RNA–Protein interactions for RNA: ENST00000332345.10

LIMS1-201, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 1,235 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-201ENST00000332345 CDYL2Q8N8U2 506 aa13.15□□□□□ -0.3
LIMS1-201ENST00000332345 SREK1Q8WXA9 508 aaKnown RBP13.15□□□□□ -0.3
LIMS1-201ENST00000332345 MAPKAP1Q9BPZ7 522 aa13.15□□□□□ -0.3
LIMS1-201ENST00000332345 WDR77Q9BQA1 342 aaPredicted RBP13.15□□□□□ -0.3
LIMS1-201ENST00000332345 C12orf65Q9H3J6 166 aaKnown RBP13.15□□□□□ -0.3
LIMS1-201ENST00000332345 GSTO2Q9H4Y5 243 aa13.15□□□□□ -0.3
LIMS1-201ENST00000332345 EPS8L2Q9H6S3 715 aa13.15□□□□□ -0.3
LIMS1-201ENST00000332345 DDX31Q9H8H2 851 aaKnown RBP13.15□□□□□ -0.3
LIMS1-201ENST00000332345 NECTIN3Q9NQS3 549 aa13.15□□□□□ -0.3
LIMS1-201ENST00000332345 LYARQ9NX58 379 aaKnown RBP13.15□□□□□ -0.3
LIMS1-201ENST00000332345 TEKT2Q9UIF3 430 aa13.15□□□□□ -0.3
LIMS1-201ENST00000332345 PHF11Q9UIL8 331 aa13.15□□□□□ -0.3
LIMS1-201ENST00000332345 FBXW2Q9UKT8 454 aa13.15□□□□□ -0.3
LIMS1-201ENST00000332345 IGKV3D-11A0A0A0MRZ8 115 aa13.14□□□□□ -0.31
LIMS1-201ENST00000332345 ARHGAP10A1A4S6 786 aa13.14□□□□□ -0.31
LIMS1-201ENST00000332345 MANBAO00462 879 aa13.14□□□□□ -0.31
LIMS1-201ENST00000332345 SLC28A2O43868 658 aa13.14□□□□□ -0.31
LIMS1-201ENST00000332345 TRIM13O60858 407 aa13.14□□□□□ -0.31
LIMS1-201ENST00000332345 SPAG7O75391 227 aa13.14□□□□□ -0.31
LIMS1-201ENST00000332345 ETHE1O95571 254 aa13.14□□□□□ -0.31
LIMS1-201ENST00000332345 HSD3B1P14060 373 aa13.14□□□□□ -0.31
LIMS1-201ENST00000332345 HSD3B2P26439 372 aa13.14□□□□□ -0.31
LIMS1-201ENST00000332345 BSGP35613 385 aa13.14□□□□□ -0.31
LIMS1-201ENST00000332345 CASRP41180 1078 aa13.14□□□□□ -0.31
LIMS1-201ENST00000332345 BUD31P41223 144 aaPredicted RBP13.14□□□□□ -0.31
LIMS1-201ENST00000332345 SERTAD2Q14140 314 aa13.14□□□□□ -0.31
LIMS1-201ENST00000332345 CEP85LQ5SZL2 805 aa13.14□□□□□ -0.31
LIMS1-201ENST00000332345 IGFL2Q6UWQ7 119 aa13.14□□□□□ -0.31
LIMS1-201ENST00000332345 LRIG3Q6UXM1 1119 aa13.14□□□□□ -0.31
LIMS1-201ENST00000332345 NUDT13Q86X67 352 aa13.14□□□□□ -0.31
LIMS1-201ENST00000332345 C10orf107Q8IVU9 208 aa13.14□□□□□ -0.31
LIMS1-201ENST00000332345 SCUBE1Q8IWY4 988 aa13.14□□□□□ -0.31
LIMS1-201ENST00000332345 HOMEZQ8IX15 550 aa13.14□□□□□ -0.31
LIMS1-201ENST00000332345 GBP7Q8N8V2 638 aaPredicted RBP13.14□□□□□ -0.31
LIMS1-201ENST00000332345 BRIX1Q8TDN6 353 aaKnown RBP13.14□□□□□ -0.31
LIMS1-201ENST00000332345 TCP10LQ8TDR4 215 aa13.14□□□□□ -0.31
LIMS1-201ENST00000332345 PSMF1Q92530 271 aa13.14□□□□□ -0.31
LIMS1-201ENST00000332345 TANKQ92844 425 aa13.14□□□□□ -0.31
LIMS1-201ENST00000332345 SORBS1Q9BX66 1292 aaKnown RBP13.14□□□□□ -0.31
LIMS1-201ENST00000332345 CENPHQ9H3R5 247 aa13.14□□□□□ -0.31
LIMS1-201ENST00000332345 MMP25Q9NPA2 562 aa13.14□□□□□ -0.31
LIMS1-201ENST00000332345 MID1IP1Q9NPA3 183 aa13.14□□□□□ -0.31
LIMS1-201ENST00000332345 FARSBQ9NSD9 589 aaKnown RBP13.14□□□□□ -0.31
LIMS1-201ENST00000332345 PTGFRNQ9P2B2 879 aa13.14□□□□□ -0.31
LIMS1-201ENST00000332345 VPS29Q9UBQ0 182 aa13.14□□□□□ -0.31
LIMS1-201ENST00000332345 ADAM29Q9UKF5 820 aa13.14□□□□□ -0.31
LIMS1-201ENST00000332345 SLC12A4Q9UP95 1085 aa13.14□□□□□ -0.31
LIMS1-201ENST00000332345 A8MUI8 341 aa13.13□□□□□ -0.31
LIMS1-201ENST00000332345 CTIFO43310 598 aaKnown RBP13.13□□□□□ -0.31
LIMS1-201ENST00000332345 PROM1O43490 865 aa13.13□□□□□ -0.31
LIMS1-201ENST00000332345 CRCPO75575 148 aa13.13□□□□□ -0.31
LIMS1-201ENST00000332345 KLK1P06870 262 aa13.13□□□□□ -0.31
LIMS1-201ENST00000332345 FAM58BPP0C7Q3 252 aa13.13□□□□□ -0.31
LIMS1-201ENST00000332345 MYZAPP0CAP1 466 aa13.13□□□□□ -0.31
LIMS1-201ENST00000332345 ITGAMP11215 1152 aa13.13□□□□□ -0.31
LIMS1-201ENST00000332345 HNRNPFP52597 415 aaKnown RBP13.13□□□□□ -0.31
LIMS1-201ENST00000332345 SLC26A5P58743 744 aa13.13□□□□□ -0.31
LIMS1-201ENST00000332345 MFAP5Q13361 173 aa13.13□□□□□ -0.31
LIMS1-201ENST00000332345 MRM1Q6IN84 353 aaKnown RBP13.13□□□□□ -0.31
LIMS1-201ENST00000332345 LINC00696Q6ZRV3 163 aa13.13□□□□□ -0.31
LIMS1-201ENST00000332345 FRMD7Q6ZUT3 714 aa13.13□□□□□ -0.31
LIMS1-201ENST00000332345 METTL4Q8N3J2 472 aa13.13□□□□□ -0.31
LIMS1-201ENST00000332345 SIRT6Q8N6T7 355 aa13.13□□□□□ -0.31
LIMS1-201ENST00000332345 EFCAB3Q8N7B9 438 aa13.13□□□□□ -0.31
LIMS1-201ENST00000332345 RBMXL3Q8N7X1 1067 aaKnown RBP13.13□□□□□ -0.31
LIMS1-201ENST00000332345 TMEM52Q8NDY8 209 aa13.13□□□□□ -0.31
LIMS1-201ENST00000332345 AGAP11Q8TF27 550 aa13.13□□□□□ -0.31
LIMS1-201ENST00000332345 CNDP1Q96KN2 507 aa13.13□□□□□ -0.31
LIMS1-201ENST00000332345 ZIM3Q96PE6 472 aa13.13□□□□□ -0.31
LIMS1-201ENST00000332345 FAM111AQ96PZ2 611 aa13.13□□□□□ -0.31
LIMS1-201ENST00000332345 CSF3RQ99062 836 aa13.13□□□□□ -0.31
LIMS1-201ENST00000332345 MFRPQ9BY79 579 aa13.13□□□□□ -0.31
LIMS1-201ENST00000332345 ALOXE3Q9BYJ1 711 aa13.13□□□□□ -0.31
LIMS1-201ENST00000332345 RPF2Q9H7B2 306 aaKnown RBP13.13□□□□□ -0.31
LIMS1-201ENST00000332345 WDR41Q9HAD4 459 aa13.13□□□□□ -0.31
LIMS1-201ENST00000332345 KCNK13Q9HB14 408 aa13.13□□□□□ -0.31
LIMS1-201ENST00000332345 ZBTB20Q9HC78 741 aaPredicted RBP13.13□□□□□ -0.31
LIMS1-201ENST00000332345 SLAMF7Q9NQ25 335 aa13.13□□□□□ -0.31
LIMS1-201ENST00000332345 PNO1Q9NRX1 252 aaKnown RBP13.13□□□□□ -0.31
LIMS1-201ENST00000332345 STMN3Q9NZ72 180 aa13.13□□□□□ -0.31
LIMS1-201ENST00000332345 B3GNT3Q9Y2A9 372 aa13.13□□□□□ -0.31
LIMS1-201ENST00000332345 ASB4Q9Y574 426 aa13.13□□□□□ -0.31
LIMS1-201ENST00000332345 A0A0A6YYD5 115 aa13.12□□□□□ -0.31
LIMS1-201ENST00000332345 DYTNA2CJ06 578 aa13.12□□□□□ -0.31
LIMS1-201ENST00000332345 SAGE2PA6NJ88 616 aa13.12□□□□□ -0.31
LIMS1-201ENST00000332345 A8MUA0 341 aa13.12□□□□□ -0.31
LIMS1-201ENST00000332345 GUCY1B2O75343 617 aa13.12□□□□□ -0.31
LIMS1-201ENST00000332345 EEDO75530 441 aaKnown RBP13.12□□□□□ -0.31
LIMS1-201ENST00000332345 IFNA16P05015 189 aa13.12□□□□□ -0.31
LIMS1-201ENST00000332345 CELA2AP08217 269 aa13.12□□□□□ -0.31
LIMS1-201ENST00000332345 PPP2R1BP30154 601 aa13.12□□□□□ -0.31
LIMS1-201ENST00000332345 TAS2R50P59544 299 aa13.12□□□□□ -0.31
LIMS1-201ENST00000332345 CSTF3Q12996 717 aaKnown RBP13.12□□□□□ -0.31
LIMS1-201ENST00000332345 PCLAFQ15004 111 aa13.12□□□□□ -0.31
LIMS1-201ENST00000332345 TERF2Q15554 542 aa13.12□□□□□ -0.31
LIMS1-201ENST00000332345 NADK2Q4G0N4 442 aa13.12□□□□□ -0.31
LIMS1-201ENST00000332345 BEND6Q5SZJ8 279 aaPredicted RBP13.12□□□□□ -0.31
LIMS1-201ENST00000332345 CCNYL2Q5T2Q4 361 aa13.12□□□□□ -0.31
LIMS1-201ENST00000332345 ABHD17BQ5VST6 288 aa13.12□□□□□ -0.31
LIMS1-201ENST00000332345 H3F3CQ6NXT2 135 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms