RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 ZC3H10Q96K80 434 aaKnown RBP17.29■□□□□ 0.36
CCDC88C-203ENST00000389856 CD180Q99467 661 aa17.29■□□□□ 0.36
CCDC88C-203ENST00000389856 CCDC3Q9BQI4 270 aa17.29■□□□□ 0.36
CCDC88C-203ENST00000389856 DUSP23Q9BVJ7 150 aa17.29■□□□□ 0.36
CCDC88C-203ENST00000389856 RAB33BQ9H082 229 aa17.29■□□□□ 0.36
CCDC88C-203ENST00000389856 MAGIXQ9H6Y5 334 aa17.29■□□□□ 0.36
CCDC88C-203ENST00000389856 EHD3Q9NZN3 535 aa17.29■□□□□ 0.36
CCDC88C-203ENST00000389856 NEUROG3Q9Y4Z2 214 aa17.29■□□□□ 0.36
CCDC88C-203ENST00000389856 PCDHB14Q9Y5E9 798 aa17.29■□□□□ 0.36
CCDC88C-203ENST00000389856 SNX11Q9Y5W9 270 aa17.29■□□□□ 0.36
CCDC88C-203ENST00000389856 CACNA1IQ9P0X4 2223 aa17.29■□□□□ 0.36
CCDC88C-203ENST00000389856 TNRC6BQ9UPQ9 1833 aaKnown RBP17.29■□□□□ 0.36
CCDC88C-203ENST00000389856 SNRNP200O75643 2136 aaKnown RBP17.29■□□□□ 0.36
CCDC88C-203ENST00000389856 A0A0J9YVX5 310 aa17.29■□□□□ 0.36
CCDC88C-203ENST00000389856 ELOVL7A1L3X0 281 aa17.29■□□□□ 0.36
CCDC88C-203ENST00000389856 TRIM64CA6NLI5 447 aa17.29■□□□□ 0.36
CCDC88C-203ENST00000389856 RTCAO00442 366 aaKnown RBP17.29■□□□□ 0.36
CCDC88C-203ENST00000389856 PPM1DO15297 605 aa17.29■□□□□ 0.36
CCDC88C-203ENST00000389856 GPR37L1O60883 481 aa17.29■□□□□ 0.36
CCDC88C-203ENST00000389856 SDC3O75056 442 aa17.29■□□□□ 0.36
CCDC88C-203ENST00000389856 CPSF4O95639 269 aaKnown RBP17.29■□□□□ 0.36
CCDC88C-203ENST00000389856 TYRP1P17643 537 aa17.29■□□□□ 0.36
CCDC88C-203ENST00000389856 HIST1H1TP22492 207 aaPredicted RBP17.29■□□□□ 0.36
CCDC88C-203ENST00000389856 CAPGP40121 348 aa17.29■□□□□ 0.36
CCDC88C-203ENST00000389856 WNT3P56703 355 aa17.29■□□□□ 0.36
CCDC88C-203ENST00000389856 MTPNP58546 118 aa17.29■□□□□ 0.36
CCDC88C-203ENST00000389856 EPS8Q12929 822 aa17.29■□□□□ 0.36
CCDC88C-203ENST00000389856 GK3PQ14409 553 aa17.29■□□□□ 0.36
CCDC88C-203ENST00000389856 ZNF528Q3MIS6 628 aa17.29■□□□□ 0.36
CCDC88C-203ENST00000389856 NADK2Q4G0N4 442 aa17.29■□□□□ 0.36
CCDC88C-203ENST00000389856 FBXO42Q6P3S6 717 aa17.29■□□□□ 0.36
CCDC88C-203ENST00000389856 CARFQ8N187 725 aa17.29■□□□□ 0.36
CCDC88C-203ENST00000389856 NUDT8Q8WV74 236 aa17.29■□□□□ 0.36
CCDC88C-203ENST00000389856 TM4SF18Q96CE8 201 aa17.29■□□□□ 0.36
CCDC88C-203ENST00000389856 TM4SF19Q96DZ7 209 aa17.29■□□□□ 0.36
CCDC88C-203ENST00000389856 ZDHHC12Q96GR4 267 aa17.29■□□□□ 0.36
CCDC88C-203ENST00000389856 PHF12Q96QT6 1004 aa17.29■□□□□ 0.36
CCDC88C-203ENST00000389856 OR2A5Q96R48 311 aa17.29■□□□□ 0.36
CCDC88C-203ENST00000389856 SPATA9Q9BWV2 254 aa17.29■□□□□ 0.36
CCDC88C-203ENST00000389856 SORBS1Q9BX66 1292 aaKnown RBP17.29■□□□□ 0.36
CCDC88C-203ENST00000389856 RAD21L1Q9H4I0 556 aa17.29■□□□□ 0.36
CCDC88C-203ENST00000389856 C1GALT1Q9NS00 363 aa17.29■□□□□ 0.36
CCDC88C-203ENST00000389856 PILRAQ9UKJ1 303 aa17.29■□□□□ 0.36
CCDC88C-203ENST00000389856 A0A087WXM4 84 aa17.28■□□□□ 0.36
CCDC88C-203ENST00000389856 TRIM64A6NGJ6 449 aa17.28■□□□□ 0.36
CCDC88C-203ENST00000389856 ENO4A6NNW6 628 aa17.28■□□□□ 0.36
CCDC88C-203ENST00000389856 DLGAP1O14490 977 aa17.28■□□□□ 0.36
CCDC88C-203ENST00000389856 NUDT21O43809 227 aaKnown RBP17.28■□□□□ 0.36
CCDC88C-203ENST00000389856 TPST1O60507 370 aa17.28■□□□□ 0.36
CCDC88C-203ENST00000389856 SCN2BO60939 215 aa17.28■□□□□ 0.36
CCDC88C-203ENST00000389856 ATP5A1P25705 553 aaKnown RBP17.28■□□□□ 0.36
CCDC88C-203ENST00000389856 ALDH3B2P48448 385 aa17.28■□□□□ 0.36
CCDC88C-203ENST00000389856 SKP1P63208 163 aa17.28■□□□□ 0.36
CCDC88C-203ENST00000389856 HYAL2Q12891 473 aa17.28■□□□□ 0.36
CCDC88C-203ENST00000389856 MYBPC3Q14896 1274 aa17.28■□□□□ 0.36
CCDC88C-203ENST00000389856 ZNF621Q6ZSS3 439 aa17.28■□□□□ 0.36
CCDC88C-203ENST00000389856 VN1R4Q7Z5H5 301 aa17.28■□□□□ 0.36
CCDC88C-203ENST00000389856 UBE3DQ7Z6J8 389 aa17.28■□□□□ 0.36
CCDC88C-203ENST00000389856 CALHM3Q86XJ0 350 aa17.28■□□□□ 0.36
CCDC88C-203ENST00000389856 ZNF761Q86XN6 746 aaPredicted RBP17.28■□□□□ 0.36
CCDC88C-203ENST00000389856 SFTPA2Q8IWL1 248 aa17.28■□□□□ 0.36
CCDC88C-203ENST00000389856 MICU2Q8IYU8 434 aa17.28■□□□□ 0.36
CCDC88C-203ENST00000389856 FAM47BQ8NA70 645 aa17.28■□□□□ 0.36
CCDC88C-203ENST00000389856 OR6C4Q8NGE1 309 aa17.28■□□□□ 0.36
CCDC88C-203ENST00000389856 OR4A15Q8NGL6 344 aa17.28■□□□□ 0.36
CCDC88C-203ENST00000389856 ZFP28Q8NHY6 868 aa17.28■□□□□ 0.36
CCDC88C-203ENST00000389856 FAM120BQ96EK7 910 aaKnown RBP17.28■□□□□ 0.36
CCDC88C-203ENST00000389856 TCTN2Q96GX1 697 aa17.28■□□□□ 0.36
CCDC88C-203ENST00000389856 RNF145Q96MT1 663 aa17.28■□□□□ 0.36
CCDC88C-203ENST00000389856 CPPED1Q9BRF8 314 aaPredicted RBP17.28■□□□□ 0.36
CCDC88C-203ENST00000389856 INPP5KQ9BT40 448 aa17.28■□□□□ 0.36
CCDC88C-203ENST00000389856 RBM38Q9H0Z9 239 aaKnown RBP17.28■□□□□ 0.36
CCDC88C-203ENST00000389856 CROCCQ5TZA2 2017 aa17.28■□□□□ 0.36
CCDC88C-203ENST00000389856 GON4LQ3T8J9 2241 aa17.27■□□□□ 0.36
CCDC88C-203ENST00000389856 GPR3P46089 330 aa17.27■□□□□ 0.36
CCDC88C-203ENST00000389856 ALDH9A1P49189 494 aa17.27■□□□□ 0.36
CCDC88C-203ENST00000389856 ABHD18Q0P651 414 aa17.27■□□□□ 0.36
CCDC88C-203ENST00000389856 SELPLGQ14242 412 aa17.27■□□□□ 0.36
CCDC88C-203ENST00000389856 ANKRD26P1Q6NSI1 321 aa17.27■□□□□ 0.36
CCDC88C-203ENST00000389856 NIPAL1Q6NVV3 410 aa17.27■□□□□ 0.36
CCDC88C-203ENST00000389856 ERICH5Q6P6B1 374 aa17.27■□□□□ 0.36
CCDC88C-203ENST00000389856 SVOPLQ8N434 492 aa17.27■□□□□ 0.36
CCDC88C-203ENST00000389856 ACOT4Q8N9L9 421 aa17.27■□□□□ 0.36
CCDC88C-203ENST00000389856 C19orf47Q8N9M1 422 aaKnown RBP17.27■□□□□ 0.36
CCDC88C-203ENST00000389856 GOT1L1Q8NHS2 421 aaPredicted RBP17.27■□□□□ 0.36
CCDC88C-203ENST00000389856 ADAMTS16Q8TE57 1224 aa17.27■□□□□ 0.36
CCDC88C-203ENST00000389856 PIGKQ92643 395 aa17.27■□□□□ 0.36
CCDC88C-203ENST00000389856 AHCYL2Q96HN2 611 aaKnown RBP17.27■□□□□ 0.36
CCDC88C-203ENST00000389856 TRIM8Q9BZR9 551 aa17.27■□□□□ 0.36
CCDC88C-203ENST00000389856 KLHL31Q9H511 634 aa17.27■□□□□ 0.36
CCDC88C-203ENST00000389856 LHX9Q9NQ69 397 aa17.27■□□□□ 0.36
CCDC88C-203ENST00000389856 PRDM7Q9NQW5 492 aa17.27■□□□□ 0.36
CCDC88C-203ENST00000389856 UCKL1Q9NWZ5 548 aa17.27■□□□□ 0.36
CCDC88C-203ENST00000389856 SLC25A37Q9NYZ2 338 aa17.27■□□□□ 0.36
CCDC88C-203ENST00000389856 NLGN3Q9NZ94 848 aa17.27■□□□□ 0.36
CCDC88C-203ENST00000389856 DNAJB9Q9UBS3 223 aa17.27■□□□□ 0.36
CCDC88C-203ENST00000389856 EPHA6Q9UF33 1036 aa17.27■□□□□ 0.36
CCDC88C-203ENST00000389856 PHF11Q9UIL8 331 aa17.27■□□□□ 0.36
CCDC88C-203ENST00000389856 PCDHGB5Q9Y5G0 923 aa17.27■□□□□ 0.36
CCDC88C-203ENST00000389856 GMEB1Q9Y692 573 aa17.27■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms