RNA–Protein interactions for RNA: ENST00000370496.3

COL9A1-204, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL9A1, Length 1,372 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-204ENST00000370496 ACSM2AQ08AH3 577 aa13.95□□□□□ -0.18
COL9A1-204ENST00000370496 GALNT1Q10472 559 aaPredicted RBP13.95□□□□□ -0.18
COL9A1-204ENST00000370496 AIMP2Q13155 320 aaKnown RBP13.95□□□□□ -0.18
COL9A1-204ENST00000370496 LINC00303Q3SY05 128 aa13.95□□□□□ -0.18
COL9A1-204ENST00000370496 SPIN4Q56A73 249 aa13.95□□□□□ -0.18
COL9A1-204ENST00000370496 TTMPQ5BVD1 217 aa13.95□□□□□ -0.18
COL9A1-204ENST00000370496 SPDYAQ5MJ70 313 aa13.95□□□□□ -0.18
COL9A1-204ENST00000370496 CCNYL2Q5T2Q4 361 aa13.95□□□□□ -0.18
COL9A1-204ENST00000370496 KANK2Q63ZY3 851 aa13.95□□□□□ -0.18
COL9A1-204ENST00000370496 ACSM2BQ68CK6 577 aa13.95□□□□□ -0.18
COL9A1-204ENST00000370496 NDUFAF7Q7L592 441 aa13.95□□□□□ -0.18
COL9A1-204ENST00000370496 CPEB2Q7Z5Q1 589 aaKnown RBP13.95□□□□□ -0.18
COL9A1-204ENST00000370496 ANKRD37Q7Z713 158 aa13.95□□□□□ -0.18
COL9A1-204ENST00000370496 CLNKQ7Z7G1 428 aa13.95□□□□□ -0.18
COL9A1-204ENST00000370496 GPR180Q86V85 440 aa13.95□□□□□ -0.18
COL9A1-204ENST00000370496 METTL4Q8N3J2 472 aa13.95□□□□□ -0.18
COL9A1-204ENST00000370496 C1orf52Q8N6N3 182 aaKnown RBP13.95□□□□□ -0.18
COL9A1-204ENST00000370496 TMEM52Q8NDY8 209 aa13.95□□□□□ -0.18
COL9A1-204ENST00000370496 SH3GL2Q99962 352 aa13.95□□□□□ -0.18
COL9A1-204ENST00000370496 DDX31Q9H8H2 851 aaKnown RBP13.95□□□□□ -0.18
COL9A1-204ENST00000370496 ATP13A2Q9NQ11 1180 aa13.95□□□□□ -0.18
COL9A1-204ENST00000370496 ADAM29Q9UKF5 820 aa13.95□□□□□ -0.18
COL9A1-204ENST00000370496 LOC102723996A0A087X1L8 192 aa13.94□□□□□ -0.18
COL9A1-204ENST00000370496 IGHV3-20A0A0C4DH32 117 aa13.94□□□□□ -0.18
COL9A1-204ENST00000370496 A0A1W2PQ72 361 aa13.94□□□□□ -0.18
COL9A1-204ENST00000370496 A6NL46 340 aa13.94□□□□□ -0.18
COL9A1-204ENST00000370496 HMGB1P1B2RPK0 211 aaPredicted RBP13.94□□□□□ -0.18
COL9A1-204ENST00000370496 TMEM233B4DJY2 109 aa13.94□□□□□ -0.18
COL9A1-204ENST00000370496 MASP2O00187 686 aa13.94□□□□□ -0.18
COL9A1-204ENST00000370496 TMPRSS11DO60235 418 aa13.94□□□□□ -0.18
COL9A1-204ENST00000370496 FAM58BPP0C7Q3 252 aa13.94□□□□□ -0.18
COL9A1-204ENST00000370496 CHN1P15882 459 aa13.94□□□□□ -0.18
COL9A1-204ENST00000370496 GRK2P25098 689 aa13.94□□□□□ -0.18
COL9A1-204ENST00000370496 HNRNPFP52597 415 aaKnown RBP13.94□□□□□ -0.18
COL9A1-204ENST00000370496 SLC18A1P54219 525 aa13.94□□□□□ -0.18
COL9A1-204ENST00000370496 HNRNPH2P55795 449 aaKnown RBP13.94□□□□□ -0.18
COL9A1-204ENST00000370496 OR4D2P58180 307 aa13.94□□□□□ -0.18
COL9A1-204ENST00000370496 ACTN3Q08043 901 aaPredicted RBP13.94□□□□□ -0.18
COL9A1-204ENST00000370496 RAPSNQ13702 412 aa13.94□□□□□ -0.18
COL9A1-204ENST00000370496 PCOLCEQ15113 449 aa13.94□□□□□ -0.18
COL9A1-204ENST00000370496 SFT2D3Q587I9 215 aa13.94□□□□□ -0.18
COL9A1-204ENST00000370496 SCUBE1Q8IWY4 988 aa13.94□□□□□ -0.18
COL9A1-204ENST00000370496 DDIASQ8IXT1 998 aa13.94□□□□□ -0.18
COL9A1-204ENST00000370496 GALNT16Q8N428 558 aa13.94□□□□□ -0.18
COL9A1-204ENST00000370496 PLPP5Q8NEB5 264 aa13.94□□□□□ -0.18
COL9A1-204ENST00000370496 TWIST2Q8WVJ9 160 aa13.94□□□□□ -0.18
COL9A1-204ENST00000370496 TUBB6Q9BUF5 446 aa13.94□□□□□ -0.18
COL9A1-204ENST00000370496 ZNF700Q9H0M5 742 aa13.94□□□□□ -0.18
COL9A1-204ENST00000370496 ADNPQ9H2P0 1102 aa13.94□□□□□ -0.18
COL9A1-204ENST00000370496 WDR41Q9HAD4 459 aa13.94□□□□□ -0.18
COL9A1-204ENST00000370496 KCMF1Q9P0J7 381 aa13.94□□□□□ -0.18
COL9A1-204ENST00000370496 ATMQ13315 3056 aa13.93□□□□□ -0.18
COL9A1-204ENST00000370496 CACNA1GO43497 2377 aa13.93□□□□□ -0.18
COL9A1-204ENST00000370496 IGKV3D-11A0A0A0MRZ8 115 aa13.93□□□□□ -0.18
COL9A1-204ENST00000370496 GNG14A0A1W2PPG7 69 aa13.93□□□□□ -0.18
COL9A1-204ENST00000370496 SYNDIG1LA6NDD5 238 aa13.93□□□□□ -0.18
COL9A1-204ENST00000370496 CYR61O00622 381 aa13.93□□□□□ -0.18
COL9A1-204ENST00000370496 ATXN7O15265 892 aaPredicted RBP13.93□□□□□ -0.18
COL9A1-204ENST00000370496 RGS14O43566 566 aa13.93□□□□□ -0.18
COL9A1-204ENST00000370496 PCDH7O60245 1069 aa13.93□□□□□ -0.18
COL9A1-204ENST00000370496 LYPLA1O75608 230 aaPredicted RBP13.93□□□□□ -0.18
COL9A1-204ENST00000370496 SASH3O75995 380 aa13.93□□□□□ -0.18
COL9A1-204ENST00000370496 AIFM1O95831 613 aa13.93□□□□□ -0.18
COL9A1-204ENST00000370496 TPP2P29144 1249 aaPredicted RBP13.93□□□□□ -0.18
COL9A1-204ENST00000370496 ARRB2P32121 409 aa13.93□□□□□ -0.18
COL9A1-204ENST00000370496 WDR4P57081 412 aaKnown RBP13.93□□□□□ -0.18
COL9A1-204ENST00000370496 ABCE1P61221 599 aaKnown RBP13.93□□□□□ -0.18
COL9A1-204ENST00000370496 BTKQ06187 659 aa13.93□□□□□ -0.18
COL9A1-204ENST00000370496 TBL3Q12788 808 aaKnown RBP13.93□□□□□ -0.18
COL9A1-204ENST00000370496 STX4Q12846 297 aa13.93□□□□□ -0.18
COL9A1-204ENST00000370496 LY6DQ14210 128 aa13.93□□□□□ -0.18
COL9A1-204ENST00000370496 PAPD4Q6PIY7 484 aaKnown RBP13.93□□□□□ -0.18
COL9A1-204ENST00000370496 HOMEZQ8IX15 550 aa13.93□□□□□ -0.18
COL9A1-204ENST00000370496 PARP9Q8IXQ6 854 aa13.93□□□□□ -0.18
COL9A1-204ENST00000370496 C9orf43Q8TAL5 461 aaPredicted RBP13.93□□□□□ -0.18
COL9A1-204ENST00000370496 WBP1Q96G27 269 aa13.93□□□□□ -0.18
COL9A1-204ENST00000370496 LPAR4Q99677 370 aa13.93□□□□□ -0.18
COL9A1-204ENST00000370496 SLC25A23Q9BV35 468 aa13.93□□□□□ -0.18
COL9A1-204ENST00000370496 RPF2Q9H7B2 306 aaKnown RBP13.93□□□□□ -0.18
COL9A1-204ENST00000370496 NECTIN3Q9NQS3 549 aa13.93□□□□□ -0.18
COL9A1-204ENST00000370496 GPR83Q9NYM4 423 aa13.93□□□□□ -0.18
COL9A1-204ENST00000370496 TUBD1Q9UJT1 453 aa13.93□□□□□ -0.18
COL9A1-204ENST00000370496 TRAF6Q9Y4K3 522 aa13.93□□□□□ -0.18
COL9A1-204ENST00000370496 ATG4BQ9Y4P1 393 aa13.93□□□□□ -0.18
COL9A1-204ENST00000370496 PTGDR2Q9Y5Y4 395 aa13.93□□□□□ -0.18
COL9A1-204ENST00000370496 TCRBV16S1A1N1A0A5B0 115 aa13.92□□□□□ -0.18
COL9A1-204ENST00000370496 SERTM1A2A2V5 107 aa13.92□□□□□ -0.18
COL9A1-204ENST00000370496 SLC28A1O00337 649 aa13.92□□□□□ -0.18
COL9A1-204ENST00000370496 LDB3O75112 727 aa13.92□□□□□ -0.18
COL9A1-204ENST00000370496 GUCY1B2O75343 617 aa13.92□□□□□ -0.18
COL9A1-204ENST00000370496 SKAP2O75563 359 aaPredicted RBP13.92□□□□□ -0.18
COL9A1-204ENST00000370496 PRKRAO75569 313 aaKnown RBP13.92□□□□□ -0.18
COL9A1-204ENST00000370496 RSL1D1O76021 490 aaKnown RBP13.92□□□□□ -0.18
COL9A1-204ENST00000370496 SFTPCP11686 197 aa13.92□□□□□ -0.18
COL9A1-204ENST00000370496 PPP2R1BP30154 601 aa13.92□□□□□ -0.18
COL9A1-204ENST00000370496 TIA1P31483 386 aaKnown RBP eCLIP13.92□□□□□ -0.18
COL9A1-204ENST00000370496 SLC1A6P48664 564 aa13.92□□□□□ -0.18
COL9A1-204ENST00000370496 AP2B1P63010 937 aa13.92□□□□□ -0.18
COL9A1-204ENST00000370496 STX3Q13277 289 aa13.92□□□□□ -0.18
COL9A1-204ENST00000370496 NR6A1Q15406 480 aa13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms