RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 PCDHB3Q9Y5E6 796 aa16.51■□□□□ 0.23
PTPRF-209ENST00000438120 A0A0U1RQS6 177 aa16.5■□□□□ 0.23
PTPRF-209ENST00000438120 HTR3EA5X5Y0 456 aa16.5■□□□□ 0.23
PTPRF-209ENST00000438120 PFKLP17858 780 aa16.5■□□□□ 0.23
PTPRF-209ENST00000438120 SGCAQ16586 387 aa16.5■□□□□ 0.23
PTPRF-209ENST00000438120 FBXO43Q4G163 708 aa16.5■□□□□ 0.23
PTPRF-209ENST00000438120 IER5LQ5T953 404 aa16.5■□□□□ 0.23
PTPRF-209ENST00000438120 TSPAN33Q86UF1 283 aa16.5■□□□□ 0.23
PTPRF-209ENST00000438120 UMODL1-AS1Q8N2C9 162 aa16.5■□□□□ 0.23
PTPRF-209ENST00000438120 TPSD1Q9BZJ3 242 aa16.5■□□□□ 0.23
PTPRF-209ENST00000438120 GSKIPQ9P0R6 139 aa16.5■□□□□ 0.23
PTPRF-209ENST00000438120 MAP2K4P45985 399 aa16.5■□□□□ 0.23
PTPRF-209ENST00000438120 DEFA5Q01523 94 aa16.5■□□□□ 0.23
PTPRF-209ENST00000438120 EXOC3L2Q2M3D2 409 aa16.5■□□□□ 0.23
PTPRF-209ENST00000438120 BEND4Q6ZU67 534 aa16.5■□□□□ 0.23
PTPRF-209ENST00000438120 CASTOR1Q8WTX7 329 aa16.5■□□□□ 0.23
PTPRF-209ENST00000438120 TMEM40Q8WWA1 233 aa16.5■□□□□ 0.23
PTPRF-209ENST00000438120 DPAGT1Q9H3H5 408 aa16.5■□□□□ 0.23
PTPRF-209ENST00000438120 ACSL6Q9UKU0 697 aa16.5■□□□□ 0.23
PTPRF-209ENST00000438120 SDHDO14521 159 aa16.5■□□□□ 0.23
PTPRF-209ENST00000438120 SNAP29O95721 258 aa16.5■□□□□ 0.23
PTPRF-209ENST00000438120 SLC15A1P46059 708 aa16.5■□□□□ 0.23
PTPRF-209ENST00000438120 ARSDP51689 593 aa16.5■□□□□ 0.23
PTPRF-209ENST00000438120 NKAPLQ5M9Q1 402 aa16.5■□□□□ 0.23
PTPRF-209ENST00000438120 LRRC42Q9Y546 428 aa16.5■□□□□ 0.23
PTPRF-209ENST00000438120 SDC3O75056 442 aa16.5■□□□□ 0.23
PTPRF-209ENST00000438120 MT-ND5P03915 603 aa16.5■□□□□ 0.23
PTPRF-209ENST00000438120 XKR5Q6UX68 686 aa16.5■□□□□ 0.23
PTPRF-209ENST00000438120 TTC9BQ8N6N2 239 aa16.5■□□□□ 0.23
PTPRF-209ENST00000438120 FAM86B1Q8N7N1 296 aa16.5■□□□□ 0.23
PTPRF-209ENST00000438120 C12orf43Q96C57 262 aaKnown RBP16.5■□□□□ 0.23
PTPRF-209ENST00000438120 HSPA12BQ96MM6 686 aa16.5■□□□□ 0.23
PTPRF-209ENST00000438120 MUS81Q96NY9 551 aa16.5■□□□□ 0.23
PTPRF-209ENST00000438120 GMLQ99445 158 aa16.5■□□□□ 0.23
PTPRF-209ENST00000438120 MGAT4BQ9UQ53 548 aa16.5■□□□□ 0.23
PTPRF-209ENST00000438120 SLC35E2BP0CK96 405 aa16.5■□□□□ 0.23
PTPRF-209ENST00000438120 CD70P32970 193 aa16.5■□□□□ 0.23
PTPRF-209ENST00000438120 ARSFP54793 590 aa16.5■□□□□ 0.23
PTPRF-209ENST00000438120 HNRNPA0Q13151 305 aaKnown RBP16.5■□□□□ 0.23
PTPRF-209ENST00000438120 LRIT3Q3SXY7 679 aa16.5■□□□□ 0.23
PTPRF-209ENST00000438120 CRTC1Q6UUV9 634 aa16.5■□□□□ 0.23
PTPRF-209ENST00000438120 PNPLA1Q8N8W4 532 aa16.5■□□□□ 0.23
PTPRF-209ENST00000438120 SFXN1Q9H9B4 322 aa16.5■□□□□ 0.23
PTPRF-209ENST00000438120 CMAHPQ9Y471 501 aa16.5■□□□□ 0.23
PTPRF-209ENST00000438120 PARP4Q9UKK3 1724 aaKnown RBP16.5■□□□□ 0.23
PTPRF-209ENST00000438120 HTRA2O43464 458 aaPredicted RBP16.49■□□□□ 0.23
PTPRF-209ENST00000438120 GSRP00390 522 aa16.49■□□□□ 0.23
PTPRF-209ENST00000438120 BCKDHAP12694 445 aa16.49■□□□□ 0.23
PTPRF-209ENST00000438120 GNG2P59768 71 aa16.49■□□□□ 0.23
PTPRF-209ENST00000438120 GAS6Q14393 721 aa16.49■□□□□ 0.23
PTPRF-209ENST00000438120 OGFRL1Q5TC84 451 aaPredicted RBP16.49■□□□□ 0.23
PTPRF-209ENST00000438120 PLCZ1Q86YW0 608 aa16.49■□□□□ 0.23
PTPRF-209ENST00000438120 UBQLNLQ8IYU4 475 aa16.49■□□□□ 0.23
PTPRF-209ENST00000438120 GALNT11Q8NCW6 608 aa16.49■□□□□ 0.23
PTPRF-209ENST00000438120 OR2L2Q8NH16 312 aa16.49■□□□□ 0.23
PTPRF-209ENST00000438120 NFS1Q9Y697 457 aa16.49■□□□□ 0.23
PTPRF-209ENST00000438120 C6P13671 934 aa16.49■□□□□ 0.23
PTPRF-209ENST00000438120 TIA1P31483 386 aaKnown RBP eCLIP16.49■□□□□ 0.23
PTPRF-209ENST00000438120 MVKQ03426 396 aa16.49■□□□□ 0.23
PTPRF-209ENST00000438120 FAM214AQ32MH5 1076 aa16.49■□□□□ 0.23
PTPRF-209ENST00000438120 NLGN4XQ8N0W4 816 aa16.49■□□□□ 0.23
PTPRF-209ENST00000438120 OR1F2PQ96R84 312 aa16.49■□□□□ 0.23
PTPRF-209ENST00000438120 KCNC1P48547 511 aa16.49■□□□□ 0.23
PTPRF-209ENST00000438120 NTHL1P78549 312 aa16.49■□□□□ 0.23
PTPRF-209ENST00000438120 RING1Q06587 406 aa16.49■□□□□ 0.23
PTPRF-209ENST00000438120 NIPAL4Q0D2K0 466 aa16.49■□□□□ 0.23
PTPRF-209ENST00000438120 DOC2AQ14183 400 aa16.49■□□□□ 0.23
PTPRF-209ENST00000438120 NCEH1Q6PIU2 408 aa16.49■□□□□ 0.23
PTPRF-209ENST00000438120 TIGARQ9NQ88 270 aa16.49■□□□□ 0.23
PTPRF-209ENST00000438120 UNCXA6NJT0 531 aa16.49■□□□□ 0.23
PTPRF-209ENST00000438120 TGM5O43548 720 aa16.49■□□□□ 0.23
PTPRF-209ENST00000438120 CYP17A1P05093 508 aa16.49■□□□□ 0.23
PTPRF-209ENST00000438120 FXYD6P3P58550 94 aa16.49■□□□□ 0.23
PTPRF-209ENST00000438120 ZMYND11Q15326 602 aa16.49■□□□□ 0.23
PTPRF-209ENST00000438120 OR4D1Q15615 310 aa16.49■□□□□ 0.23
PTPRF-209ENST00000438120 FIGNL1Q6PIW4 674 aa16.49■□□□□ 0.23
PTPRF-209ENST00000438120 SLC37A3Q8NCC5 494 aa16.49■□□□□ 0.23
PTPRF-209ENST00000438120 OR5P2Q8WZ92 322 aa16.49■□□□□ 0.23
PTPRF-209ENST00000438120 FBLP22087 321 aaKnown RBP16.49■□□□□ 0.23
PTPRF-209ENST00000438120 LHCGRP22888 699 aa16.49■□□□□ 0.23
PTPRF-209ENST00000438120 MAGEA12P43365 314 aa16.49■□□□□ 0.23
PTPRF-209ENST00000438120 CATSPEREQ5SY80 951 aa16.49■□□□□ 0.23
PTPRF-209ENST00000438120 ZNF783Q6ZMS7 281 aa16.49■□□□□ 0.23
PTPRF-209ENST00000438120 NPWQ8N729 165 aa16.49■□□□□ 0.23
PTPRF-209ENST00000438120 DENND1AQ8TEH3 1009 aa16.49■□□□□ 0.23
PTPRF-209ENST00000438120 CCDC106Q9BWC9 280 aa16.49■□□□□ 0.23
PTPRF-209ENST00000438120 BOCQ9BWV1 1114 aa16.49■□□□□ 0.23
PTPRF-209ENST00000438120 YTHDF1Q9BYJ9 559 aaKnown RBP16.49■□□□□ 0.23
PTPRF-209ENST00000438120 HAPLN2Q9GZV7 340 aa16.49■□□□□ 0.23
PTPRF-209ENST00000438120 KCNK12Q9HB15 430 aa16.49■□□□□ 0.23
PTPRF-209ENST00000438120 TRAV6A0A075B6T7 132 aa16.48■□□□□ 0.23
PTPRF-209ENST00000438120 CSF2P04141 144 aa16.48■□□□□ 0.23
PTPRF-209ENST00000438120 PLCXD2Q0VAA5 305 aa16.48■□□□□ 0.23
PTPRF-209ENST00000438120 PON2Q15165 354 aa16.48■□□□□ 0.23
PTPRF-209ENST00000438120 OR52B6Q8NGF0 335 aa16.48■□□□□ 0.23
PTPRF-209ENST00000438120 SRA1Q9HD15 236 aaKnown RBP16.48■□□□□ 0.23
PTPRF-209ENST00000438120 FTSJ1Q9UET6 329 aa16.48■□□□□ 0.23
PTPRF-209ENST00000438120 PHLPP1O60346 1717 aa16.48■□□□□ 0.23
PTPRF-209ENST00000438120 SOCS2O14508 198 aa16.48■□□□□ 0.23
PTPRF-209ENST00000438120 CD72P21854 359 aa16.48■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms