RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 FAM57AQ8TBR7 257 aa6.59□□□□□ -1.35
VPS41-208ENST00000448833 CHTF18Q8WVB6 975 aa6.59□□□□□ -1.35
VPS41-208ENST00000448833 ANKRD49Q8WVL7 239 aa6.59□□□□□ -1.35
VPS41-208ENST00000448833 TANKQ92844 425 aa6.59□□□□□ -1.35
VPS41-208ENST00000448833 REPS1Q96D71 796 aa6.59□□□□□ -1.35
VPS41-208ENST00000448833 C14orf79Q96F83 325 aa6.59□□□□□ -1.35
VPS41-208ENST00000448833 CMTM7Q96FZ5 175 aa6.59□□□□□ -1.35
VPS41-208ENST00000448833 RBM18Q96H35 190 aaKnown RBP6.59□□□□□ -1.35
VPS41-208ENST00000448833 ART5Q96L15 291 aa6.59□□□□□ -1.35
VPS41-208ENST00000448833 UBXN10Q96LJ8 280 aa6.59□□□□□ -1.35
VPS41-208ENST00000448833 PWWP2AQ96N64 755 aa6.59□□□□□ -1.35
VPS41-208ENST00000448833 GPR22Q99680 433 aa6.59□□□□□ -1.35
VPS41-208ENST00000448833 RBBP8Q99708 897 aa6.59□□□□□ -1.35
VPS41-208ENST00000448833 PELOQ9BRX2 385 aaKnown RBP6.59□□□□□ -1.35
VPS41-208ENST00000448833 MCMBPQ9BTE3 642 aa6.59□□□□□ -1.35
VPS41-208ENST00000448833 HES7Q9BYE0 225 aa6.59□□□□□ -1.35
VPS41-208ENST00000448833 ALOXE3Q9BYJ1 711 aa6.59□□□□□ -1.35
VPS41-208ENST00000448833 CD244Q9BZW8 370 aa6.59□□□□□ -1.35
VPS41-208ENST00000448833 SPNS1Q9H2V7 528 aa6.59□□□□□ -1.35
VPS41-208ENST00000448833 SAYSD1Q9NPB0 183 aa6.59□□□□□ -1.35
VPS41-208ENST00000448833 SLC17A6Q9P2U8 582 aa6.59□□□□□ -1.35
VPS41-208ENST00000448833 PTBP2Q9UKA9 531 aaKnown RBP6.59□□□□□ -1.35
VPS41-208ENST00000448833 PPT2Q9UMR5 302 aa6.59□□□□□ -1.35
VPS41-208ENST00000448833 SNX24Q9Y343 169 aa6.59□□□□□ -1.35
VPS41-208ENST00000448833 PCDHGA11Q9Y5H2 935 aa6.59□□□□□ -1.35
VPS41-208ENST00000448833 ABCA12Q86UK0 2595 aa6.59□□□□□ -1.36
VPS41-208ENST00000448833 ARHGAP21Q5T5U3 1957 aa6.58□□□□□ -1.36
VPS41-208ENST00000448833 A0A1B0GTH9 108 aa6.58□□□□□ -1.36
VPS41-208ENST00000448833 TCRBV9S1A1TA0A576 114 aa6.58□□□□□ -1.36
VPS41-208ENST00000448833 FAM159BA6NKW6 160 aa6.58□□□□□ -1.36
VPS41-208ENST00000448833 K7EPI3 171 aa6.58□□□□□ -1.36
VPS41-208ENST00000448833 CYR61O00622 381 aa6.58□□□□□ -1.36
VPS41-208ENST00000448833 BCKDKO14874 412 aa6.58□□□□□ -1.36
VPS41-208ENST00000448833 MAN1A2O60476 641 aa6.58□□□□□ -1.36
VPS41-208ENST00000448833 CCNT2O60583 730 aaKnown RBP6.58□□□□□ -1.36
VPS41-208ENST00000448833 DNAJB6O75190 326 aa6.58□□□□□ -1.36
VPS41-208ENST00000448833 OR2J2O76002 312 aa6.58□□□□□ -1.36
VPS41-208ENST00000448833 B3GALT4O96024 378 aa6.58□□□□□ -1.36
VPS41-208ENST00000448833 P04436 131 aa6.58□□□□□ -1.36
VPS41-208ENST00000448833 TPOP07202 933 aa6.58□□□□□ -1.36
VPS41-208ENST00000448833 EPB42P16452 691 aa6.58□□□□□ -1.36
VPS41-208ENST00000448833 CNR1P21554 472 aa6.58□□□□□ -1.36
VPS41-208ENST00000448833 PTX3P26022 381 aaPredicted RBP6.58□□□□□ -1.36
VPS41-208ENST00000448833 GRNP28799 593 aaKnown RBP6.58□□□□□ -1.36
VPS41-208ENST00000448833 SSTR1P30872 391 aa6.58□□□□□ -1.36
VPS41-208ENST00000448833 CHRNB4P30926 498 aa6.58□□□□□ -1.36
VPS41-208ENST00000448833 PIK3CBP42338 1070 aa6.58□□□□□ -1.36
VPS41-208ENST00000448833 PIK3CGP48736 1102 aa6.58□□□□□ -1.36
VPS41-208ENST00000448833 HSPA7P48741 367 aa6.58□□□□□ -1.36
VPS41-208ENST00000448833 GPR143P51810 404 aa6.58□□□□□ -1.36
VPS41-208ENST00000448833 ADORA2A-AS1P86434 159 aa6.58□□□□□ -1.36
VPS41-208ENST00000448833 PLGLB1Q02325 96 aa6.58□□□□□ -1.36
VPS41-208ENST00000448833 GUCA2AQ02747 115 aa6.58□□□□□ -1.36
VPS41-208ENST00000448833 CHIT1Q13231 466 aa6.58□□□□□ -1.36
VPS41-208ENST00000448833 E2F2Q14209 437 aa6.58□□□□□ -1.36
VPS41-208ENST00000448833 ZNF460Q14592 562 aa6.58□□□□□ -1.36
VPS41-208ENST00000448833 FAM83EQ2M2I3 478 aa6.58□□□□□ -1.36
VPS41-208ENST00000448833 MPEG1Q2M385 716 aa6.58□□□□□ -1.36
VPS41-208ENST00000448833 ZNF468Q5VIY5 522 aaPredicted RBP6.58□□□□□ -1.36
VPS41-208ENST00000448833 LIPJQ5W064 366 aa6.58□□□□□ -1.36
VPS41-208ENST00000448833 KLC3Q6P597 504 aa6.58□□□□□ -1.36
VPS41-208ENST00000448833 IL20RBQ6UXL0 311 aa6.58□□□□□ -1.36
VPS41-208ENST00000448833 RTL4Q6ZR62 310 aa6.58□□□□□ -1.36
VPS41-208ENST00000448833 ZNF227Q86WZ6 799 aa6.58□□□□□ -1.36
VPS41-208ENST00000448833 CTAGE3PQ8IX95 158 aa6.58□□□□□ -1.36
VPS41-208ENST00000448833 LAS2Q8IYD9 372 aa6.58□□□□□ -1.36
VPS41-208ENST00000448833 SLC15A4Q8N697 577 aa6.58□□□□□ -1.36
VPS41-208ENST00000448833 ACOT4Q8N9L9 421 aa6.58□□□□□ -1.36
VPS41-208ENST00000448833 PSD4Q8NDX1 1056 aa6.58□□□□□ -1.36
VPS41-208ENST00000448833 MYRIPQ8NFW9 859 aa6.58□□□□□ -1.36
VPS41-208ENST00000448833 RHEBL1Q8TAI7 183 aa6.58□□□□□ -1.36
VPS41-208ENST00000448833 RND1Q92730 232 aa6.58□□□□□ -1.36
VPS41-208ENST00000448833 NCLNQ969V3 563 aa6.58□□□□□ -1.36
VPS41-208ENST00000448833 RGMAQ96B86 450 aa6.58□□□□□ -1.36
VPS41-208ENST00000448833 QRFPRQ96P65 431 aa6.58□□□□□ -1.36
VPS41-208ENST00000448833 DMRTA2Q96SC8 542 aa6.58□□□□□ -1.36
VPS41-208ENST00000448833 FAM173AQ9BQD7 235 aa6.58□□□□□ -1.36
VPS41-208ENST00000448833 TSPYL1Q9H0U9 437 aa6.58□□□□□ -1.36
VPS41-208ENST00000448833 TSPAN10Q9H1Z9 355 aaPredicted RBP6.58□□□□□ -1.36
VPS41-208ENST00000448833 WDR41Q9HAD4 459 aa6.58□□□□□ -1.36
VPS41-208ENST00000448833 KCNJ16Q9NPI9 418 aa6.58□□□□□ -1.36
VPS41-208ENST00000448833 PRDM7Q9NQW5 492 aa6.58□□□□□ -1.36
VPS41-208ENST00000448833 PSD3Q9NYI0 1048 aa6.58□□□□□ -1.36
VPS41-208ENST00000448833 NUDT4Q9NZJ9 180 aa6.58□□□□□ -1.36
VPS41-208ENST00000448833 KCMF1Q9P0J7 381 aa6.58□□□□□ -1.36
VPS41-208ENST00000448833 OPTCQ9UBM4 332 aa6.58□□□□□ -1.36
VPS41-208ENST00000448833 PHF11Q9UIL8 331 aa6.58□□□□□ -1.36
VPS41-208ENST00000448833 ZNF490Q9ULM2 529 aaPredicted RBP6.58□□□□□ -1.36
VPS41-208ENST00000448833 EDARQ9UNE0 448 aa6.58□□□□□ -1.36
VPS41-208ENST00000448833 MTO1Q9Y2Z2 717 aaKnown RBP6.58□□□□□ -1.36
VPS41-208ENST00000448833 ACOT9Q9Y305 439 aa6.58□□□□□ -1.36
VPS41-208ENST00000448833 TSC22D4Q9Y3Q8 395 aa6.58□□□□□ -1.36
VPS41-208ENST00000448833 ASB1Q9Y576 335 aa6.58□□□□□ -1.36
VPS41-208ENST00000448833 ANGPTL3Q9Y5C1 460 aa6.58□□□□□ -1.36
VPS41-208ENST00000448833 TNPO3Q9Y5L0 923 aaKnown RBP6.58□□□□□ -1.36
VPS41-208ENST00000448833 ZNF407Q9C0G0 2248 aa6.58□□□□□ -1.36
VPS41-208ENST00000448833 PDZD2O15018 2839 aa6.57□□□□□ -1.36
VPS41-208ENST00000448833 A0A087X1B8 175 aa6.57□□□□□ -1.36
VPS41-208ENST00000448833 FIGNL2A6NMB9 653 aa6.57□□□□□ -1.36
VPS41-208ENST00000448833 CAPN14A8MX76 684 aa6.57□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms