RNA–Protein interactions for RNA: ENST00000362455.1

RNU4-39P-201, Transcript of RNA, U4 small nuclear 39, pseudogene, humanhuman

BASIC

Gene RNU4-39P, Length 127 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-39P-201ENST00000362455 TMEM206Q9H813 350 aa5.11□□□□□ -1.59
RNU4-39P-201ENST00000362455 TBC1D13Q9NVG8 400 aa5.11□□□□□ -1.59
RNU4-39P-201ENST00000362455 LEF1Q9UJU2 399 aaPredicted RBP5.11□□□□□ -1.59
RNU4-39P-201ENST00000362455 COL1A2P08123 1366 aa5.11□□□□□ -1.59
RNU4-39P-201ENST00000362455 TNFSF12-TNFSF13A0A0A6YY99 330 aa5.1□□□□□ -1.59
RNU4-39P-201ENST00000362455 SMCO2A6NFE2 343 aa5.1□□□□□ -1.59
RNU4-39P-201ENST00000362455 ANKRD61A6NGH8 418 aa5.1□□□□□ -1.59
RNU4-39P-201ENST00000362455 SHISA7A6NL88 538 aa5.1□□□□□ -1.59
RNU4-39P-201ENST00000362455 ZNF263O14978 683 aa5.1□□□□□ -1.59
RNU4-39P-201ENST00000362455 ARPC2O15144 300 aa5.1□□□□□ -1.59
RNU4-39P-201ENST00000362455 SNX3O60493 162 aa5.1□□□□□ -1.59
RNU4-39P-201ENST00000362455 PIGNO95427 931 aa5.1□□□□□ -1.59
RNU4-39P-201ENST00000362455 PLGP00747 810 aaPredicted RBP5.1□□□□□ -1.59
RNU4-39P-201ENST00000362455 SP9P0CG40 484 aa5.1□□□□□ -1.59
RNU4-39P-201ENST00000362455 CA4P22748 312 aa5.1□□□□□ -1.59
RNU4-39P-201ENST00000362455 CACNA1BQ00975 2339 aa5.1□□□□□ -1.59
RNU4-39P-201ENST00000362455 C17orf67Q0P5P2 114 aa5.1□□□□□ -1.59
RNU4-39P-201ENST00000362455 TAF10Q12962 218 aa5.1□□□□□ -1.59
RNU4-39P-201ENST00000362455 NECTIN1Q15223 517 aa5.1□□□□□ -1.59
RNU4-39P-201ENST00000362455 NONOQ15233 471 aaKnown RBP eCLIP5.1□□□□□ -1.59
RNU4-39P-201ENST00000362455 SMU1Q2TAY7 513 aa5.1□□□□□ -1.59
RNU4-39P-201ENST00000362455 GLRA4Q5JXX5 417 aa5.1□□□□□ -1.59
RNU4-39P-201ENST00000362455 KIAA1217Q5T5P2 1943 aa5.1□□□□□ -1.59
RNU4-39P-201ENST00000362455 CASC4Q6P4E1 433 aa5.1□□□□□ -1.59
RNU4-39P-201ENST00000362455 CFAP47Q6ZTR5 3102 aa5.1□□□□□ -1.59
RNU4-39P-201ENST00000362455 C9orf139Q6ZV77 190 aa5.1□□□□□ -1.59
RNU4-39P-201ENST00000362455 RTN4RL2Q86UN3 420 aa5.1□□□□□ -1.59
RNU4-39P-201ENST00000362455 NFE4Q86UQ8 179 aa5.1□□□□□ -1.59
RNU4-39P-201ENST00000362455 UNC45BQ8IWX7 931 aa5.1□□□□□ -1.59
RNU4-39P-201ENST00000362455 C4orf19Q8IY42 314 aa5.1□□□□□ -1.59
RNU4-39P-201ENST00000362455 KMT2EQ8IZD2 1858 aa5.1□□□□□ -1.59
RNU4-39P-201ENST00000362455 APCDD1Q8J025 514 aa5.1□□□□□ -1.59
RNU4-39P-201ENST00000362455 CARNMT1Q8N4J0 409 aa5.1□□□□□ -1.59
RNU4-39P-201ENST00000362455 MAPKAPK5-AS1Q8N8E1 139 aa5.1□□□□□ -1.59
RNU4-39P-201ENST00000362455 OR7G3Q8NG95 312 aa5.1□□□□□ -1.59
RNU4-39P-201ENST00000362455 TCEANC2Q96MN5 208 aa5.1□□□□□ -1.59
RNU4-39P-201ENST00000362455 URM1Q9BTM9 101 aaKnown RBP5.1□□□□□ -1.59
RNU4-39P-201ENST00000362455 SDR39U1Q9NRG7 319 aaPredicted RBP5.1□□□□□ -1.59
RNU4-39P-201ENST00000362455 MARCH5Q9NX47 278 aa5.1□□□□□ -1.59
RNU4-39P-201ENST00000362455 BARHL2Q9NY43 387 aa5.1□□□□□ -1.59
RNU4-39P-201ENST00000362455 TAAR2Q9P1P5 351 aa5.1□□□□□ -1.59
RNU4-39P-201ENST00000362455 BAZ2BQ9UIF8 2168 aaKnown RBP5.1□□□□□ -1.59
RNU4-39P-201ENST00000362455 DUSP12Q9UNI6 340 aa5.1□□□□□ -1.59
RNU4-39P-201ENST00000362455 SNX5Q9Y5X3 404 aa5.1□□□□□ -1.59
RNU4-39P-201ENST00000362455 CACNA1GO43497 2377 aa5.09□□□□□ -1.59
RNU4-39P-201ENST00000362455 IGKV6-21A0A0C4DH24 114 aa5.09□□□□□ -1.59
RNU4-39P-201ENST00000362455 LOC101059948A0A1B0GTJ6 334 aa5.09□□□□□ -1.59
RNU4-39P-201ENST00000362455 A0A1W2PN81 502 aa5.09□□□□□ -1.59
RNU4-39P-201ENST00000362455 CCDC69A6NI79 296 aa5.09□□□□□ -1.59
RNU4-39P-201ENST00000362455 SLC33A1O00400 549 aaPredicted RBP5.09□□□□□ -1.59
RNU4-39P-201ENST00000362455 ACOT8O14734 319 aa5.09□□□□□ -1.59
RNU4-39P-201ENST00000362455 MSH4O15457 936 aa5.09□□□□□ -1.59
RNU4-39P-201ENST00000362455 MAGEB2O15479 319 aa5.09□□□□□ -1.59
RNU4-39P-201ENST00000362455 TEX28O15482 410 aa5.09□□□□□ -1.59
RNU4-39P-201ENST00000362455 FLRT2O43155 660 aa5.09□□□□□ -1.59
RNU4-39P-201ENST00000362455 PRKRAO75569 313 aaKnown RBP5.09□□□□□ -1.59
RNU4-39P-201ENST00000362455 DCNP07585 359 aaKnown RBP5.09□□□□□ -1.59
RNU4-39P-201ENST00000362455 AMD1P17707 334 aa5.09□□□□□ -1.59
RNU4-39P-201ENST00000362455 EPORP19235 508 aa5.09□□□□□ -1.59
RNU4-39P-201ENST00000362455 CDH3P22223 829 aa5.09□□□□□ -1.59
RNU4-39P-201ENST00000362455 CHRNA7P36544 502 aa5.09□□□□□ -1.59
RNU4-39P-201ENST00000362455 NKX2-1P43699 371 aaPredicted RBP5.09□□□□□ -1.59
RNU4-39P-201ENST00000362455 RPL21P46778 160 aaKnown RBP5.09□□□□□ -1.59
RNU4-39P-201ENST00000362455 NAPAP54920 295 aa5.09□□□□□ -1.59
RNU4-39P-201ENST00000362455 KLC1Q07866 573 aa5.09□□□□□ -1.59
RNU4-39P-201ENST00000362455 RASGEF1BQ0VAM2 473 aa5.09□□□□□ -1.59
RNU4-39P-201ENST00000362455 PPP2R5CQ13362 524 aa5.09□□□□□ -1.59
RNU4-39P-201ENST00000362455 RCN2Q14257 317 aa5.09□□□□□ -1.59
RNU4-39P-201ENST00000362455 PHKG1Q16816 387 aa5.09□□□□□ -1.59
RNU4-39P-201ENST00000362455 CASC1Q6TDU7 716 aa5.09□□□□□ -1.59
RNU4-39P-201ENST00000362455 NDUFAF2Q8N183 169 aa5.09□□□□□ -1.59
RNU4-39P-201ENST00000362455 CIARTQ8N365 385 aaPredicted RBP5.09□□□□□ -1.59
RNU4-39P-201ENST00000362455 C10orf53Q8N6V4 93 aa5.09□□□□□ -1.59
RNU4-39P-201ENST00000362455 OR10Q1Q8NGQ4 319 aa5.09□□□□□ -1.59
RNU4-39P-201ENST00000362455 PHLDA1Q8WV24 401 aaPredicted RBP5.09□□□□□ -1.59
RNU4-39P-201ENST00000362455 ALG14Q96F25 216 aa5.09□□□□□ -1.59
RNU4-39P-201ENST00000362455 NSL1Q96IY1 281 aa5.09□□□□□ -1.59
RNU4-39P-201ENST00000362455 CCDC3Q9BQI4 270 aa5.09□□□□□ -1.59
RNU4-39P-201ENST00000362455 RHNO1Q9BSD3 238 aa5.09□□□□□ -1.59
RNU4-39P-201ENST00000362455 MFSD1Q9H3U5 465 aa5.09□□□□□ -1.59
RNU4-39P-201ENST00000362455 CNIH4Q9P003 139 aa5.09□□□□□ -1.59
RNU4-39P-201ENST00000362455 VPS18Q9P253 973 aa5.09□□□□□ -1.59
RNU4-39P-201ENST00000362455 EPS15L1Q9UBC2 864 aa5.09□□□□□ -1.59
RNU4-39P-201ENST00000362455 STUB1Q9UNE7 303 aa5.09□□□□□ -1.59
RNU4-39P-201ENST00000362455 MTF2Q9Y483 593 aaPredicted RBP5.09□□□□□ -1.59
RNU4-39P-201ENST00000362455 CEP295Q9C0D2 2601 aa5.08□□□□□ -1.6
RNU4-39P-201ENST00000362455 USP24Q9UPU5 2620 aa5.08□□□□□ -1.6
RNU4-39P-201ENST00000362455 A0A1B0GUV1 79 aa5.08□□□□□ -1.6
RNU4-39P-201ENST00000362455 TRIM64A6NGJ6 449 aa5.08□□□□□ -1.6
RNU4-39P-201ENST00000362455 TRIM64BA6NI03 449 aa5.08□□□□□ -1.6
RNU4-39P-201ENST00000362455 ANHXE9PGG2 379 aa5.08□□□□□ -1.6
RNU4-39P-201ENST00000362455 BUB3O43684 328 aa5.08□□□□□ -1.6
RNU4-39P-201ENST00000362455 ATP1A1P05023 1023 aaKnown RBP5.08□□□□□ -1.6
RNU4-39P-201ENST00000362455 ITIH1P19827 911 aa5.08□□□□□ -1.6
RNU4-39P-201ENST00000362455 EFNA1P20827 205 aaPredicted RBP5.08□□□□□ -1.6
RNU4-39P-201ENST00000362455 CA8P35219 290 aa5.08□□□□□ -1.6
RNU4-39P-201ENST00000362455 CDX1P47902 265 aaPredicted RBP5.08□□□□□ -1.6
RNU4-39P-201ENST00000362455 VAMP7P51809 220 aa5.08□□□□□ -1.6
RNU4-39P-201ENST00000362455 ASIC1P78348 528 aa5.08□□□□□ -1.6
RNU4-39P-201ENST00000362455 PRKCEQ02156 737 aa5.08□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms