RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 SPATA7Q9P0W8 599 aa20.75■□□□□ 0.91
SHMT1-202ENST00000352886 C5AR2Q9P296 337 aa20.75■□□□□ 0.91
SHMT1-202ENST00000352886 RHCGQ9UBD6 479 aa20.75■□□□□ 0.91
SHMT1-202ENST00000352886 B3GNT3Q9Y2A9 372 aa20.75■□□□□ 0.91
SHMT1-202ENST00000352886 CBFA2T3O75081 653 aa20.75■□□□□ 0.91
SHMT1-202ENST00000352886 GADD45GO95257 159 aa20.75■□□□□ 0.91
SHMT1-202ENST00000352886 RPN2P04844 631 aa20.75■□□□□ 0.91
SHMT1-202ENST00000352886 OCM2P0CE71 109 aa20.75■□□□□ 0.91
SHMT1-202ENST00000352886 OCMP0CE72 109 aaPredicted RBP20.75■□□□□ 0.91
SHMT1-202ENST00000352886 RAB15P59190 212 aa20.75■□□□□ 0.91
SHMT1-202ENST00000352886 WSCD2Q2TBF2 565 aa20.75■□□□□ 0.91
SHMT1-202ENST00000352886 RPS26P11Q5JNZ5 115 aaPredicted RBP20.75■□□□□ 0.91
SHMT1-202ENST00000352886 REEP3Q6NUK4 255 aa20.75■□□□□ 0.91
SHMT1-202ENST00000352886 TNFAIP8L2Q6P589 184 aaPredicted RBP20.75■□□□□ 0.91
SHMT1-202ENST00000352886 DNAJC22Q8N4W6 341 aa20.75■□□□□ 0.91
SHMT1-202ENST00000352886 DYNC2LI1Q8TCX1 351 aa20.75■□□□□ 0.91
SHMT1-202ENST00000352886 GTPBP3Q969Y2 492 aaKnown RBP20.75■□□□□ 0.91
SHMT1-202ENST00000352886 PPP1R14BQ96C90 147 aa20.75■□□□□ 0.91
SHMT1-202ENST00000352886 VMP1Q96GC9 406 aa20.75■□□□□ 0.91
SHMT1-202ENST00000352886 MENTQ9BUN1 341 aa20.75■□□□□ 0.91
SHMT1-202ENST00000352886 ITPAQ9BY32 194 aa20.75■□□□□ 0.91
SHMT1-202ENST00000352886 ALOXE3Q9BYJ1 711 aa20.75■□□□□ 0.91
SHMT1-202ENST00000352886 HMG20AQ9NP66 347 aa20.75■□□□□ 0.91
SHMT1-202ENST00000352886 PLCXD1Q9NUJ7 323 aa20.75■□□□□ 0.91
SHMT1-202ENST00000352886 PNMA8BQ9ULN7 279 aaPredicted RBP20.75■□□□□ 0.91
SHMT1-202ENST00000352886 ENPP4Q9Y6X5 453 aa20.75■□□□□ 0.91
SHMT1-202ENST00000352886 COL4A3Q01955 1670 aa20.74■□□□□ 0.91
SHMT1-202ENST00000352886 CAPN5O15484 640 aaPredicted RBP20.74■□□□□ 0.91
SHMT1-202ENST00000352886 SULT1C4O75897 302 aa20.74■□□□□ 0.91
SHMT1-202ENST00000352886 RECKO95980 971 aa20.74■□□□□ 0.91
SHMT1-202ENST00000352886 HNRNPCP07910 306 aaKnown RBP eCLIP20.74■□□□□ 0.91
SHMT1-202ENST00000352886 CXCR2P25025 360 aa20.74■□□□□ 0.91
SHMT1-202ENST00000352886 SLC19A1P41440 591 aa20.74■□□□□ 0.91
SHMT1-202ENST00000352886 LIMS1P48059 325 aa20.74■□□□□ 0.91
SHMT1-202ENST00000352886 CCR8P51685 355 aa20.74■□□□□ 0.91
SHMT1-202ENST00000352886 NUDT6P53370 316 aa20.74■□□□□ 0.91
SHMT1-202ENST00000352886 ZNF605Q86T29 641 aa20.74■□□□□ 0.91
SHMT1-202ENST00000352886 ZNF554Q86TJ5 538 aa20.74■□□□□ 0.91
SHMT1-202ENST00000352886 SLC30A8Q8IWU4 369 aa20.74■□□□□ 0.91
SHMT1-202ENST00000352886 HORMAD2Q8N7B1 307 aa20.74■□□□□ 0.91
SHMT1-202ENST00000352886 PHOSPHO2Q8TCD6 241 aa20.74■□□□□ 0.91
SHMT1-202ENST00000352886 PHF10Q8WUB8 498 aaKnown RBP20.74■□□□□ 0.91
SHMT1-202ENST00000352886 PDXPQ96GD0 296 aa20.74■□□□□ 0.91
SHMT1-202ENST00000352886 AKIP1Q9NQ31 210 aa20.74■□□□□ 0.91
SHMT1-202ENST00000352886 WASH6PQ9NQA3 447 aa20.74■□□□□ 0.91
SHMT1-202ENST00000352886 ZNF226Q9NYT6 803 aa20.74■□□□□ 0.91
SHMT1-202ENST00000352886 HCN4Q9Y3Q4 1203 aa20.74■□□□□ 0.91
SHMT1-202ENST00000352886 CLCA1A8K7I4 914 aa20.74■□□□□ 0.91
SHMT1-202ENST00000352886 A8MVJ9 347 aa20.74■□□□□ 0.91
SHMT1-202ENST00000352886 PDPK1O15530 556 aa20.74■□□□□ 0.91
SHMT1-202ENST00000352886 BCHEP06276 602 aa20.74■□□□□ 0.91
SHMT1-202ENST00000352886 HEPACAMQ14CZ8 416 aa20.74■□□□□ 0.91
SHMT1-202ENST00000352886 SYT16Q17RD7 645 aa20.74■□□□□ 0.91
SHMT1-202ENST00000352886 RGS21Q2M5E4 152 aa20.74■□□□□ 0.91
SHMT1-202ENST00000352886 MLIPQ5VWP3 458 aa20.74■□□□□ 0.91
SHMT1-202ENST00000352886 TMEM236Q5W0B7 351 aa20.74■□□□□ 0.91
SHMT1-202ENST00000352886 SAXO2Q658L1 398 aa20.74■□□□□ 0.91
SHMT1-202ENST00000352886 PAGE2Q7Z2X7 111 aa20.74■□□□□ 0.91
SHMT1-202ENST00000352886 ADCK1Q86TW2 530 aa20.74■□□□□ 0.91
SHMT1-202ENST00000352886 SLC44A2Q8IWA5 706 aaPredicted RBP20.74■□□□□ 0.91
SHMT1-202ENST00000352886 CHPT1Q8WUD6 406 aa20.74■□□□□ 0.91
SHMT1-202ENST00000352886 OR5P2Q8WZ92 322 aa20.74■□□□□ 0.91
SHMT1-202ENST00000352886 FCGR1BQ92637 280 aa20.74■□□□□ 0.91
SHMT1-202ENST00000352886 GGHQ92820 318 aa20.74■□□□□ 0.91
SHMT1-202ENST00000352886 MYDGFQ969H8 173 aa20.74■□□□□ 0.91
SHMT1-202ENST00000352886 LGALS12Q96DT0 336 aa20.74■□□□□ 0.91
SHMT1-202ENST00000352886 NEURL3Q96EH8 262 aa20.74■□□□□ 0.91
SHMT1-202ENST00000352886 HCN2Q9UL51 889 aa20.74■□□□□ 0.91
SHMT1-202ENST00000352886 PCDHGA4Q9Y5G9 962 aa20.74■□□□□ 0.91
SHMT1-202ENST00000352886 PMF1-BGLAPU3KQ54 211 aa20.74■□□□□ 0.91
SHMT1-202ENST00000352886 CCNB2O95067 398 aa20.73■□□□□ 0.91
SHMT1-202ENST00000352886 PCDH8O95206 1070 aa20.73■□□□□ 0.91
SHMT1-202ENST00000352886 IFNW1P05000 195 aa20.73■□□□□ 0.91
SHMT1-202ENST00000352886 RHCEP18577 417 aa20.73■□□□□ 0.91
SHMT1-202ENST00000352886 DRD3P35462 400 aa20.73■□□□□ 0.91
SHMT1-202ENST00000352886 TGFBR1P36897 503 aa20.73■□□□□ 0.91
SHMT1-202ENST00000352886 SERPINB10P48595 397 aa20.73■□□□□ 0.91
SHMT1-202ENST00000352886 CLCNKAP51800 687 aa20.73■□□□□ 0.91
SHMT1-202ENST00000352886 HMGA2P52926 109 aa20.73■□□□□ 0.91
SHMT1-202ENST00000352886 HSPB3Q12988 150 aa20.73■□□□□ 0.91
SHMT1-202ENST00000352886 SLC38A5Q8WUX1 472 aa20.73■□□□□ 0.91
SHMT1-202ENST00000352886 SMPDL3AQ92484 453 aa20.73■□□□□ 0.91
SHMT1-202ENST00000352886 MYO10Q9HD67 2058 aa20.73■□□□□ 0.91
SHMT1-202ENST00000352886 A0A1W2PPV9 198 aa20.73■□□□□ 0.91
SHMT1-202ENST00000352886 CLDN24A6NM45 220 aa20.73■□□□□ 0.91
SHMT1-202ENST00000352886 C5orf58C9J3I9 102 aa20.73■□□□□ 0.91
SHMT1-202ENST00000352886 M0R129 80 aa20.73■□□□□ 0.91
SHMT1-202ENST00000352886 SLC35G4P0C7Q5 338 aa20.73■□□□□ 0.91
SHMT1-202ENST00000352886 HSD17B2P37059 387 aa20.73■□□□□ 0.91
SHMT1-202ENST00000352886 LIPAP38571 399 aa20.73■□□□□ 0.91
SHMT1-202ENST00000352886 OPRD1P41143 372 aa20.73■□□□□ 0.91
SHMT1-202ENST00000352886 TBCEQ15813 527 aaPredicted RBP20.73■□□□□ 0.91
SHMT1-202ENST00000352886 FBXO46Q6PJ61 603 aaPredicted RBP20.73■□□□□ 0.91
SHMT1-202ENST00000352886 GET4Q7L5D6 327 aaPredicted RBP20.73■□□□□ 0.91
SHMT1-202ENST00000352886 DEPDC4Q8N2C3 294 aa20.73■□□□□ 0.91
SHMT1-202ENST00000352886 HERVK_113Q902F9 699 aa20.73■□□□□ 0.91
SHMT1-202ENST00000352886 WDR12Q9GZL7 423 aaKnown RBP20.73■□□□□ 0.91
SHMT1-202ENST00000352886 IMPAD1Q9NX62 359 aa20.73■□□□□ 0.91
SHMT1-202ENST00000352886 GPR83Q9NYM4 423 aa20.73■□□□□ 0.91
SHMT1-202ENST00000352886 CDK1P06493 297 aa20.72■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms