RNA–Protein interactions for RNA: ENST00000398729.1

VCX3A-202, Transcript of variable charge X-linked 3A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VCX3A, Length 808 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3A-202ENST00000398729 CLNKQ7Z7G1 428 aa12.52□□□□□ -0.41
VCX3A-202ENST00000398729 MYLK4Q86YV6 388 aaPredicted RBP12.52□□□□□ -0.41
VCX3A-202ENST00000398729 MCEMP1Q8IX19 187 aa12.52□□□□□ -0.41
VCX3A-202ENST00000398729 CTAGE4Q8IX94 777 aa12.52□□□□□ -0.41
VCX3A-202ENST00000398729 NOA1Q8NC60 698 aaKnown RBP12.52□□□□□ -0.41
VCX3A-202ENST00000398729 APCDD1LQ8NCL9 501 aa12.52□□□□□ -0.41
VCX3A-202ENST00000398729 TMEM52Q8NDY8 209 aa12.52□□□□□ -0.41
VCX3A-202ENST00000398729 OR7G3Q8NG95 312 aa12.52□□□□□ -0.41
VCX3A-202ENST00000398729 CMTM7Q96FZ5 175 aa12.52□□□□□ -0.41
VCX3A-202ENST00000398729 VMP1Q96GC9 406 aa12.52□□□□□ -0.41
VCX3A-202ENST00000398729 CSF3RQ99062 836 aa12.52□□□□□ -0.41
VCX3A-202ENST00000398729 FUT8Q9BYC5 575 aa12.52□□□□□ -0.41
VCX3A-202ENST00000398729 HES7Q9BYE0 225 aa12.52□□□□□ -0.41
VCX3A-202ENST00000398729 VPS11Q9H270 941 aa12.52□□□□□ -0.41
VCX3A-202ENST00000398729 CDC42EP4Q9H3Q1 356 aaKnown RBP12.52□□□□□ -0.41
VCX3A-202ENST00000398729 LYRM4Q9HD34 91 aa12.52□□□□□ -0.41
VCX3A-202ENST00000398729 CLDN16Q9Y5I7 305 aa12.52□□□□□ -0.41
VCX3A-202ENST00000398729 IKBKGQ9Y6K9 419 aa12.52□□□□□ -0.41
VCX3A-202ENST00000398729 TGFBR3LH3BV60 316 aa12.51□□□□□ -0.41
VCX3A-202ENST00000398729 KIF2AO00139 706 aaPredicted RBP12.51□□□□□ -0.41
VCX3A-202ENST00000398729 KLK8O60259 260 aa12.51□□□□□ -0.41
VCX3A-202ENST00000398729 CTNSO60931 367 aa12.51□□□□□ -0.41
VCX3A-202ENST00000398729 SLC25A12O75746 678 aa12.51□□□□□ -0.41
VCX3A-202ENST00000398729 IFNA16P05015 189 aa12.51□□□□□ -0.41
VCX3A-202ENST00000398729 ATP5A1P25705 553 aaKnown RBP12.51□□□□□ -0.41
VCX3A-202ENST00000398729 PPP2R1BP30154 601 aa12.51□□□□□ -0.41
VCX3A-202ENST00000398729 TRHRP34981 398 aaPredicted RBP12.51□□□□□ -0.41
VCX3A-202ENST00000398729 SERPINB9P50453 376 aa12.51□□□□□ -0.41
VCX3A-202ENST00000398729 ALDH6A1Q02252 535 aaKnown RBP12.51□□□□□ -0.41
VCX3A-202ENST00000398729 SRSF11Q05519 484 aaKnown RBP12.51□□□□□ -0.41
VCX3A-202ENST00000398729 MAPKAPK3Q16644 382 aa12.51□□□□□ -0.41
VCX3A-202ENST00000398729 ZNF800Q2TB10 664 aaPredicted RBP eCLIP12.51□□□□□ -0.41
VCX3A-202ENST00000398729 UBAP2Q5T6F2 1119 aaKnown RBP12.51□□□□□ -0.41
VCX3A-202ENST00000398729 ZNF468Q5VIY5 522 aaPredicted RBP12.51□□□□□ -0.41
VCX3A-202ENST00000398729 LIPJQ5W064 366 aa12.51□□□□□ -0.41
VCX3A-202ENST00000398729 ZNF793Q6ZN11 406 aa12.51□□□□□ -0.41
VCX3A-202ENST00000398729 UBE3DQ7Z6J8 389 aa12.51□□□□□ -0.41
VCX3A-202ENST00000398729 FJX1Q86VR8 437 aa12.51□□□□□ -0.41
VCX3A-202ENST00000398729 ARMC10Q8N2F6 343 aa12.51□□□□□ -0.41
VCX3A-202ENST00000398729 TMEM132CQ8N3T6 1108 aa12.51□□□□□ -0.41
VCX3A-202ENST00000398729 ACOT4Q8N9L9 421 aa12.51□□□□□ -0.41
VCX3A-202ENST00000398729 SLC44A1Q8WWI5 657 aa12.51□□□□□ -0.41
VCX3A-202ENST00000398729 TMEM125Q96AQ2 219 aa12.51□□□□□ -0.41
VCX3A-202ENST00000398729 CCDC77Q9BR77 488 aa12.51□□□□□ -0.41
VCX3A-202ENST00000398729 CENPKQ9BS16 269 aa12.51□□□□□ -0.41
VCX3A-202ENST00000398729 TRIM45Q9H8W5 580 aaPredicted RBP12.51□□□□□ -0.41
VCX3A-202ENST00000398729 ACTR8Q9H981 624 aa12.51□□□□□ -0.41
VCX3A-202ENST00000398729 KCMF1Q9P0J7 381 aa12.51□□□□□ -0.41
VCX3A-202ENST00000398729 CPSF2Q9P2I0 782 aaKnown RBP12.51□□□□□ -0.41
VCX3A-202ENST00000398729 FBXW2Q9UKT8 454 aa12.51□□□□□ -0.41
VCX3A-202ENST00000398729 PPIEQ9UNP9 301 aaKnown RBP12.51□□□□□ -0.41
VCX3A-202ENST00000398729 PCDHGA11Q9Y5H2 935 aa12.51□□□□□ -0.41
VCX3A-202ENST00000398729 TNPO3Q9Y5L0 923 aaKnown RBP12.51□□□□□ -0.41
VCX3A-202ENST00000398729 CLCA3PQ9Y6N3 262 aa12.51□□□□□ -0.41
VCX3A-202ENST00000398729 MED13LQ71F56 2210 aa12.5□□□□□ -0.41
VCX3A-202ENST00000398729 TRGV8A0A0C4DH27 118 aa12.5□□□□□ -0.41
VCX3A-202ENST00000398729 ASPDHA6ND91 283 aa12.5□□□□□ -0.41
VCX3A-202ENST00000398729 SAP18O00422 153 aaKnown RBP12.5□□□□□ -0.41
VCX3A-202ENST00000398729 RTCAO00442 366 aaKnown RBP12.5□□□□□ -0.41
VCX3A-202ENST00000398729 UGDHO60701 494 aa12.5□□□□□ -0.41
VCX3A-202ENST00000398729 SH3BGRLO75368 114 aa12.5□□□□□ -0.41
VCX3A-202ENST00000398729 ZFAND5O76080 213 aa12.5□□□□□ -0.41
VCX3A-202ENST00000398729 RBP1P09455 135 aa12.5□□□□□ -0.41
VCX3A-202ENST00000398729 HIST1H1TP22492 207 aaPredicted RBP12.5□□□□□ -0.41
VCX3A-202ENST00000398729 PIK3CBP42338 1070 aa12.5□□□□□ -0.41
VCX3A-202ENST00000398729 SSR2P43308 183 aa12.5□□□□□ -0.41
VCX3A-202ENST00000398729 PIK3CGP48736 1102 aa12.5□□□□□ -0.41
VCX3A-202ENST00000398729 HLCSP50747 726 aa12.5□□□□□ -0.41
VCX3A-202ENST00000398729 RAP1GDS1P52306 607 aa12.5□□□□□ -0.41
VCX3A-202ENST00000398729 PHEXP78562 749 aa12.5□□□□□ -0.41
VCX3A-202ENST00000398729 STX4Q12846 297 aa12.5□□□□□ -0.41
VCX3A-202ENST00000398729 DDX39BQ13838 428 aaKnown RBP12.5□□□□□ -0.41
VCX3A-202ENST00000398729 SERTAD2Q14140 314 aa12.5□□□□□ -0.41
VCX3A-202ENST00000398729 PCBP2Q15366 365 aaKnown RBP eCLIP12.5□□□□□ -0.41
VCX3A-202ENST00000398729 ELAVL1Q15717 326 aaKnown RBP12.5□□□□□ -0.41
VCX3A-202ENST00000398729 KRTCAP3Q53RY4 240 aa12.5□□□□□ -0.41
VCX3A-202ENST00000398729 TECRLQ5HYJ1 363 aa12.5□□□□□ -0.41
VCX3A-202ENST00000398729 DEPDC1Q5TB30 811 aa12.5□□□□□ -0.41
VCX3A-202ENST00000398729 KHDRBS2Q5VWX1 349 aaKnown RBP12.5□□□□□ -0.41
VCX3A-202ENST00000398729 METTL2BQ6P1Q9 378 aaKnown RBP12.5□□□□□ -0.41
VCX3A-202ENST00000398729 PNPLA5Q7Z6Z6 429 aaPredicted RBP12.5□□□□□ -0.41
VCX3A-202ENST00000398729 TMEM156Q8N614 296 aa12.5□□□□□ -0.41
VCX3A-202ENST00000398729 C7orf57Q8NEG2 295 aa12.5□□□□□ -0.41
VCX3A-202ENST00000398729 HUS1BQ8NHY5 278 aa12.5□□□□□ -0.41
VCX3A-202ENST00000398729 THAP3Q8WTV1 239 aaPredicted RBP12.5□□□□□ -0.41
VCX3A-202ENST00000398729 DAZLQ92904 295 aaKnown RBP12.5□□□□□ -0.41
VCX3A-202ENST00000398729 NCLNQ969V3 563 aa12.5□□□□□ -0.41
VCX3A-202ENST00000398729 RELTQ969Z4 430 aa12.5□□□□□ -0.41
VCX3A-202ENST00000398729 REPS1Q96D71 796 aa12.5□□□□□ -0.41
VCX3A-202ENST00000398729 FRMD6Q96NE9 622 aa12.5□□□□□ -0.41
VCX3A-202ENST00000398729 GPR78Q96P69 363 aa12.5□□□□□ -0.41
VCX3A-202ENST00000398729 PAFAH2Q99487 392 aa12.5□□□□□ -0.41
VCX3A-202ENST00000398729 MAPKAP1Q9BPZ7 522 aa12.5□□□□□ -0.41
VCX3A-202ENST00000398729 ALOXE3Q9BYJ1 711 aa12.5□□□□□ -0.41
VCX3A-202ENST00000398729 OR51B5Q9H339 312 aa12.5□□□□□ -0.41
VCX3A-202ENST00000398729 TSC22D4Q9Y3Q8 395 aa12.5□□□□□ -0.41
VCX3A-202ENST00000398729 NIPBLQ6KC79 2804 aaeCLIP12.5□□□□□ -0.41
VCX3A-202ENST00000398729 POC1B-GALNT4F8VUJ3 575 aa12.49□□□□□ -0.41
VCX3A-202ENST00000398729 NME2P1O60361 137 aa12.49□□□□□ -0.41
VCX3A-202ENST00000398729 ITGA10O75578 1167 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms