RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 ZNF431Q8TF32 576 aaPredicted RBP5.06□□□□□ -1.6
SCN1A-201ENST00000303395 LRTOMTQ8WZ04 291 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 TMBIM1Q969X1 311 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 EMID1Q96A84 441 aaPredicted RBP5.06□□□□□ -1.6
SCN1A-201ENST00000303395 GAL3ST1Q99999 423 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 MINDY3Q9H8M7 445 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 CERS4Q9HA82 394 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 FAM105AQ9NUU6 356 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 FZD10Q9ULW2 581 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 SPIN1Q9Y657 262 aaPredicted RBP5.06□□□□□ -1.6
SCN1A-201ENST00000303395 LRP5LA4QPB2 252 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 H3BSA7 217 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 TLR4O00206 839 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 AGRPO00253 132 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 AQP9O43315 295 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 PRAMEF2O60811 474 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 RNGTTO60942 597 aaKnown RBP5.06□□□□□ -1.6
SCN1A-201ENST00000303395 TMEM63AO94886 807 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 C1QBP02746 253 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 DRD2P14416 443 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 ZNF20P17024 532 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 CD247P20963 164 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 CTHP32929 405 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 SLC6A9P48067 706 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 CXCR3P49682 368 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 CHAF1BQ13112 559 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 UBAP2Q5T6F2 1119 aaKnown RBP5.06□□□□□ -1.6
SCN1A-201ENST00000303395 TMEM214Q6NUQ4 689 aaKnown RBP5.06□□□□□ -1.6
SCN1A-201ENST00000303395 STPG2Q8N412 459 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 OR1J4Q8NGS1 313 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 LMO3Q8TAP4 145 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 SLC35B4Q969S0 331 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 WDFY2Q96P53 400 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 PIP5K1AQ99755 562 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 SPIN2AQ99865 258 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 SPIN2BQ9BPZ2 258 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 NKX1-2Q9UD57 310 aaPredicted RBP5.06□□□□□ -1.6
SCN1A-201ENST00000303395 EPHA6Q9UF33 1036 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 RGPD8O14715 1765 aaPredicted RBP5.06□□□□□ -1.6
SCN1A-201ENST00000303395 C4AP0C0L4 1744 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 C4BP0C0L5 1744 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 HEATR5BQ9P2D3 2071 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 C17orf113A0A1B0GUU1 675 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 C9J4A7 227 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 ADAMTS3O15072 1205 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 MUSKO15146 869 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 TP73O15350 636 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 PAK4O96013 591 aaPredicted RBP5.06□□□□□ -1.6
SCN1A-201ENST00000303395 IFNA17P01571 189 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 HCKP08631 526 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 CTSHP09668 335 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 ZNF823P16415 610 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 SLC7A9P82251 487 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 UAP1L1Q3KQV9 507 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 LSMEM2Q8N112 164 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 IQCF1Q8N6M8 205 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 HORMAD2Q8N7B1 307 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 SLC25A21Q9BQT8 299 aaPredicted RBP5.06□□□□□ -1.6
SCN1A-201ENST00000303395 TMEM246Q9BRR3 403 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 FUNDC2Q9BWH2 189 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 SLC5A7Q9GZV3 580 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 CPNE7Q9UBL6 633 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 SLC35F4A4IF30 521 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 C1orf196B1AJZ1 125 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 PSMD9O00233 223 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 SYT5O00445 386 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 PEX10O60683 326 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 EIF4EP06730 217 aaKnown RBP5.06□□□□□ -1.6
SCN1A-201ENST00000303395 PSKH1P11801 424 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 PRPH2P23942 346 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 TSFMP43897 325 aaKnown RBP5.06□□□□□ -1.6
SCN1A-201ENST00000303395 VEGFCP49767 419 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 DCDC1P59894 354 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 RAB31Q13636 194 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 POU6F1Q14863 301 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 SIX1Q15475 284 aaPredicted RBP5.06□□□□□ -1.6
SCN1A-201ENST00000303395 TMEM35AQ53FP2 167 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 ARHGAP11AQ6P4F7 1023 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 HS3ST5Q8IZT8 346 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 OR56B2PQ8NGI1 322 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 STOML3Q8TAV4 291 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 PHF21BQ96EK2 531 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 RBM18Q96H35 190 aaKnown RBP5.06□□□□□ -1.6
SCN1A-201ENST00000303395 TREX2Q9BQ50 279 aaPredicted RBP5.06□□□□□ -1.6
SCN1A-201ENST00000303395 ACAD8Q9UKU7 415 aa5.06□□□□□ -1.6
SCN1A-201ENST00000303395 NAV1Q8NEY1 1877 aa5.05□□□□□ -1.6
SCN1A-201ENST00000303395 ZGRF1Q86YA3 2104 aa5.05□□□□□ -1.6
SCN1A-201ENST00000303395 SLC12A8A0AV02 714 aa5.05□□□□□ -1.6
SCN1A-201ENST00000303395 E9PAM4 449 aa5.05□□□□□ -1.6
SCN1A-201ENST00000303395 C1QTNF3-AMACRE9PGA6 284 aa5.05□□□□□ -1.6
SCN1A-201ENST00000303395 TBX1O43435 398 aa5.05□□□□□ -1.6
SCN1A-201ENST00000303395 RNF13O43567 381 aa5.05□□□□□ -1.6
SCN1A-201ENST00000303395 SCGB1D2O95969 90 aa5.05□□□□□ -1.6
SCN1A-201ENST00000303395 MMP2P08253 660 aa5.05□□□□□ -1.6
SCN1A-201ENST00000303395 TFPTP0C1Z6 253 aa5.05□□□□□ -1.6
SCN1A-201ENST00000303395 ZNF16P17020 682 aaPredicted RBP5.05□□□□□ -1.6
SCN1A-201ENST00000303395 CMPK1P30085 196 aa5.05□□□□□ -1.6
SCN1A-201ENST00000303395 CDC25CP30307 473 aa5.05□□□□□ -1.6
SCN1A-201ENST00000303395 CCKBRP32239 447 aa5.05□□□□□ -1.6
SCN1A-201ENST00000303395 SNRPGP62308 76 aaKnown RBP5.05□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms