 MS4A12Q9NXJ0 267 aa18.06■□□□□ 0.48
USP40-207ENST00000450940 CPSF2Q9P2I0 782 aaKnown RBP18.06■□□□□ 0.48
USP40-207ENST00000450940 PPT2Q9UMR5 302 aa18.06■□□□□ 0.48
USP40-207ENST00000450940 IKBKGQ9Y6K9 419 aa18.06■□□□□ 0.48
USP40-207ENST00000450940 CLCA3PQ9Y6N3 262 aa18.06■□□□□ 0.48
USP40-207ENST00000450940 SPACA6W5XKT8 324 aa18.06■□□□□ 0.48
USP40-207ENST00000450940 ITPR2Q14571 2701 aa18.06■□□□□ 0.48
USP40-207ENST00000450940 TEX15Q9BXT5 2789 aa18.05■□□□□ 0.48
USP40-207ENST00000450940 A0A087WUV0 522 aaPredicted RBP18.05■□□□□ 0.48
USP40-207ENST00000450940 STX16-NPEPL1H3BU86 382 aa18.05■□□□□ 0.48
USP40-207ENST00000450940 SAP18O00422 153 aaKnown RBP18.05■□□□□ 0.48
USP40-207ENST00000450940 PLPP1O14494 284 aa18.05■□□□□ 0.48
USP40-207ENST00000450940 STX16O14662 325 aa18.05■□□□□ 0.48
USP40-207ENST00000450940 PRKNO60260 465 aaPredicted RBP18.05■□□□□ 0.48
USP40-207ENST00000450940 SH3BGRLO75368 114 aa18.05■□□□□ 0.48
USP40-207ENST00000450940 ITGA10O75578 1167 aa18.05■□□□□ 0.48
USP40-207ENST00000450940 MLYCDO95822 493 aa18.05■□□□□ 0.48
USP40-207ENST00000450940 ALDH6A1Q02252 535 aaKnown RBP18.05■□□□□ 0.48
USP40-207ENST00000450940 RBPJQ06330 500 aa18.05■□□□□ 0.48
USP40-207ENST00000450940 STX4Q12846 297 aa18.05■□□□□ 0.48
USP40-207ENST00000450940 CUL3Q13618 768 aa18.05■□□□□ 0.48
USP40-207ENST00000450940 MAPKAPK3Q16644 382 aa18.05■□□□□ 0.48
USP40-207ENST00000450940 TSNAXIP1Q2TAA8 658 aa18.05■□□□□ 0.48
USP40-207ENST00000450940 PNPLA5Q7Z6Z6 429 aaPredicted RBP18.05■□□□□ 0.48
USP40-207ENST00000450940 FJX1Q86VR8 437 aa18.05■□□□□ 0.48
USP40-207ENST00000450940 KIF18AQ8NI77 898 aa18.05■□□□□ 0.48
USP40-207ENST00000450940 WDR20Q8TBZ3 569 aa18.05■□□□□ 0.48
USP40-207ENST00000450940 REPS1Q96D71 796 aa18.05■□□□□ 0.48
USP40-207ENST00000450940 MTERF1Q99551 399 aaKnown RBP18.05■□□□□ 0.48
USP40-207ENST00000450940 CCDC77Q9BR77 488 aa18.05■□□□□ 0.48
USP40-207ENST00000450940 ZNF717Q9BY31 904 aaPredicted RBP18.05■□□□□ 0.48
USP40-207ENST00000450940 FBXW2Q9UKT8 454 aa18.05■□□□□ 0.48
USP40-207ENST00000450940 ZNF835Q9Y2P0 537 aa18.05■□□□□ 0.48
USP40-207ENST00000450940 YARS2Q9Y2Z4 477 aaKnown RBP18.05■□□□□ 0.48
USP40-207ENST00000450940 RNF11Q9Y3C5 154 aa18.05■□□□□ 0.48
USP40-207ENST00000450940 FOXE1O00358 373 aaPredicted RBP18.04■□□□□ 0.48
USP40-207ENST00000450940 OR7A17O14581 309 aa18.04■□□□□ 0.48
USP40-207ENST00000450940 ZG16O60844 167 aa18.04■□□□□ 0.48
USP40-207ENST00000450940 LDB3O75112 727 aa18.04■□□□□ 0.48
USP40-207ENST00000450940 IFNA16P05015 189 aa18.04■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms