RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 HCN4Q9Y3Q4 1203 aa8.44□□□□□ -1.06
LIG3-202ENST00000378526 AFDNP55196 1824 aaKnown RBP8.44□□□□□ -1.06
LIG3-202ENST00000378526 SLC12A8A0AV02 714 aa8.44□□□□□ -1.06
LIG3-202ENST00000378526 CAPN15O75808 1086 aa8.44□□□□□ -1.06
LIG3-202ENST00000378526 GAAP10253 952 aa8.44□□□□□ -1.06
LIG3-202ENST00000378526 SPI1P17947 270 aa8.44□□□□□ -1.06
LIG3-202ENST00000378526 MYF6P23409 242 aa8.44□□□□□ -1.06
LIG3-202ENST00000378526 RPS13P62277 151 aaKnown RBP8.44□□□□□ -1.06
LIG3-202ENST00000378526 RTL6Q6ICC9 239 aa8.44□□□□□ -1.06
LIG3-202ENST00000378526 C1orf52Q8N6N3 182 aaKnown RBP8.44□□□□□ -1.06
LIG3-202ENST00000378526 SPHK1Q9NYA1 384 aa8.44□□□□□ -1.06
LIG3-202ENST00000378526 FNIP2Q9P278 1114 aa8.44□□□□□ -1.06
LIG3-202ENST00000378526 TMEM14AQ9Y6G1 99 aa8.44□□□□□ -1.06
LIG3-202ENST00000378526 FER1L6Q2WGJ9 1857 aa8.44□□□□□ -1.06
LIG3-202ENST00000378526 ZNF850A8MQ14 1090 aa8.44□□□□□ -1.06
LIG3-202ENST00000378526 EEF1E1-BLOC1S5C9J1V9 151 aa8.44□□□□□ -1.06
LIG3-202ENST00000378526 SCAMP3O14828 347 aaKnown RBP8.44□□□□□ -1.06
LIG3-202ENST00000378526 LALBAP00709 142 aa8.44□□□□□ -1.06
LIG3-202ENST00000378526 CHRM5P08912 532 aaPredicted RBP8.44□□□□□ -1.06
LIG3-202ENST00000378526 CHRNB4P30926 498 aa8.44□□□□□ -1.06
LIG3-202ENST00000378526 CLCQ05315 142 aa8.44□□□□□ -1.06
LIG3-202ENST00000378526 PPA1Q15181 289 aa8.44□□□□□ -1.06
LIG3-202ENST00000378526 IGDCC4Q8TDY8 1250 aa8.44□□□□□ -1.06
LIG3-202ENST00000378526 MXRA8Q9BRK3 442 aa8.44□□□□□ -1.06
LIG3-202ENST00000378526 ALG12Q9BV10 488 aa8.44□□□□□ -1.06
LIG3-202ENST00000378526 TOLLIPQ9H0E2 274 aa8.44□□□□□ -1.06
LIG3-202ENST00000378526 ABCC13Q9NSE7 274 aa8.44□□□□□ -1.06
LIG3-202ENST00000378526 PIH1D1Q9NWS0 290 aaKnown RBP8.44□□□□□ -1.06
LIG3-202ENST00000378526 COQ4Q9Y3A0 265 aa8.44□□□□□ -1.06
LIG3-202ENST00000378526 PCDHB11Q9Y5F2 797 aa8.44□□□□□ -1.06
LIG3-202ENST00000378526 METTL15A6NJ78 407 aa8.44□□□□□ -1.06
LIG3-202ENST00000378526 HLA-DOBP13765 273 aa8.44□□□□□ -1.06
LIG3-202ENST00000378526 PLA2G7Q13093 441 aa8.44□□□□□ -1.06
LIG3-202ENST00000378526 SPIN4Q56A73 249 aa8.44□□□□□ -1.06
LIG3-202ENST00000378526 TTLQ8NG68 377 aa8.44□□□□□ -1.06
LIG3-202ENST00000378526 OR56A1Q8NGH5 318 aa8.44□□□□□ -1.06
LIG3-202ENST00000378526 SRA1Q9HD15 236 aaKnown RBP8.44□□□□□ -1.06
LIG3-202ENST00000378526 GCM1Q9NP62 436 aa8.44□□□□□ -1.06
LIG3-202ENST00000378526 FZD3Q9NPG1 666 aa8.44□□□□□ -1.06
LIG3-202ENST00000378526 ACP6Q9NPH0 428 aa8.44□□□□□ -1.06
LIG3-202ENST00000378526 PRELID3BQ9Y3B1 194 aa8.44□□□□□ -1.06
LIG3-202ENST00000378526 PXDNLA1KZ92 1463 aa8.44□□□□□ -1.06
LIG3-202ENST00000378526 MED14O60244 1454 aa8.44□□□□□ -1.06
LIG3-202ENST00000378526 A0A1W2PQL4 384 aaPredicted RBP8.44□□□□□ -1.06
LIG3-202ENST00000378526 AGPAT2O15120 278 aa8.44□□□□□ -1.06
LIG3-202ENST00000378526 ARSFP54793 590 aa8.44□□□□□ -1.06
LIG3-202ENST00000378526 RAP1AP62834 184 aa8.44□□□□□ -1.06
LIG3-202ENST00000378526 CBX2Q14781 532 aaPredicted RBP8.44□□□□□ -1.06
LIG3-202ENST00000378526 IGSF11Q5DX21 431 aa8.44□□□□□ -1.06
LIG3-202ENST00000378526 TSTD2Q5T7W7 516 aa8.44□□□□□ -1.06
LIG3-202ENST00000378526 SCIMPQ6UWF3 145 aa8.44□□□□□ -1.06
LIG3-202ENST00000378526 CERS6Q6ZMG9 384 aa8.44□□□□□ -1.06
LIG3-202ENST00000378526 OR2T11Q8NH01 316 aa8.44□□□□□ -1.06
LIG3-202ENST00000378526 SPOCK2Q92563 424 aa8.44□□□□□ -1.06
LIG3-202ENST00000378526 TARS2Q9BW92 718 aaKnown RBP8.44□□□□□ -1.06
LIG3-202ENST00000378526 ZNF701Q9NV72 531 aaPredicted RBP8.44□□□□□ -1.06
LIG3-202ENST00000378526 FBXO10Q9UK96 956 aa8.44□□□□□ -1.06
LIG3-202ENST00000378526 DHDHQ9UQ10 334 aa8.44□□□□□ -1.06
LIG3-202ENST00000378526 CEPT1Q9Y6K0 416 aa8.44□□□□□ -1.06
LIG3-202ENST00000378526 SCN9AQ15858 1988 aa8.44□□□□□ -1.06
LIG3-202ENST00000378526 NPEPPSL1A6NEC2 478 aa8.44□□□□□ -1.06
LIG3-202ENST00000378526 NFKBIEO00221 500 aa8.44□□□□□ -1.06
LIG3-202ENST00000378526 GALNT13Q8IUC8 556 aa8.44□□□□□ -1.06
LIG3-202ENST00000378526 MARC2Q969Z3 335 aa8.44□□□□□ -1.06
LIG3-202ENST00000378526 SEMA4CQ9C0C4 833 aa8.44□□□□□ -1.06
LIG3-202ENST00000378526 C12orf10Q9HB07 376 aa8.44□□□□□ -1.06
LIG3-202ENST00000378526 COPS3Q9UNS2 423 aa8.44□□□□□ -1.06
LIG3-202ENST00000378526 SLC7A11Q9UPY5 501 aa8.44□□□□□ -1.06
LIG3-202ENST00000378526 DICER1Q9UPY3 1922 aaKnown RBP8.44□□□□□ -1.06
LIG3-202ENST00000378526 GPATCH8Q9UKJ3 1502 aaKnown RBP8.44□□□□□ -1.06
LIG3-202ENST00000378526 SPEF2Q9C093 1822 aa8.44□□□□□ -1.06
LIG3-202ENST00000378526 MYO5BQ9ULV0 1848 aa8.44□□□□□ -1.06
LIG3-202ENST00000378526 GJE1A6NN92 205 aa8.44□□□□□ -1.06
LIG3-202ENST00000378526 F6UZH7 168 aa8.44□□□□□ -1.06
LIG3-202ENST00000378526 FANCGO15287 622 aa8.44□□□□□ -1.06
LIG3-202ENST00000378526 TLX2O43763 284 aaPredicted RBP8.44□□□□□ -1.06
LIG3-202ENST00000378526 SLC35G4P0C7Q5 338 aa8.44□□□□□ -1.06
LIG3-202ENST00000378526 LAP3P28838 519 aa8.44□□□□□ -1.06
LIG3-202ENST00000378526 GDI1P31150 447 aa8.44□□□□□ -1.06
LIG3-202ENST00000378526 LEPRP48357 1165 aaKnown RBP8.44□□□□□ -1.06
LIG3-202ENST00000378526 CAMK2DQ13557 499 aa8.44□□□□□ -1.06
LIG3-202ENST00000378526 TIPARPQ7Z3E1 657 aaKnown RBP8.44□□□□□ -1.06
LIG3-202ENST00000378526 KDM8Q8N371 416 aa8.44□□□□□ -1.06
LIG3-202ENST00000378526 SLC45A3Q96JT2 553 aa8.44□□□□□ -1.06
LIG3-202ENST00000378526 SLC41A2Q96JW4 573 aa8.44□□□□□ -1.06
LIG3-202ENST00000378526 TSSK6Q9BXA6 273 aa8.44□□□□□ -1.06
LIG3-202ENST00000378526 RIPK3Q9Y572 518 aa8.44□□□□□ -1.06
LIG3-202ENST00000378526 PUS1Q9Y606 427 aaKnown RBP eCLIP8.44□□□□□ -1.06
LIG3-202ENST00000378526 DIDO1Q9BTC0 2240 aaKnown RBP8.43□□□□□ -1.06
LIG3-202ENST00000378526 A0A1B0GV72 72 aa8.43□□□□□ -1.06
LIG3-202ENST00000378526 MROH6A6NGR9 719 aa8.43□□□□□ -1.06
LIG3-202ENST00000378526 AGPSO00116 658 aa8.43□□□□□ -1.06
LIG3-202ENST00000378526 AKAIN1P0CW23 69 aa8.43□□□□□ -1.06
LIG3-202ENST00000378526 GJA5P36382 358 aa8.43□□□□□ -1.06
LIG3-202ENST00000378526 KCNC1P48547 511 aa8.43□□□□□ -1.06
LIG3-202ENST00000378526 CAV2P51636 162 aa8.43□□□□□ -1.06
LIG3-202ENST00000378526 ZNF74Q16587 644 aa8.43□□□□□ -1.06
LIG3-202ENST00000378526 TATDN3Q17R31 274 aa8.43□□□□□ -1.06
LIG3-202ENST00000378526 SFT2D3Q587I9 215 aa8.43□□□□□ -1.06
LIG3-202ENST00000378526 YIF1BQ5BJH7 314 aa8.43□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms