RNA–Protein interactions for RNA: ENST00000404909.5

RTN4-208, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,102 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-208ENST00000404909 MYOCOSA0A1B0GUC4 107 aa3.51□□□□□ -1.85
RTN4-208ENST00000404909 A0A1W2PRB8 838 aa3.51□□□□□ -1.85
RTN4-208ENST00000404909 PDPK1O15530 556 aa3.51□□□□□ -1.85
RTN4-208ENST00000404909 SCN2BO60939 215 aa3.51□□□□□ -1.85
RTN4-208ENST00000404909 GUCY1B2O75343 617 aa3.51□□□□□ -1.85
RTN4-208ENST00000404909 RDH16O75452 317 aa3.51□□□□□ -1.85
RTN4-208ENST00000404909 ERN1O75460 977 aaKnown RBP3.51□□□□□ -1.85
RTN4-208ENST00000404909 OR2B3O76000 313 aa3.51□□□□□ -1.85
RTN4-208ENST00000404909 CPNE6O95741 557 aa3.51□□□□□ -1.85
RTN4-208ENST00000404909 NPPAP01160 153 aa3.51□□□□□ -1.85
RTN4-208ENST00000404909 C1QCP02747 245 aa3.51□□□□□ -1.85
RTN4-208ENST00000404909 FOLR1P15328 257 aa3.51□□□□□ -1.85
RTN4-208ENST00000404909 CPN2P22792 545 aa3.51□□□□□ -1.85
RTN4-208ENST00000404909 FEN1P39748 380 aaKnown RBP3.51□□□□□ -1.85
RTN4-208ENST00000404909 BUD31P41223 144 aaPredicted RBP3.51□□□□□ -1.85
RTN4-208ENST00000404909 SIM1P81133 766 aaPredicted RBP3.51□□□□□ -1.85
RTN4-208ENST00000404909 RELAQ04206 551 aa3.51□□□□□ -1.85
RTN4-208ENST00000404909 FOXM1Q08050 763 aa3.51□□□□□ -1.85
RTN4-208ENST00000404909 SPEM2Q0P670 501 aa3.51□□□□□ -1.85
RTN4-208ENST00000404909 PDE7AQ13946 482 aa3.51□□□□□ -1.85
RTN4-208ENST00000404909 RUNX2Q13950 521 aa3.51□□□□□ -1.85
RTN4-208ENST00000404909 MPEG1Q2M385 716 aa3.51□□□□□ -1.85
RTN4-208ENST00000404909 ZNF750Q32MQ0 723 aa3.51□□□□□ -1.85
RTN4-208ENST00000404909 PHF19Q5T6S3 580 aa3.51□□□□□ -1.85
RTN4-208ENST00000404909 C8orf82Q6P1X6 216 aaPredicted RBP3.51□□□□□ -1.85
RTN4-208ENST00000404909 WDR74Q6RFH5 385 aaPredicted RBP3.51□□□□□ -1.85
RTN4-208ENST00000404909 ZNF551Q7Z340 670 aaPredicted RBP3.51□□□□□ -1.85
RTN4-208ENST00000404909 NET1Q7Z628 596 aaPredicted RBP3.51□□□□□ -1.85
RTN4-208ENST00000404909 PDSS2Q86YH6 399 aa3.51□□□□□ -1.85
RTN4-208ENST00000404909 OR4N5Q8IXE1 308 aa3.51□□□□□ -1.85
RTN4-208ENST00000404909 MSRB3Q8IXL7 192 aa3.51□□□□□ -1.85
RTN4-208ENST00000404909 ZCCHC7Q8N3Z6 543 aaKnown RBP3.51□□□□□ -1.85
RTN4-208ENST00000404909 FAM181AQ8N9Y4 354 aa3.51□□□□□ -1.85
RTN4-208ENST00000404909 SLC26A7Q8TE54 656 aa3.51□□□□□ -1.85
RTN4-208ENST00000404909 COL26A1Q96A83 441 aa3.51□□□□□ -1.85
RTN4-208ENST00000404909 TMEM125Q96AQ2 219 aa3.51□□□□□ -1.85
RTN4-208ENST00000404909 MAGED4Q96JG8 741 aa3.51□□□□□ -1.85
RTN4-208ENST00000404909 CNDP2Q96KP4 475 aaKnown RBP3.51□□□□□ -1.85
RTN4-208ENST00000404909 BBS4Q96RK4 519 aa3.51□□□□□ -1.85
RTN4-208ENST00000404909 SERINC2Q96SA4 455 aa3.51□□□□□ -1.85
RTN4-208ENST00000404909 YIPF2Q9BWQ6 316 aa3.51□□□□□ -1.85
RTN4-208ENST00000404909 RBCK1Q9BYM8 510 aa3.51□□□□□ -1.85
RTN4-208ENST00000404909 BHLHE41Q9C0J9 482 aaPredicted RBP3.51□□□□□ -1.85
RTN4-208ENST00000404909 ROGDIQ9GZN7 287 aa3.51□□□□□ -1.85
RTN4-208ENST00000404909 PAIP1Q9H074 479 aaKnown RBP3.51□□□□□ -1.85
RTN4-208ENST00000404909 RAB33BQ9H082 229 aa3.51□□□□□ -1.85
RTN4-208ENST00000404909 LRRN3Q9H3W5 708 aa3.51□□□□□ -1.85
RTN4-208ENST00000404909 FAM86C1Q9NVL1 165 aa3.51□□□□□ -1.85
RTN4-208ENST00000404909 HCN3Q9P1Z3 774 aa3.51□□□□□ -1.85
RTN4-208ENST00000404909 ASB4Q9Y574 426 aa3.51□□□□□ -1.85
RTN4-208ENST00000404909 PCDHA9Q9Y5H5 950 aa3.51□□□□□ -1.85
RTN4-208ENST00000404909 TNRC6BQ9UPQ9 1833 aaKnown RBP3.51□□□□□ -1.85
RTN4-208ENST00000404909 CEP250Q9BV73 2442 aa3.51□□□□□ -1.85
RTN4-208ENST00000404909 C15orf38-AP3S2A0A0A6YYH1 394 aa3.51□□□□□ -1.85
RTN4-208ENST00000404909 A0A1W2PS29 197 aa3.51□□□□□ -1.85
RTN4-208ENST00000404909 HYKKA2RU49 373 aa3.51□□□□□ -1.85
RTN4-208ENST00000404909 RNASET2O00584 256 aaKnown RBP3.51□□□□□ -1.85
RTN4-208ENST00000404909 TXNDC9O14530 226 aa3.51□□□□□ -1.85
RTN4-208ENST00000404909 PROM1O43490 865 aa3.51□□□□□ -1.85
RTN4-208ENST00000404909 CDC123O75794 336 aaPredicted RBP3.51□□□□□ -1.85
RTN4-208ENST00000404909 STAMBPO95630 424 aa3.51□□□□□ -1.85
RTN4-208ENST00000404909 RETP07949 1114 aa3.51□□□□□ -1.85
RTN4-208ENST00000404909 NR2F6P10588 404 aa3.51□□□□□ -1.85
RTN4-208ENST00000404909 CKMT1AP12532 417 aa3.51□□□□□ -1.85
RTN4-208ENST00000404909 DRD2P14416 443 aa3.51□□□□□ -1.85
RTN4-208ENST00000404909 NCK1P16333 377 aa3.51□□□□□ -1.85
RTN4-208ENST00000404909 TLX1P31314 330 aaPredicted RBP3.51□□□□□ -1.85
RTN4-208ENST00000404909 GPC1P35052 558 aa3.51□□□□□ -1.85
RTN4-208ENST00000404909 CHI3L1P36222 383 aaPredicted RBP3.51□□□□□ -1.85
RTN4-208ENST00000404909 GRK6P43250 576 aa3.51□□□□□ -1.85
RTN4-208ENST00000404909 TSFMP43897 325 aaKnown RBP3.51□□□□□ -1.85
RTN4-208ENST00000404909 GSK3BP49841 420 aa3.51□□□□□ -1.85
RTN4-208ENST00000404909 NCBP2P52298 156 aaKnown RBP eCLIP3.51□□□□□ -1.85
RTN4-208ENST00000404909 LIM2P55344 173 aa3.51□□□□□ -1.85
RTN4-208ENST00000404909 C21orf58P58505 322 aa3.51□□□□□ -1.85
RTN4-208ENST00000404909 TRA2BP62995 288 aaKnown RBP3.51□□□□□ -1.85
RTN4-208ENST00000404909 SHC2P98077 582 aa3.51□□□□□ -1.85
RTN4-208ENST00000404909 MAT1AQ00266 395 aaKnown RBP3.51□□□□□ -1.85
RTN4-208ENST00000404909 ID2Q02363 134 aa3.51□□□□□ -1.85
RTN4-208ENST00000404909 SPIDRQ14159 915 aa3.51□□□□□ -1.85
RTN4-208ENST00000404909 TRIM25Q14258 630 aaKnown RBP3.51□□□□□ -1.85
RTN4-208ENST00000404909 NR1D2Q14995 579 aa3.51□□□□□ -1.85
RTN4-208ENST00000404909 SPDYE7PQ495Y7 208 aa3.51□□□□□ -1.85
RTN4-208ENST00000404909 TMTC4Q5T4D3 741 aa3.51□□□□□ -1.85
RTN4-208ENST00000404909 LAIR1Q6GTX8 287 aa3.51□□□□□ -1.85
RTN4-208ENST00000404909 TMEM71Q6P5X7 295 aa3.51□□□□□ -1.85
RTN4-208ENST00000404909 ZNF574Q6ZN55 896 aaPredicted RBP3.51□□□□□ -1.85
RTN4-208ENST00000404909 TTLL10Q6ZVT0 673 aa3.51□□□□□ -1.85
RTN4-208ENST00000404909 ARPINQ7Z6K5 226 aa3.51□□□□□ -1.85
RTN4-208ENST00000404909 SPATA24Q86W54 205 aa3.51□□□□□ -1.85
RTN4-208ENST00000404909 GPR135Q8IZ08 494 aa3.51□□□□□ -1.85
RTN4-208ENST00000404909 TTC29Q8NA56 475 aaPredicted RBP3.51□□□□□ -1.85
RTN4-208ENST00000404909 BHLHE22Q8NFJ8 381 aaPredicted RBP3.51□□□□□ -1.85
RTN4-208ENST00000404909 MTERF3Q96E29 417 aa3.51□□□□□ -1.85
RTN4-208ENST00000404909 MMABQ96EY8 250 aaPredicted RBP3.51□□□□□ -1.85
RTN4-208ENST00000404909 CSF3RQ99062 836 aa3.51□□□□□ -1.85
RTN4-208ENST00000404909 TMEM121BQ9BXQ6 578 aaPredicted RBP3.51□□□□□ -1.85
RTN4-208ENST00000404909 SLAMF7Q9NQ25 335 aa3.51□□□□□ -1.85
RTN4-208ENST00000404909 SLC35C2Q9NQQ7 365 aa3.51□□□□□ -1.85
RTN4-208ENST00000404909 ABCD2Q9UBJ2 740 aa3.51□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms