RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 AKR1D1P51857 326 aa11.42□□□□□ -0.58
USP1-201ENST00000339950 NCBP2P52298 156 aaKnown RBP eCLIP11.42□□□□□ -0.58
USP1-201ENST00000339950 OR2B6P58173 313 aa11.42□□□□□ -0.58
USP1-201ENST00000339950 OLR1P78380 273 aa11.42□□□□□ -0.58
USP1-201ENST00000339950 ZNF763Q0D2J5 394 aa11.42□□□□□ -0.58
USP1-201ENST00000339950 KRR1Q13601 381 aaKnown RBP11.42□□□□□ -0.58
USP1-201ENST00000339950 C10orf62Q5T681 223 aaPredicted RBP11.42□□□□□ -0.58
USP1-201ENST00000339950 TBC1D3GQ6DHY5 549 aa11.42□□□□□ -0.58
USP1-201ENST00000339950 DESI1Q6ICB0 168 aa11.42□□□□□ -0.58
USP1-201ENST00000339950 TBC1D3CQ6IPX1 549 aa11.42□□□□□ -0.58
USP1-201ENST00000339950 ERICH5Q6P6B1 374 aa11.42□□□□□ -0.58
USP1-201ENST00000339950 SHQ1Q6PI26 577 aaKnown RBP11.42□□□□□ -0.58
USP1-201ENST00000339950 MACC1Q6ZN28 852 aa11.42□□□□□ -0.58
USP1-201ENST00000339950 C16orf62Q7Z3J2 963 aa11.42□□□□□ -0.58
USP1-201ENST00000339950 TBC1D3Q8IZP1 549 aaPredicted RBP11.42□□□□□ -0.58
USP1-201ENST00000339950 CADM3Q8N126 398 aa11.42□□□□□ -0.58
USP1-201ENST00000339950 KBTBD8Q8NFY9 601 aa11.42□□□□□ -0.58
USP1-201ENST00000339950 BBS10Q8TAM1 723 aa11.42□□□□□ -0.58
USP1-201ENST00000339950 ZSWIM3Q96MP5 696 aa11.42□□□□□ -0.58
USP1-201ENST00000339950 NTMT1Q9BV86 223 aa11.42□□□□□ -0.58
USP1-201ENST00000339950 SLC6A16Q9GZN6 736 aa11.42□□□□□ -0.58
USP1-201ENST00000339950 NEK6Q9HC98 313 aa11.42□□□□□ -0.58
USP1-201ENST00000339950 STMN3Q9NZ72 180 aa11.42□□□□□ -0.58
USP1-201ENST00000339950 KNTC1P50748 2209 aa11.42□□□□□ -0.58
USP1-201ENST00000339950 VIPR1P32241 457 aa11.42□□□□□ -0.58
USP1-201ENST00000339950 ZFP36L2P47974 494 aaKnown RBP11.42□□□□□ -0.58
USP1-201ENST00000339950 XKP51811 444 aa11.42□□□□□ -0.58
USP1-201ENST00000339950 CSNK2BP67870 215 aa11.42□□□□□ -0.58
USP1-201ENST00000339950 NNATQ16517 81 aa11.42□□□□□ -0.58
USP1-201ENST00000339950 INAVAQ3KP66 663 aa11.42□□□□□ -0.58
USP1-201ENST00000339950 FCRLBQ6BAA4 426 aa11.42□□□□□ -0.58
USP1-201ENST00000339950 MTSS1LQ765P7 747 aa11.42□□□□□ -0.58
USP1-201ENST00000339950 ENTHD1Q8IYW4 607 aa11.42□□□□□ -0.58
USP1-201ENST00000339950 GOLM1Q8NBJ4 401 aa11.42□□□□□ -0.58
USP1-201ENST00000339950 GATAD2BQ8WXI9 593 aa11.42□□□□□ -0.58
USP1-201ENST00000339950 FCRL4Q96PJ5 515 aa11.42□□□□□ -0.58
USP1-201ENST00000339950 ASPNQ9BXN1 380 aa11.42□□□□□ -0.58
USP1-201ENST00000339950 AHSPQ9NZD4 102 aa11.42□□□□□ -0.58
USP1-201ENST00000339950 CNIH4Q9P003 139 aa11.42□□□□□ -0.58
USP1-201ENST00000339950 DPP7Q9UHL4 492 aa11.42□□□□□ -0.58
USP1-201ENST00000339950 TMEFF2Q9UIK5 374 aaPredicted RBP11.42□□□□□ -0.58
USP1-201ENST00000339950 ANHXE9PGG2 379 aa11.41□□□□□ -0.58
USP1-201ENST00000339950 TLR4O00206 839 aa11.41□□□□□ -0.58
USP1-201ENST00000339950 SCAMP2O15127 329 aaKnown RBP11.41□□□□□ -0.58
USP1-201ENST00000339950 PRMT3O60678 531 aa11.41□□□□□ -0.58
USP1-201ENST00000339950 NTN1O95631 604 aa11.41□□□□□ -0.58
USP1-201ENST00000339950 NPPAP01160 153 aa11.41□□□□□ -0.58
USP1-201ENST00000339950 PSMA1P25786 263 aaKnown RBP11.41□□□□□ -0.58
USP1-201ENST00000339950 IMPA1P29218 277 aa11.41□□□□□ -0.58
USP1-201ENST00000339950 RAB14P61106 215 aa11.41□□□□□ -0.58
USP1-201ENST00000339950 SGCGQ13326 291 aa11.41□□□□□ -0.58
USP1-201ENST00000339950 MRPL58Q14197 206 aaKnown RBP11.41□□□□□ -0.58
USP1-201ENST00000339950 SF3B4Q15427 424 aaKnown RBP eCLIP11.41□□□□□ -0.58
USP1-201ENST00000339950 HYAL4Q2M3T9 481 aa11.41□□□□□ -0.58
USP1-201ENST00000339950 ZNF542PQ5EBM4 170 aa11.41□□□□□ -0.58
USP1-201ENST00000339950 LAIR1Q6GTX8 287 aa11.41□□□□□ -0.58
USP1-201ENST00000339950 TMPRSS11AQ6ZMR5 421 aa11.41□□□□□ -0.58
USP1-201ENST00000339950 ZNF730Q6ZMV8 503 aa11.41□□□□□ -0.58
USP1-201ENST00000339950 ZNF761Q86XN6 746 aaPredicted RBP11.41□□□□□ -0.58
USP1-201ENST00000339950 KRT78Q8N1N4 520 aa11.41□□□□□ -0.58
USP1-201ENST00000339950 OR8K5Q8NH50 307 aa11.41□□□□□ -0.58
USP1-201ENST00000339950 UCN3Q969E3 161 aa11.41□□□□□ -0.58
USP1-201ENST00000339950 RDH12Q96NR8 316 aa11.41□□□□□ -0.58
USP1-201ENST00000339950 HDHD5Q9BXW7 423 aa11.41□□□□□ -0.58
USP1-201ENST00000339950 REEP4Q9H6H4 257 aa11.41□□□□□ -0.58
USP1-201ENST00000339950 SPHK2Q9NRA0 654 aa11.41□□□□□ -0.58
USP1-201ENST00000339950 ERVW-1Q9UQF0 538 aa11.41□□□□□ -0.58
USP1-201ENST00000339950 YARS2Q9Y2Z4 477 aaKnown RBP11.41□□□□□ -0.58
USP1-201ENST00000339950 IRAK3Q9Y616 596 aa11.41□□□□□ -0.58
USP1-201ENST00000339950 ZNF701M0R085 212 aaPredicted RBP11.41□□□□□ -0.58
USP1-201ENST00000339950 SSX4O60224 188 aa11.41□□□□□ -0.58
USP1-201ENST00000339950 ENTPD6O75354 484 aa11.41□□□□□ -0.58
USP1-201ENST00000339950 CENPAP49450 140 aa11.41□□□□□ -0.58
USP1-201ENST00000339950 CCR4P51679 360 aa11.41□□□□□ -0.58
USP1-201ENST00000339950 BLVRAP53004 296 aa11.41□□□□□ -0.58
USP1-201ENST00000339950 AP1S2P56377 157 aa11.41□□□□□ -0.58
USP1-201ENST00000339950 ERVFC1P60507 584 aa11.41□□□□□ -0.58
USP1-201ENST00000339950 LSM11P83369 360 aaKnown RBP eCLIP11.41□□□□□ -0.58
USP1-201ENST00000339950 MESP2Q0VG99 397 aa11.41□□□□□ -0.58
USP1-201ENST00000339950 PTGES3Q15185 160 aaKnown RBP11.41□□□□□ -0.58
USP1-201ENST00000339950 GPR68Q15743 365 aa11.41□□□□□ -0.58
USP1-201ENST00000339950 SYPL1Q16563 259 aa11.41□□□□□ -0.58
USP1-201ENST00000339950 OR2G6Q5TZ20 316 aa11.41□□□□□ -0.58
USP1-201ENST00000339950 TPGS2Q68CL5 300 aa11.41□□□□□ -0.58
USP1-201ENST00000339950 ZC3H14Q6PJT7 736 aaKnown RBP11.41□□□□□ -0.58
USP1-201ENST00000339950 HSDL2Q6YN16 418 aa11.41□□□□□ -0.58
USP1-201ENST00000339950 ADGRD2Q7Z7M1 963 aa11.41□□□□□ -0.58
USP1-201ENST00000339950 AMZ2Q86W34 360 aa11.41□□□□□ -0.58
USP1-201ENST00000339950 OR8H1Q8NGG4 311 aa11.41□□□□□ -0.58
USP1-201ENST00000339950 SLC38A4Q969I6 547 aa11.41□□□□□ -0.58
USP1-201ENST00000339950 TMEM19Q96HH6 336 aa11.41□□□□□ -0.58
USP1-201ENST00000339950 CCNB1IP1Q9NPC3 277 aa11.41□□□□□ -0.58
USP1-201ENST00000339950 PARP14Q460N5 1801 aa11.41□□□□□ -0.58
USP1-201ENST00000339950 FAM183AA6NL82 134 aa11.41□□□□□ -0.58
USP1-201ENST00000339950 GAPDHSO14556 408 aaPredicted RBP11.41□□□□□ -0.58
USP1-201ENST00000339950 COQ9O75208 318 aa11.41□□□□□ -0.58
USP1-201ENST00000339950 CD9P21926 228 aa11.41□□□□□ -0.58
USP1-201ENST00000339950 HNMTP50135 292 aa11.41□□□□□ -0.58
USP1-201ENST00000339950 CLDN2P57739 230 aa11.41□□□□□ -0.58
USP1-201ENST00000339950 PCDH1Q08174 1060 aa11.41□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms