RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 SCN3BQ9NY72 215 aa12.23□□□□□ -0.45
CLK3-201ENST00000345005 OR6C2Q9NZP2 312 aa12.23□□□□□ -0.45
CLK3-201ENST00000345005 VAPAQ9P0L0 249 aa12.23□□□□□ -0.45
CLK3-201ENST00000345005 NIPSNAP3AQ9UFN0 247 aaPredicted RBP12.23□□□□□ -0.45
CLK3-201ENST00000345005 ZBTB32Q9Y2Y4 487 aaPredicted RBP12.23□□□□□ -0.45
CLK3-201ENST00000345005 CUL9Q8IWT3 2517 aa12.23□□□□□ -0.45
CLK3-201ENST00000345005 SPTY2D1-AS1A0A0U1RR47 76 aa12.23□□□□□ -0.45
CLK3-201ENST00000345005 SCAMP2O15127 329 aaKnown RBP12.23□□□□□ -0.45
CLK3-201ENST00000345005 PRICKLE3O43900 615 aaPredicted RBP12.23□□□□□ -0.45
CLK3-201ENST00000345005 DFNA5O60443 496 aa12.23□□□□□ -0.45
CLK3-201ENST00000345005 FOXD2O60548 495 aaPredicted RBP12.23□□□□□ -0.45
CLK3-201ENST00000345005 SEMA3DO95025 777 aa12.23□□□□□ -0.45
CLK3-201ENST00000345005 GABARAPO95166 117 aa12.23□□□□□ -0.45
CLK3-201ENST00000345005 RPL3P39023 403 aaKnown RBP12.23□□□□□ -0.45
CLK3-201ENST00000345005 YAP1P46937 504 aaKnown RBP12.23□□□□□ -0.45
CLK3-201ENST00000345005 EIF2B2P49770 351 aaKnown RBP12.23□□□□□ -0.45
CLK3-201ENST00000345005 CSNK1G2P78368 415 aa12.23□□□□□ -0.45
CLK3-201ENST00000345005 PPP2R2BQ00005 443 aa12.23□□□□□ -0.45
CLK3-201ENST00000345005 ZNF763Q0D2J5 394 aa12.23□□□□□ -0.45
CLK3-201ENST00000345005 UGT8Q16880 541 aa12.23□□□□□ -0.45
CLK3-201ENST00000345005 ZIK1Q3SY52 487 aaPredicted RBP12.23□□□□□ -0.45
CLK3-201ENST00000345005 RUNDC3AQ59EK9 446 aa12.23□□□□□ -0.45
CLK3-201ENST00000345005 TUBA3EQ6PEY2 450 aa12.23□□□□□ -0.45
CLK3-201ENST00000345005 ARMCX6Q7L4S7 300 aa12.23□□□□□ -0.45
CLK3-201ENST00000345005 VN1R5Q7Z5H4 357 aa12.23□□□□□ -0.45
CLK3-201ENST00000345005 DCP2Q8IU60 420 aaKnown RBP12.23□□□□□ -0.45
CLK3-201ENST00000345005 GJD3Q8N144 294 aa12.23□□□□□ -0.45
CLK3-201ENST00000345005 SIX5Q8N196 739 aa12.23□□□□□ -0.45
CLK3-201ENST00000345005 TMEM132CQ8N3T6 1108 aa12.23□□□□□ -0.45
CLK3-201ENST00000345005 DTWD1Q8N5C7 304 aa12.23□□□□□ -0.45
CLK3-201ENST00000345005 TTLQ8NG68 377 aa12.23□□□□□ -0.45
CLK3-201ENST00000345005 OR2T12Q8NG77 320 aa12.23□□□□□ -0.45
CLK3-201ENST00000345005 CCL4L1Q8NHW4 92 aa12.23□□□□□ -0.45
CLK3-201ENST00000345005 CDC26Q8NHZ8 85 aa12.23□□□□□ -0.45
CLK3-201ENST00000345005 GPBAR1Q8TDU6 330 aa12.23□□□□□ -0.45
CLK3-201ENST00000345005 PHF10Q8WUB8 498 aaKnown RBP12.23□□□□□ -0.45
CLK3-201ENST00000345005 FBLIM1Q8WUP2 373 aa12.23□□□□□ -0.45
CLK3-201ENST00000345005 ZFPM2Q8WW38 1151 aa12.23□□□□□ -0.45
CLK3-201ENST00000345005 LCN9Q8WX39 176 aa12.23□□□□□ -0.45
CLK3-201ENST00000345005 RORBQ92753 470 aa12.23□□□□□ -0.45
CLK3-201ENST00000345005 TRIM8Q9BZR9 551 aa12.23□□□□□ -0.45
CLK3-201ENST00000345005 FOXQ1Q9C009 403 aa12.23□□□□□ -0.45
CLK3-201ENST00000345005 MRPS30Q9NP92 439 aaKnown RBP12.23□□□□□ -0.45
CLK3-201ENST00000345005 AKIP1Q9NQ31 210 aa12.23□□□□□ -0.45
CLK3-201ENST00000345005 SERHLQ9NQF3 203 aa12.23□□□□□ -0.45
CLK3-201ENST00000345005 TMEM184CQ9NVA4 438 aa12.23□□□□□ -0.45
CLK3-201ENST00000345005 ZNF624Q9P2J8 865 aaPredicted RBP12.23□□□□□ -0.45
CLK3-201ENST00000345005 PNMA8BQ9ULN7 279 aaPredicted RBP12.23□□□□□ -0.45
CLK3-201ENST00000345005 TRBV5-3A0A0A0MS03 114 aa12.22□□□□□ -0.45
CLK3-201ENST00000345005 LOC100130705A0A1B0GUX0 176 aa12.22□□□□□ -0.45
CLK3-201ENST00000345005 A6NCN8 305 aa12.22□□□□□ -0.45
CLK3-201ENST00000345005 SAGE2PA6NJ88 616 aa12.22□□□□□ -0.45
CLK3-201ENST00000345005 J3QRK9 145 aa12.22□□□□□ -0.45
CLK3-201ENST00000345005 OR1F1O43749 312 aa12.22□□□□□ -0.45
CLK3-201ENST00000345005 EML2O95834 649 aa12.22□□□□□ -0.45
CLK3-201ENST00000345005 THEGLP0DJG4 465 aa12.22□□□□□ -0.45
CLK3-201ENST00000345005 ARHGDIAP52565 204 aa12.22□□□□□ -0.45
CLK3-201ENST00000345005 ZP2Q05996 745 aa12.22□□□□□ -0.45
CLK3-201ENST00000345005 LRRC74AQ0VAA2 488 aa12.22□□□□□ -0.45
CLK3-201ENST00000345005 KRR1Q13601 381 aaKnown RBP12.22□□□□□ -0.45
CLK3-201ENST00000345005 SF1Q15637 639 aaKnown RBP12.22□□□□□ -0.45
CLK3-201ENST00000345005 DUOXA1Q1HG43 343 aa12.22□□□□□ -0.45
CLK3-201ENST00000345005 CPTPQ5TA50 214 aa12.22□□□□□ -0.45
CLK3-201ENST00000345005 ANXA8L1Q5VT79 327 aa12.22□□□□□ -0.45
CLK3-201ENST00000345005 ZNF691Q5VV52 312 aa12.22□□□□□ -0.45
CLK3-201ENST00000345005 OR4F3Q6IEY1 312 aa12.22□□□□□ -0.45
CLK3-201ENST00000345005 PRSS48Q7RTY5 328 aa12.22□□□□□ -0.45
CLK3-201ENST00000345005 CAMKMTQ7Z624 323 aa12.22□□□□□ -0.45
CLK3-201ENST00000345005 AMIGO1Q86WK6 493 aa12.22□□□□□ -0.45
CLK3-201ENST00000345005 NRROSQ86YC3 692 aa12.22□□□□□ -0.45
CLK3-201ENST00000345005 LACC1Q8IV20 430 aa12.22□□□□□ -0.45
CLK3-201ENST00000345005 SLC22A18ASQ8N1D0 253 aa12.22□□□□□ -0.45
CLK3-201ENST00000345005 TBC1D19Q8N5T2 526 aa12.22□□□□□ -0.45
CLK3-201ENST00000345005 RLN3Q8WXF3 142 aa12.22□□□□□ -0.45
CLK3-201ENST00000345005 NELL1Q92832 810 aa12.22□□□□□ -0.45
CLK3-201ENST00000345005 SLC47A1Q96FL8 570 aa12.22□□□□□ -0.45
CLK3-201ENST00000345005 KLHDC7BQ96G42 594 aa12.22□□□□□ -0.45
CLK3-201ENST00000345005 THUMPD3Q9BV44 507 aaKnown RBP12.22□□□□□ -0.45
CLK3-201ENST00000345005 MS4A8Q9BY19 250 aa12.22□□□□□ -0.45
CLK3-201ENST00000345005 GSDMCQ9BYG8 508 aa12.22□□□□□ -0.45
CLK3-201ENST00000345005 TPSD1Q9BZJ3 242 aa12.22□□□□□ -0.45
CLK3-201ENST00000345005 PCED1AQ9H1Q7 454 aa12.22□□□□□ -0.45
CLK3-201ENST00000345005 GPR27Q9NS67 375 aa12.22□□□□□ -0.45
CLK3-201ENST00000345005 WBP11Q9Y2W2 641 aaKnown RBP12.22□□□□□ -0.45
CLK3-201ENST00000345005 PCDHB14Q9Y5E9 798 aa12.22□□□□□ -0.45
CLK3-201ENST00000345005 PCDHGA8Q9Y5G5 932 aa12.22□□□□□ -0.45
CLK3-201ENST00000345005 CORINQ9Y5Q5 1042 aa12.22□□□□□ -0.45
CLK3-201ENST00000345005 PRAMEF33A0A0G2JMD5 474 aa12.21□□□□□ -0.45
CLK3-201ENST00000345005 TRBC2A0A5B9 178 aa12.21□□□□□ -0.45
CLK3-201ENST00000345005 ELOVL7A1L3X0 281 aa12.21□□□□□ -0.45
CLK3-201ENST00000345005 GABRR3A8MPY1 467 aa12.21□□□□□ -0.45
CLK3-201ENST00000345005 RFXANKO14593 260 aa12.21□□□□□ -0.45
CLK3-201ENST00000345005 CMPK1P30085 196 aa12.21□□□□□ -0.45
CLK3-201ENST00000345005 OPRL1P41146 370 aa12.21□□□□□ -0.45
CLK3-201ENST00000345005 SLC19A1P41440 591 aa12.21□□□□□ -0.45
CLK3-201ENST00000345005 BLKP51451 505 aa12.21□□□□□ -0.45
CLK3-201ENST00000345005 MTPNP58546 118 aa12.21□□□□□ -0.45
CLK3-201ENST00000345005 ISL1P61371 349 aa12.21□□□□□ -0.45
CLK3-201ENST00000345005 CYP4F3Q08477 520 aa12.21□□□□□ -0.45
CLK3-201ENST00000345005 HKDC1Q2TB90 917 aa12.21□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms