RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 PRSS50Q9UI38 385 aa4.49□□□□□ -1.69
SCN1A-202ENST00000375405 ROBO2Q9HCK4 1378 aa4.48□□□□□ -1.69
SCN1A-202ENST00000375405 EME2A4GXA9 379 aaPredicted RBP4.48□□□□□ -1.69
SCN1A-202ENST00000375405 GABRR3A8MPY1 467 aa4.48□□□□□ -1.69
SCN1A-202ENST00000375405 SLCO1B7G3V0H7 640 aa4.48□□□□□ -1.69
SCN1A-202ENST00000375405 M0QX08 132 aa4.48□□□□□ -1.69
SCN1A-202ENST00000375405 TUSC2O75896 110 aa4.48□□□□□ -1.69
SCN1A-202ENST00000375405 PIGRP01833 764 aa4.48□□□□□ -1.69
SCN1A-202ENST00000375405 ALDOAP04075 364 aaKnown RBP4.48□□□□□ -1.69
SCN1A-202ENST00000375405 EDN1P05305 212 aa4.48□□□□□ -1.69
SCN1A-202ENST00000375405 ACTR1BP42025 376 aa4.48□□□□□ -1.69
SCN1A-202ENST00000375405 CSN1S1P47710 185 aa4.48□□□□□ -1.69
SCN1A-202ENST00000375405 DLX2Q07687 328 aaPredicted RBP4.48□□□□□ -1.69
SCN1A-202ENST00000375405 BAMBIQ13145 260 aa4.48□□□□□ -1.69
SCN1A-202ENST00000375405 GPM6BQ13491 265 aa4.48□□□□□ -1.69
SCN1A-202ENST00000375405 NPY5RQ15761 445 aa4.48□□□□□ -1.69
SCN1A-202ENST00000375405 FBXO43Q4G163 708 aa4.48□□□□□ -1.69
SCN1A-202ENST00000375405 UNC50Q53HI1 259 aa4.48□□□□□ -1.69
SCN1A-202ENST00000375405 DHRS11Q6UWP2 260 aa4.48□□□□□ -1.69
SCN1A-202ENST00000375405 ZNF705AQ6ZN79 300 aaPredicted RBP4.48□□□□□ -1.69
SCN1A-202ENST00000375405 USP53Q70EK8 1073 aa4.48□□□□□ -1.69
SCN1A-202ENST00000375405 NAA40Q86UY6 237 aa4.48□□□□□ -1.69
SCN1A-202ENST00000375405 CPNE8Q86YQ8 564 aa4.48□□□□□ -1.69
SCN1A-202ENST00000375405 DCUN1D3Q8IWE4 304 aa4.48□□□□□ -1.69
SCN1A-202ENST00000375405 REM2Q8IYK8 340 aaPredicted RBP4.48□□□□□ -1.69
SCN1A-202ENST00000375405 ZNF34Q8IZ26 560 aa4.48□□□□□ -1.69
SCN1A-202ENST00000375405 SCML4Q8N228 414 aa4.48□□□□□ -1.69
SCN1A-202ENST00000375405 ABHD11Q8NFV4 315 aa4.48□□□□□ -1.69
SCN1A-202ENST00000375405 OR9A4Q8NGU2 314 aa4.48□□□□□ -1.69
SCN1A-202ENST00000375405 OR51Q1Q8NH59 317 aa4.48□□□□□ -1.69
SCN1A-202ENST00000375405 UBE2FQ969M7 185 aa4.48□□□□□ -1.69
SCN1A-202ENST00000375405 CAMK1GQ96NX5 476 aa4.48□□□□□ -1.69
SCN1A-202ENST00000375405 FTHL17Q9BXU8 183 aa4.48□□□□□ -1.69
SCN1A-202ENST00000375405 SLC29A3Q9BZD2 475 aa4.48□□□□□ -1.69
SCN1A-202ENST00000375405 HSD3B7Q9H2F3 369 aa4.48□□□□□ -1.69
SCN1A-202ENST00000375405 DPEP3Q9H4B8 488 aa4.48□□□□□ -1.69
SCN1A-202ENST00000375405 LY9Q9HBG7 655 aa4.48□□□□□ -1.69
SCN1A-202ENST00000375405 TRAF6Q9Y4K3 522 aa4.48□□□□□ -1.69
SCN1A-202ENST00000375405 NFS1Q9Y697 457 aa4.48□□□□□ -1.69
SCN1A-202ENST00000375405 OR2AG2A6NM03 316 aa4.48□□□□□ -1.69
SCN1A-202ENST00000375405 SOCS5O75159 536 aa4.48□□□□□ -1.69
SCN1A-202ENST00000375405 CDK2AP2O75956 126 aa4.48□□□□□ -1.69
SCN1A-202ENST00000375405 CD1AP06126 327 aa4.48□□□□□ -1.69
SCN1A-202ENST00000375405 LINC00032P0C843 101 aa4.48□□□□□ -1.69
SCN1A-202ENST00000375405 PCGF2P35227 344 aa4.48□□□□□ -1.69
SCN1A-202ENST00000375405 PKNOX1P55347 436 aa4.48□□□□□ -1.69
SCN1A-202ENST00000375405 GPX6P59796 221 aa4.48□□□□□ -1.69
SCN1A-202ENST00000375405 ADAM17P78536 824 aa4.48□□□□□ -1.69
SCN1A-202ENST00000375405 CATSPEREQ5SY80 951 aa4.48□□□□□ -1.69
SCN1A-202ENST00000375405 SYT6Q5T7P8 510 aaPredicted RBP4.48□□□□□ -1.69
SCN1A-202ENST00000375405 KIAA1161Q6NSJ0 714 aa4.48□□□□□ -1.69
SCN1A-202ENST00000375405 ZNF695Q8IW36 515 aa4.48□□□□□ -1.69
SCN1A-202ENST00000375405 TRAM1L1Q8N609 369 aa4.48□□□□□ -1.69
SCN1A-202ENST00000375405 RBM15BQ8NDT2 890 aaKnown RBP4.48□□□□□ -1.69
SCN1A-202ENST00000375405 BHLHE22Q8NFJ8 381 aaPredicted RBP4.48□□□□□ -1.69
SCN1A-202ENST00000375405 LILRB1Q8NHL6 650 aaPredicted RBP4.48□□□□□ -1.69
SCN1A-202ENST00000375405 UCN3Q969E3 161 aa4.48□□□□□ -1.69
SCN1A-202ENST00000375405 TKTL2Q9H0I9 626 aa4.48□□□□□ -1.69
SCN1A-202ENST00000375405 CLCF1Q9UBD9 225 aa4.48□□□□□ -1.69
SCN1A-202ENST00000375405 ERVW-1Q9UQF0 538 aa4.48□□□□□ -1.69
SCN1A-202ENST00000375405 J3QLW9 94 aa4.48□□□□□ -1.69
SCN1A-202ENST00000375405 GPR37L1O60883 481 aa4.48□□□□□ -1.69
SCN1A-202ENST00000375405 PORP16435 677 aaPredicted RBP4.48□□□□□ -1.69
SCN1A-202ENST00000375405 ZNF19P17023 458 aa4.48□□□□□ -1.69
SCN1A-202ENST00000375405 OGNP20774 298 aaKnown RBP4.48□□□□□ -1.69
SCN1A-202ENST00000375405 GDI1P31150 447 aa4.48□□□□□ -1.69
SCN1A-202ENST00000375405 AKR1C1Q04828 323 aa4.48□□□□□ -1.69
SCN1A-202ENST00000375405 EIPR1Q53HC9 387 aa4.48□□□□□ -1.69
SCN1A-202ENST00000375405 CDCA2Q69YH5 1023 aaPredicted RBP4.48□□□□□ -1.69
SCN1A-202ENST00000375405 LRRN1Q6UXK5 716 aa4.48□□□□□ -1.69
SCN1A-202ENST00000375405 SPNS3Q6ZMD2 512 aa4.48□□□□□ -1.69
SCN1A-202ENST00000375405 ACBD7Q8N6N7 88 aa4.48□□□□□ -1.69
SCN1A-202ENST00000375405 RXFP2Q8WXD0 754 aa4.48□□□□□ -1.69
SCN1A-202ENST00000375405 TNFRSF25Q93038 417 aa4.48□□□□□ -1.69
SCN1A-202ENST00000375405 RNF170Q96K19 258 aa4.48□□□□□ -1.69
SCN1A-202ENST00000375405 TMEM39BQ9GZU3 492 aa4.48□□□□□ -1.69
SCN1A-202ENST00000375405 IL1RAPQ9NPH3 570 aa4.48□□□□□ -1.69
SCN1A-202ENST00000375405 PRDM9Q9NQV7 894 aa4.48□□□□□ -1.69
SCN1A-202ENST00000375405 TMEM51Q9NW97 253 aa4.48□□□□□ -1.69
SCN1A-202ENST00000375405 POMPQ9Y244 141 aa4.48□□□□□ -1.69
SCN1A-202ENST00000375405 URGCP-MRPS24S4R325 110 aa4.48□□□□□ -1.69
SCN1A-202ENST00000375405 AHCTF1Q8WYP5 2266 aa4.48□□□□□ -1.69
SCN1A-202ENST00000375405 WDR27A2RRH5 827 aa4.48□□□□□ -1.69
SCN1A-202ENST00000375405 H3BQF6 201 aa4.48□□□□□ -1.69
SCN1A-202ENST00000375405 SGK494L7N484 410 aa4.48□□□□□ -1.69
SCN1A-202ENST00000375405 TIMM8AO60220 97 aaPredicted RBP4.48□□□□□ -1.69
SCN1A-202ENST00000375405 SNAPINO95295 136 aa4.48□□□□□ -1.69
SCN1A-202ENST00000375405 NADKO95544 446 aaPredicted RBP4.48□□□□□ -1.69
SCN1A-202ENST00000375405 VEGFAP15692 232 aaPredicted RBP4.48□□□□□ -1.69
SCN1A-202ENST00000375405 SLC15A1P46059 708 aa4.48□□□□□ -1.69
SCN1A-202ENST00000375405 FXR1P51114 621 aaKnown RBP eCLIP4.48□□□□□ -1.69
SCN1A-202ENST00000375405 NCBP2P52298 156 aaKnown RBP eCLIP4.48□□□□□ -1.69
SCN1A-202ENST00000375405 ITGA7Q13683 1181 aa4.48□□□□□ -1.69
SCN1A-202ENST00000375405 ZNF791Q3KP31 576 aaPredicted RBP4.48□□□□□ -1.69
SCN1A-202ENST00000375405 CDNFQ49AH0 187 aa4.48□□□□□ -1.69
SCN1A-202ENST00000375405 RFTN2Q52LD8 501 aaPredicted RBP4.48□□□□□ -1.69
SCN1A-202ENST00000375405 RFWD3Q6PCD5 774 aa4.48□□□□□ -1.69
SCN1A-202ENST00000375405 LRIG3Q6UXM1 1119 aa4.48□□□□□ -1.69
SCN1A-202ENST00000375405 USP30Q70CQ3 517 aa4.48□□□□□ -1.69
SCN1A-202ENST00000375405 SLC46A3Q7Z3Q1 461 aa4.48□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms