RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 TRIB2Q92519 343 aa12.88□□□□□ -0.35
CCDC88A-204ENST00000413716 CD84Q9UIB8 345 aa12.88□□□□□ -0.35
CCDC88A-204ENST00000413716 MYPNQ86TC9 1320 aa12.88□□□□□ -0.35
CCDC88A-204ENST00000413716 TRBC2A0A5B9 178 aa12.88□□□□□ -0.35
CCDC88A-204ENST00000413716 SHOX2O60902 331 aaPredicted RBP12.88□□□□□ -0.35
CCDC88A-204ENST00000413716 CD53P19397 219 aa12.88□□□□□ -0.35
CCDC88A-204ENST00000413716 CSNK2A2P19784 350 aaPredicted RBP12.88□□□□□ -0.35
CCDC88A-204ENST00000413716 AK4P27144 223 aaPredicted RBP12.88□□□□□ -0.35
CCDC88A-204ENST00000413716 TRIM23P36406 574 aa12.88□□□□□ -0.35
CCDC88A-204ENST00000413716 PTGER3P43115 390 aa12.88□□□□□ -0.35
CCDC88A-204ENST00000413716 TGFB2P61812 414 aa12.88□□□□□ -0.35
CCDC88A-204ENST00000413716 ITPRIPL2Q3MIP1 535 aa12.88□□□□□ -0.35
CCDC88A-204ENST00000413716 AMZ2Q86W34 360 aa12.88□□□□□ -0.35
CCDC88A-204ENST00000413716 SPOCK2Q92563 424 aa12.88□□□□□ -0.35
CCDC88A-204ENST00000413716 MAL2Q969L2 176 aa12.88□□□□□ -0.35
CCDC88A-204ENST00000413716 SLC19A3Q9BZV2 496 aa12.88□□□□□ -0.35
CCDC88A-204ENST00000413716 PCDHAC1Q9H158 963 aa12.88□□□□□ -0.35
CCDC88A-204ENST00000413716 RRAGCQ9HB90 399 aa12.88□□□□□ -0.35
CCDC88A-204ENST00000413716 SEC14L2O76054 403 aa12.87□□□□□ -0.35
CCDC88A-204ENST00000413716 RPL7P18124 248 aaKnown RBP12.87□□□□□ -0.35
CCDC88A-204ENST00000413716 KITLGP21583 273 aa12.87□□□□□ -0.35
CCDC88A-204ENST00000413716 PBX3P40426 434 aa12.87□□□□□ -0.35
CCDC88A-204ENST00000413716 PPM1JQ5JR12 505 aa12.87□□□□□ -0.35
CCDC88A-204ENST00000413716 RBM12BQ8IXT5 1001 aaKnown RBP12.87□□□□□ -0.35
CCDC88A-204ENST00000413716 SEMA6DQ8NFY4 1073 aa12.87□□□□□ -0.35
CCDC88A-204ENST00000413716 RSPRY1Q96DX4 576 aa12.87□□□□□ -0.35
CCDC88A-204ENST00000413716 F5H5P2 479 aa12.87□□□□□ -0.35
CCDC88A-204ENST00000413716 H3BSA7 217 aa12.87□□□□□ -0.35
CCDC88A-204ENST00000413716 ZNF182P17025 639 aaPredicted RBP12.87□□□□□ -0.35
CCDC88A-204ENST00000413716 ADGRD1Q6QNK2 874 aa12.87□□□□□ -0.35
CCDC88A-204ENST00000413716 TMEM199Q8N511 208 aa12.87□□□□□ -0.35
CCDC88A-204ENST00000413716 LRCH3Q96II8 777 aa12.87□□□□□ -0.35
CCDC88A-204ENST00000413716 PORCNQ9H237 461 aa12.87□□□□□ -0.35
CCDC88A-204ENST00000413716 HEBP1Q9NRV9 189 aa12.87□□□□□ -0.35
CCDC88A-204ENST00000413716 HPSEQ9Y251 543 aa12.87□□□□□ -0.35
CCDC88A-204ENST00000413716 LSM5Q9Y4Y9 91 aaKnown RBP12.87□□□□□ -0.35
CCDC88A-204ENST00000413716 PCDH17O14917 1159 aa12.87□□□□□ -0.35
CCDC88A-204ENST00000413716 ARPC5O15511 151 aa12.87□□□□□ -0.35
CCDC88A-204ENST00000413716 LRRTM2O43300 516 aa12.87□□□□□ -0.35
CCDC88A-204ENST00000413716 AKR1A1P14550 325 aa12.87□□□□□ -0.35
CCDC88A-204ENST00000413716 EDNRBP24530 442 aa12.87□□□□□ -0.35
CCDC88A-204ENST00000413716 TAS2R30P59541 319 aa12.87□□□□□ -0.35
CCDC88A-204ENST00000413716 PMPCAQ10713 525 aa12.87□□□□□ -0.35
CCDC88A-204ENST00000413716 TAF1AQ15573 450 aaPredicted RBP12.87□□□□□ -0.35
CCDC88A-204ENST00000413716 ZNF610Q8N9Z0 462 aa12.87□□□□□ -0.35
CCDC88A-204ENST00000413716 HBEGFQ99075 208 aa12.87□□□□□ -0.35
CCDC88A-204ENST00000413716 RXFP3Q9NSD7 469 aa12.87□□□□□ -0.35
CCDC88A-204ENST00000413716 LUZP4Q9P127 313 aa12.87□□□□□ -0.35
CCDC88A-204ENST00000413716 INPPL1O15357 1258 aa12.87□□□□□ -0.35
CCDC88A-204ENST00000413716 PORP16435 677 aaPredicted RBP12.87□□□□□ -0.35
CCDC88A-204ENST00000413716 NDUFA6P56556 154 aa12.87□□□□□ -0.35
CCDC88A-204ENST00000413716 SP3Q02447 781 aa12.87□□□□□ -0.35
CCDC88A-204ENST00000413716 NIPA1Q7RTP0 329 aa12.87□□□□□ -0.35
CCDC88A-204ENST00000413716 CEACAM19Q7Z692 300 aa12.87□□□□□ -0.35
CCDC88A-204ENST00000413716 MON1AQ86VX9 555 aa12.87□□□□□ -0.35
CCDC88A-204ENST00000413716 DRAXINQ8NBI3 349 aaPredicted RBP12.87□□□□□ -0.35
CCDC88A-204ENST00000413716 GNPDA2Q8TDQ7 276 aa12.87□□□□□ -0.35
CCDC88A-204ENST00000413716 ACOT11Q8WXI4 607 aaPredicted RBP12.87□□□□□ -0.35
CCDC88A-204ENST00000413716 MRI1Q9BV20 369 aa12.87□□□□□ -0.35
CCDC88A-204ENST00000413716 CNTN3Q9P232 1028 aa12.87□□□□□ -0.35
CCDC88A-204ENST00000413716 VPS29Q9UBQ0 182 aa12.87□□□□□ -0.35
CCDC88A-204ENST00000413716 CLEC4EQ9ULY5 219 aa12.87□□□□□ -0.35
CCDC88A-204ENST00000413716 STBD1O95210 358 aa12.87□□□□□ -0.35
CCDC88A-204ENST00000413716 SERPINA9Q86WD7 417 aa12.87□□□□□ -0.35
CCDC88A-204ENST00000413716 PDSS2Q86YH6 399 aa12.87□□□□□ -0.35
CCDC88A-204ENST00000413716 AGBL3Q8NEM8 1001 aa12.87□□□□□ -0.35
CCDC88A-204ENST00000413716 HSH2DQ96JZ2 352 aa12.87□□□□□ -0.35
CCDC88A-204ENST00000413716 SLC27A5Q9Y2P5 690 aa12.87□□□□□ -0.35
CCDC88A-204ENST00000413716 A8MVM7 634 aa12.87□□□□□ -0.35
CCDC88A-204ENST00000413716 NFATC1O95644 943 aa12.87□□□□□ -0.35
CCDC88A-204ENST00000413716 CHRNB4P30926 498 aa12.87□□□□□ -0.35
CCDC88A-204ENST00000413716 CNTN2Q02246 1040 aa12.87□□□□□ -0.35
CCDC88A-204ENST00000413716 MELKQ14680 651 aa12.87□□□□□ -0.35
CCDC88A-204ENST00000413716 SGIP1Q9BQI5 828 aa12.87□□□□□ -0.35
CCDC88A-204ENST00000413716 ZNF446Q9NWS9 450 aa12.87□□□□□ -0.35
CCDC88A-204ENST00000413716 TCAF1Q9Y4C2 921 aa12.87□□□□□ -0.35
CCDC88A-204ENST00000413716 A6NLC8 198 aa12.87□□□□□ -0.35
CCDC88A-204ENST00000413716 PRAMEF2O60811 474 aa12.87□□□□□ -0.35
CCDC88A-204ENST00000413716 EPHX2P34913 555 aa12.87□□□□□ -0.35
CCDC88A-204ENST00000413716 FAM46BQ96A09 425 aa12.87□□□□□ -0.35
CCDC88A-204ENST00000413716 OR4F21O95013 312 aa12.86□□□□□ -0.35
CCDC88A-204ENST00000413716 SOX14O95416 240 aa12.86□□□□□ -0.35
CCDC88A-204ENST00000413716 GOT2P00505 430 aaKnown RBP12.86□□□□□ -0.35
CCDC88A-204ENST00000413716 RPL23AP62750 156 aaKnown RBP12.86□□□□□ -0.35
CCDC88A-204ENST00000413716 GRB2P62993 217 aaKnown RBP12.86□□□□□ -0.35
CCDC88A-204ENST00000413716 BAGE3Q86Y29 109 aa12.86□□□□□ -0.35
CCDC88A-204ENST00000413716 BAGE2Q86Y30 109 aa12.86□□□□□ -0.35
CCDC88A-204ENST00000413716 TMEM185AQ8NFB2 350 aa12.86□□□□□ -0.35
CCDC88A-204ENST00000413716 OR5AK3PQ8NH89 298 aa12.86□□□□□ -0.35
CCDC88A-204ENST00000413716 THAP4Q8WY91 577 aa12.86□□□□□ -0.35
CCDC88A-204ENST00000413716 TMEM134Q9H6X4 195 aa12.86□□□□□ -0.35
CCDC88A-204ENST00000413716 ZCCHC3Q9NUD5 404 aaKnown RBP12.86□□□□□ -0.35
CCDC88A-204ENST00000413716 AK6Q9Y3D8 172 aaKnown RBP12.86□□□□□ -0.35
CCDC88A-204ENST00000413716 CIDEAO60543 219 aa12.86□□□□□ -0.35
CCDC88A-204ENST00000413716 MRPL3P09001 348 aaKnown RBP12.86□□□□□ -0.35
CCDC88A-204ENST00000413716 EEFSECP57772 596 aaKnown RBP12.86□□□□□ -0.35
CCDC88A-204ENST00000413716 FAM83FQ8NEG4 500 aaPredicted RBP12.86□□□□□ -0.35
CCDC88A-204ENST00000413716 OR2T33Q8NG76 320 aa12.86□□□□□ -0.35
CCDC88A-204ENST00000413716 RBMXL1Q96E39 390 aaKnown RBP12.86□□□□□ -0.35
CCDC88A-204ENST00000413716 KCND1Q9NSA2 647 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms