RNA–Protein interactions for RNA: ENST00000355766.5

VPS13A-201, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 753 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-201ENST00000355766 KRT6BP04259 564 aa6.64□□□□□ -1.35
VPS13A-201ENST00000355766 T-ENOLP0DO92 83 aa6.64□□□□□ -1.35
VPS13A-201ENST00000355766 THRAP10827 490 aa6.64□□□□□ -1.35
VPS13A-201ENST00000355766 HSD3B1P14060 373 aa6.64□□□□□ -1.35
VPS13A-201ENST00000355766 TCN2P20062 427 aa6.64□□□□□ -1.35
VPS13A-201ENST00000355766 PRPH2P23942 346 aa6.64□□□□□ -1.35
VPS13A-201ENST00000355766 HSD3B2P26439 372 aa6.64□□□□□ -1.35
VPS13A-201ENST00000355766 HTR1BP28222 390 aa6.64□□□□□ -1.35
VPS13A-201ENST00000355766 SERPINB1P30740 379 aa6.64□□□□□ -1.35
VPS13A-201ENST00000355766 CSTF2P33240 577 aaKnown RBP eCLIP6.64□□□□□ -1.35
VPS13A-201ENST00000355766 TSPAN7P41732 249 aa6.64□□□□□ -1.35
VPS13A-201ENST00000355766 CASP2P42575 452 aa6.64□□□□□ -1.35
VPS13A-201ENST00000355766 KRT6CP48668 564 aa6.64□□□□□ -1.35
VPS13A-201ENST00000355766 PGGT1BP53609 377 aa6.64□□□□□ -1.35
VPS13A-201ENST00000355766 CTSCP53634 463 aa6.64□□□□□ -1.35
VPS13A-201ENST00000355766 STX1BP61266 288 aa6.64□□□□□ -1.35
VPS13A-201ENST00000355766 BTKQ06187 659 aa6.64□□□□□ -1.35
VPS13A-201ENST00000355766 ABHD18Q0P651 414 aa6.64□□□□□ -1.35
VPS13A-201ENST00000355766 MAD2L1Q13257 205 aaPredicted RBP6.64□□□□□ -1.35
VPS13A-201ENST00000355766 RIPK1Q13546 671 aa6.64□□□□□ -1.35
VPS13A-201ENST00000355766 LSM12Q3MHD2 195 aaKnown RBP6.64□□□□□ -1.35
VPS13A-201ENST00000355766 AMZ1Q400G9 498 aa6.64□□□□□ -1.35
VPS13A-201ENST00000355766 SLC9B1Q4ZJI4 515 aa6.64□□□□□ -1.35
VPS13A-201ENST00000355766 DCAF12Q5T6F0 453 aa6.64□□□□□ -1.35
VPS13A-201ENST00000355766 TMEM220Q6QAJ8 160 aa6.64□□□□□ -1.35
VPS13A-201ENST00000355766 ENPP7Q6UWV6 458 aa6.64□□□□□ -1.35
VPS13A-201ENST00000355766 CD300LDQ6UXZ3 194 aa6.64□□□□□ -1.35
VPS13A-201ENST00000355766 WASH2PQ6VEQ5 465 aa6.64□□□□□ -1.35
VPS13A-201ENST00000355766 LARP4Q71RC2 724 aaKnown RBP eCLIP6.64□□□□□ -1.35
VPS13A-201ENST00000355766 RD3Q7Z3Z2 195 aa6.64□□□□□ -1.35
VPS13A-201ENST00000355766 GOLGA7Q7Z5G4 137 aa6.64□□□□□ -1.35
VPS13A-201ENST00000355766 SPATA19Q7Z5L4 167 aa6.64□□□□□ -1.35
VPS13A-201ENST00000355766 C11orf96Q7Z7L8 435 aa6.64□□□□□ -1.35
VPS13A-201ENST00000355766 STK32CQ86UX6 486 aa6.64□□□□□ -1.35
VPS13A-201ENST00000355766 AMZ2Q86W34 360 aa6.64□□□□□ -1.35
VPS13A-201ENST00000355766 TRAPPC5Q8IUR0 188 aa6.64□□□□□ -1.35
VPS13A-201ENST00000355766 ZNF547Q8IVP9 402 aa6.64□□□□□ -1.35
VPS13A-201ENST00000355766 L3MBTL4Q8NA19 623 aa6.64□□□□□ -1.35
VPS13A-201ENST00000355766 FAM46DQ8NEK8 389 aa6.64□□□□□ -1.35
VPS13A-201ENST00000355766 OR56A3Q8NH54 315 aa6.64□□□□□ -1.35
VPS13A-201ENST00000355766 TRPC4APQ8TEL6 797 aa6.64□□□□□ -1.35
VPS13A-201ENST00000355766 TWIST2Q8WVJ9 160 aa6.64□□□□□ -1.35
VPS13A-201ENST00000355766 EXT2Q93063 718 aa6.64□□□□□ -1.35
VPS13A-201ENST00000355766 FAM136AQ96C01 138 aa6.64□□□□□ -1.35
VPS13A-201ENST00000355766 WDR34Q96EX3 536 aa6.64□□□□□ -1.35
VPS13A-201ENST00000355766 WDR92Q96MX6 357 aa6.64□□□□□ -1.35
VPS13A-201ENST00000355766 EGFL8Q99944 293 aa6.64□□□□□ -1.35
VPS13A-201ENST00000355766 TMEM79Q9BSE2 394 aa6.64□□□□□ -1.35
VPS13A-201ENST00000355766 BTBD10Q9BSF8 475 aa6.64□□□□□ -1.35
VPS13A-201ENST00000355766 NUF2Q9BZD4 464 aa6.64□□□□□ -1.35
VPS13A-201ENST00000355766 SPRY4Q9C004 299 aa6.64□□□□□ -1.35
VPS13A-201ENST00000355766 OR2AG1Q9H205 316 aa6.64□□□□□ -1.35
VPS13A-201ENST00000355766 ZBTB26Q9HCK0 441 aa6.64□□□□□ -1.35
VPS13A-201ENST00000355766 WASH6PQ9NQA3 447 aa6.64□□□□□ -1.35
VPS13A-201ENST00000355766 SDR39U1Q9NRG7 319 aaPredicted RBP6.64□□□□□ -1.35
VPS13A-201ENST00000355766 DNAJC11Q9NVH1 559 aa6.64□□□□□ -1.35
VPS13A-201ENST00000355766 SLC39A1Q9NY26 324 aa6.64□□□□□ -1.35
VPS13A-201ENST00000355766 UTP6Q9NYH9 597 aaKnown RBP6.64□□□□□ -1.35
VPS13A-201ENST00000355766 SPATA7Q9P0W8 599 aa6.64□□□□□ -1.35
VPS13A-201ENST00000355766 ATXN10Q9UBB4 475 aa6.64□□□□□ -1.35
VPS13A-201ENST00000355766 MYRFQ9Y2G1 1151 aa6.64□□□□□ -1.35
VPS13A-201ENST00000355766 TMED5Q9Y3A6 229 aa6.64□□□□□ -1.35
VPS13A-201ENST00000355766 ANGPTL3Q9Y5C1 460 aa6.64□□□□□ -1.35
VPS13A-201ENST00000355766 DGKBQ9Y6T7 804 aa6.64□□□□□ -1.35
VPS13A-201ENST00000355766 ITPR3Q14573 2671 aa6.63□□□□□ -1.35
VPS13A-201ENST00000355766 OR2AG2A6NM03 316 aa6.63□□□□□ -1.35
VPS13A-201ENST00000355766 ARHGEF33A8MVX0 844 aa6.63□□□□□ -1.35
VPS13A-201ENST00000355766 H0YHG0 523 aa6.63□□□□□ -1.35
VPS13A-201ENST00000355766 IFRD1O00458 451 aaPredicted RBP6.63□□□□□ -1.35
VPS13A-201ENST00000355766 UBDO15205 165 aa6.63□□□□□ -1.35
VPS13A-201ENST00000355766 TAPBPO15533 448 aa6.63□□□□□ -1.35
VPS13A-201ENST00000355766 B4GAT1O43505 415 aa6.63□□□□□ -1.35
VPS13A-201ENST00000355766 RSL1D1O76021 490 aaKnown RBP6.63□□□□□ -1.35
VPS13A-201ENST00000355766 CLDN9O95484 217 aa6.63□□□□□ -1.35
VPS13A-201ENST00000355766 TNFP01375 233 aa6.63□□□□□ -1.35
VPS13A-201ENST00000355766 ERGP11308 486 aa6.63□□□□□ -1.35
VPS13A-201ENST00000355766 ZNF8P17098 575 aaPredicted RBP6.63□□□□□ -1.35
VPS13A-201ENST00000355766 LBPP18428 481 aa6.63□□□□□ -1.35
VPS13A-201ENST00000355766 GSTM2P28161 218 aa6.63□□□□□ -1.35
VPS13A-201ENST00000355766 ACADLP28330 430 aa6.63□□□□□ -1.35
VPS13A-201ENST00000355766 NDUFS1P28331 727 aa6.63□□□□□ -1.35
VPS13A-201ENST00000355766 EPHA3P29320 983 aa6.63□□□□□ -1.35
VPS13A-201ENST00000355766 CSF2RBP32927 897 aa6.63□□□□□ -1.35
VPS13A-201ENST00000355766 HNF4AP41235 474 aa6.63□□□□□ -1.35
VPS13A-201ENST00000355766 STAT5AP42229 794 aa6.63□□□□□ -1.35
VPS13A-201ENST00000355766 CCNG1P51959 295 aa6.63□□□□□ -1.35
VPS13A-201ENST00000355766 MAZP56270 477 aaKnown RBP6.63□□□□□ -1.35
VPS13A-201ENST00000355766 OR1D5P58170 312 aa6.63□□□□□ -1.35
VPS13A-201ENST00000355766 ERVK-8P63133 956 aa6.63□□□□□ -1.35
VPS13A-201ENST00000355766 STX5Q13190 355 aa6.63□□□□□ -1.35
VPS13A-201ENST00000355766 MRPL49Q13405 166 aaKnown RBP6.63□□□□□ -1.35
VPS13A-201ENST00000355766 NAA25Q14CX7 972 aa6.63□□□□□ -1.35
VPS13A-201ENST00000355766 ZFHX3Q15911 3703 aa6.63□□□□□ -1.35
VPS13A-201ENST00000355766 PDCD2Q16342 344 aaPredicted RBP6.63□□□□□ -1.35
VPS13A-201ENST00000355766 LIPJQ5W064 366 aa6.63□□□□□ -1.35
VPS13A-201ENST00000355766 METRNLQ641Q3 311 aa6.63□□□□□ -1.35
VPS13A-201ENST00000355766 HACD2Q6Y1H2 254 aa6.63□□□□□ -1.35
VPS13A-201ENST00000355766 TIPARPQ7Z3E1 657 aaKnown RBP6.63□□□□□ -1.35
VPS13A-201ENST00000355766 TAF8Q7Z7C8 310 aa6.63□□□□□ -1.35
VPS13A-201ENST00000355766 SYVN1Q86TM6 617 aa6.63□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms