RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 HORMAD2Q8N7B1 307 aa9.41□□□□□ -0.9
SS18-203ENST00000415083 AMER3Q8N944 861 aa9.41□□□□□ -0.9
SS18-203ENST00000415083 MYDGFQ969H8 173 aa9.41□□□□□ -0.9
SS18-203ENST00000415083 GDF15Q99988 308 aa9.41□□□□□ -0.9
SS18-203ENST00000415083 AICDAQ9GZX7 198 aa9.41□□□□□ -0.9
SS18-203ENST00000415083 MVB12BQ9H7P6 319 aa9.41□□□□□ -0.9
SS18-203ENST00000415083 C5AR2Q9P296 337 aa9.41□□□□□ -0.9
SS18-203ENST00000415083 KLK4Q9Y5K2 254 aa9.41□□□□□ -0.9
SS18-203ENST00000415083 A8MVJ9 347 aa9.4□□□□□ -0.9
SS18-203ENST00000415083 CSO75390 466 aaKnown RBP9.4□□□□□ -0.9
SS18-203ENST00000415083 URODP06132 367 aa9.4□□□□□ -0.9
SS18-203ENST00000415083 KLK1P06870 262 aa9.4□□□□□ -0.9
SS18-203ENST00000415083 IL3P08700 152 aa9.4□□□□□ -0.9
SS18-203ENST00000415083 ITGB8P26012 769 aa9.4□□□□□ -0.9
SS18-203ENST00000415083 MNX1P50219 401 aaPredicted RBP9.4□□□□□ -0.9
SS18-203ENST00000415083 TAP2Q03519 686 aa9.4□□□□□ -0.9
SS18-203ENST00000415083 FCHO2Q0JRZ9 810 aa9.4□□□□□ -0.9
SS18-203ENST00000415083 UAP1L1Q3KQV9 507 aa9.4□□□□□ -0.9
SS18-203ENST00000415083 TUBA3EQ6PEY2 450 aa9.4□□□□□ -0.9
SS18-203ENST00000415083 METTL2AQ96IZ6 378 aaKnown RBP9.4□□□□□ -0.9
SS18-203ENST00000415083 LRRC3BQ96PB8 259 aa9.4□□□□□ -0.9
SS18-203ENST00000415083 IL17FQ96PD4 163 aa9.4□□□□□ -0.9
SS18-203ENST00000415083 IL4I1Q96RQ9 567 aa9.4□□□□□ -0.9
SS18-203ENST00000415083 MGLLQ99685 303 aa9.4□□□□□ -0.9
SS18-203ENST00000415083 ROGDIQ9GZN7 287 aa9.4□□□□□ -0.9
SS18-203ENST00000415083 SIRT3Q9NTG7 399 aaPredicted RBP9.4□□□□□ -0.9
SS18-203ENST00000415083 NDOR1Q9UHB4 597 aa9.4□□□□□ -0.9
SS18-203ENST00000415083 OGDHLQ9ULD0 1010 aa9.4□□□□□ -0.9
SS18-203ENST00000415083 HEATR5BQ9P2D3 2071 aa9.4□□□□□ -0.9
SS18-203ENST00000415083 TRBC2A0A5B9 178 aa9.4□□□□□ -0.9
SS18-203ENST00000415083 PLK4O00444 970 aa9.4□□□□□ -0.9
SS18-203ENST00000415083 AP2A2O94973 939 aa9.4□□□□□ -0.9
SS18-203ENST00000415083 SOX14O95416 240 aa9.4□□□□□ -0.9
SS18-203ENST00000415083 ANXA8P13928 327 aa9.4□□□□□ -0.9
SS18-203ENST00000415083 SERPINB1P30740 379 aa9.4□□□□□ -0.9
SS18-203ENST00000415083 ASMTP46597 345 aa9.4□□□□□ -0.9
SS18-203ENST00000415083 GJA8P48165 433 aa9.4□□□□□ -0.9
SS18-203ENST00000415083 TEAD4Q15561 434 aa9.4□□□□□ -0.9
SS18-203ENST00000415083 BCL7AQ4VC05 210 aa9.4□□□□□ -0.9
SS18-203ENST00000415083 TCTN3Q6NUS6 607 aa9.4□□□□□ -0.9
SS18-203ENST00000415083 TMEM220Q6QAJ8 160 aa9.4□□□□□ -0.9
SS18-203ENST00000415083 ANGPTL8Q6UXH0 198 aa9.4□□□□□ -0.9
SS18-203ENST00000415083 LIPIQ6XZB0 460 aa9.4□□□□□ -0.9
SS18-203ENST00000415083 C2orf73Q8N5S3 287 aaPredicted RBP9.4□□□□□ -0.9
SS18-203ENST00000415083 GLYATL1Q969I3 302 aa9.4□□□□□ -0.9
SS18-203ENST00000415083 CEP44Q9C0F1 390 aa9.4□□□□□ -0.9
SS18-203ENST00000415083 KLHL3Q9UH77 587 aa9.4□□□□□ -0.9
SS18-203ENST00000415083 PLAGL1Q9UM63 463 aa9.4□□□□□ -0.9
SS18-203ENST00000415083 ENPP4Q9Y6X5 453 aa9.4□□□□□ -0.9
SS18-203ENST00000415083 SNRNP200O75643 2136 aaKnown RBP9.4□□□□□ -0.9
SS18-203ENST00000415083 SYN1P17600 705 aa9.4□□□□□ -0.91
SS18-203ENST00000415083 TNFSF8P32971 234 aa9.4□□□□□ -0.91
SS18-203ENST00000415083 MMP12P39900 470 aa9.4□□□□□ -0.91
SS18-203ENST00000415083 CRISP1P54107 249 aa9.4□□□□□ -0.91
SS18-203ENST00000415083 C2orf80Q0P641 193 aa9.4□□□□□ -0.91
SS18-203ENST00000415083 EIF4HQ15056 248 aaKnown RBP9.4□□□□□ -0.91
SS18-203ENST00000415083 ANXA8L1Q5VT79 327 aa9.4□□□□□ -0.91
SS18-203ENST00000415083 PLAG1Q6DJT9 500 aa9.4□□□□□ -0.91
SS18-203ENST00000415083 DDX53Q86TM3 631 aaKnown RBP9.4□□□□□ -0.91
SS18-203ENST00000415083 SFTPA1Q8IWL2 248 aa9.4□□□□□ -0.91
SS18-203ENST00000415083 ANKRD53Q8N9V6 530 aa9.4□□□□□ -0.91
SS18-203ENST00000415083 SLC38A5Q8WUX1 472 aa9.4□□□□□ -0.91
SS18-203ENST00000415083 VPS35Q96QK1 796 aa9.4□□□□□ -0.91
SS18-203ENST00000415083 POLMQ9NP87 494 aaPredicted RBP9.4□□□□□ -0.91
SS18-203ENST00000415083 C11orf16Q9NQ32 467 aa9.4□□□□□ -0.91
SS18-203ENST00000415083 HCN4Q9Y3Q4 1203 aa9.4□□□□□ -0.91
SS18-203ENST00000415083 DENND4AQ7Z401 1863 aa9.39□□□□□ -0.91
SS18-203ENST00000415083 MN1Q10571 1320 aaPredicted RBP9.39□□□□□ -0.91
SS18-203ENST00000415083 A0A0B4J293 547 aa9.39□□□□□ -0.91
SS18-203ENST00000415083 MGAT4DA6NG13 374 aa9.39□□□□□ -0.91
SS18-203ENST00000415083 FOXE1O00358 373 aaPredicted RBP9.39□□□□□ -0.91
SS18-203ENST00000415083 RTCAO00442 366 aaKnown RBP9.39□□□□□ -0.91
SS18-203ENST00000415083 SNPHO15079 494 aa9.39□□□□□ -0.91
SS18-203ENST00000415083 PTTG1O95997 202 aa9.39□□□□□ -0.91
SS18-203ENST00000415083 MSL3P1P0C860 447 aa9.39□□□□□ -0.91
SS18-203ENST00000415083 ATN1P54259 1190 aaPredicted RBP9.39□□□□□ -0.91
SS18-203ENST00000415083 EFNB1P98172 346 aa9.39□□□□□ -0.91
SS18-203ENST00000415083 MED27Q6P2C8 311 aa9.39□□□□□ -0.91
SS18-203ENST00000415083 PARS2Q7L3T8 475 aaKnown RBP9.39□□□□□ -0.91
SS18-203ENST00000415083 NANOGNBQ7Z5D8 188 aa9.39□□□□□ -0.91
SS18-203ENST00000415083 ABI3BPQ7Z7G0 1075 aa9.39□□□□□ -0.91
SS18-203ENST00000415083 C11orf96Q7Z7L8 435 aa9.39□□□□□ -0.91
SS18-203ENST00000415083 OR6F1Q8NGZ6 308 aa9.39□□□□□ -0.91
SS18-203ENST00000415083 GPR151Q8TDV0 419 aa9.39□□□□□ -0.91
SS18-203ENST00000415083 RNF31Q96EP0 1072 aa9.39□□□□□ -0.91
SS18-203ENST00000415083 DHRS1Q96LJ7 313 aa9.39□□□□□ -0.91
SS18-203ENST00000415083 ZSWIM3Q96MP5 696 aa9.39□□□□□ -0.91
SS18-203ENST00000415083 MIXL1Q9H2W2 232 aa9.39□□□□□ -0.91
SS18-203ENST00000415083 MYNNQ9NPC7 610 aa9.39□□□□□ -0.91
SS18-203ENST00000415083 NFKBIL1Q9UBC1 381 aaPredicted RBP9.39□□□□□ -0.91
SS18-203ENST00000415083 LSM7Q9UK45 103 aaKnown RBP9.39□□□□□ -0.91
SS18-203ENST00000415083 CXorf51AA0A1B0GTR3 108 aa9.39□□□□□ -0.91
SS18-203ENST00000415083 PLPP1O14494 284 aa9.39□□□□□ -0.91
SS18-203ENST00000415083 GRM6O15303 877 aa9.39□□□□□ -0.91
SS18-203ENST00000415083 MFN2O95140 757 aa9.39□□□□□ -0.91
SS18-203ENST00000415083 PAPLNO95428 1278 aa9.39□□□□□ -0.91
SS18-203ENST00000415083 MYCP01106 439 aaPredicted RBP9.39□□□□□ -0.91
SS18-203ENST00000415083 ALOX12P18054 663 aa9.39□□□□□ -0.91
SS18-203ENST00000415083 ELAVL4P26378 380 aaKnown RBP9.39□□□□□ -0.91
SS18-203ENST00000415083 ACADLP28330 430 aa9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms