RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 WDR26Q9H7D7 661 aa13.45□□□□□ -0.26
CCDC88A-201ENST00000263630 FAIMQ9NVQ4 179 aa13.45□□□□□ -0.26
CCDC88A-201ENST00000263630 LATO43561 262 aa13.45□□□□□ -0.26
CCDC88A-201ENST00000263630 SLBPQ14493 270 aaKnown RBP eCLIP13.45□□□□□ -0.26
CCDC88A-201ENST00000263630 SGPP2Q8IWX5 399 aa13.45□□□□□ -0.26
CCDC88A-201ENST00000263630 IL17RCQ8NAC3 791 aa13.45□□□□□ -0.26
CCDC88A-201ENST00000263630 B3GALT1Q9Y5Z6 326 aa13.45□□□□□ -0.26
CCDC88A-201ENST00000263630 FADS1O60427 444 aa13.45□□□□□ -0.26
CCDC88A-201ENST00000263630 CDH15P55291 814 aa13.45□□□□□ -0.26
CCDC88A-201ENST00000263630 SEC13P55735 322 aa13.45□□□□□ -0.26
CCDC88A-201ENST00000263630 TAF10Q12962 218 aa13.45□□□□□ -0.26
CCDC88A-201ENST00000263630 SLC35F1Q5T1Q4 408 aa13.45□□□□□ -0.26
CCDC88A-201ENST00000263630 ZNF439Q8NDP4 499 aa13.45□□□□□ -0.26
CCDC88A-201ENST00000263630 OR6Q1Q8NGQ2 317 aa13.45□□□□□ -0.26
CCDC88A-201ENST00000263630 NFKBIDQ8NI38 313 aa13.45□□□□□ -0.26
CCDC88A-201ENST00000263630 CNOT9Q92600 299 aaKnown RBP13.45□□□□□ -0.26
CCDC88A-201ENST00000263630 EIF4EP06730 217 aaKnown RBP13.45□□□□□ -0.26
CCDC88A-201ENST00000263630 CAP1Q01518 475 aa13.45□□□□□ -0.26
CCDC88A-201ENST00000263630 SLC16A10Q8TF71 515 aa13.45□□□□□ -0.26
CCDC88A-201ENST00000263630 SORCS1Q8WY21 1168 aa13.45□□□□□ -0.26
CCDC88A-201ENST00000263630 DDX1Q92499 740 aaKnown RBP13.45□□□□□ -0.26
CCDC88A-201ENST00000263630 BEX2Q9BXY8 128 aa13.45□□□□□ -0.26
CCDC88A-201ENST00000263630 SLA2Q9H6Q3 261 aa13.45□□□□□ -0.26
CCDC88A-201ENST00000263630 BEX1Q9HBH7 125 aa13.45□□□□□ -0.26
CCDC88A-201ENST00000263630 RXFP3Q9NSD7 469 aa13.45□□□□□ -0.26
CCDC88A-201ENST00000263630 H3BSH0 61 aa13.44□□□□□ -0.26
CCDC88A-201ENST00000263630 SCAMP1O15126 338 aa13.44□□□□□ -0.26
CCDC88A-201ENST00000263630 CFIP05156 583 aa13.44□□□□□ -0.26
CCDC88A-201ENST00000263630 HEXBP07686 556 aa13.44□□□□□ -0.26
CCDC88A-201ENST00000263630 TACR2P21452 398 aa13.44□□□□□ -0.26
CCDC88A-201ENST00000263630 HNF1BP35680 557 aa13.44□□□□□ -0.26
CCDC88A-201ENST00000263630 PMS2P3Q13401 168 aa13.44□□□□□ -0.26
CCDC88A-201ENST00000263630 NAPRTQ6XQN6 538 aa13.44□□□□□ -0.26
CCDC88A-201ENST00000263630 OR2AP1Q8NGE2 309 aa13.44□□□□□ -0.26
CCDC88A-201ENST00000263630 PPP1R35Q8TAP8 253 aa13.44□□□□□ -0.26
CCDC88A-201ENST00000263630 HNRNPABQ99729 332 aaKnown RBP13.44□□□□□ -0.26
CCDC88A-201ENST00000263630 ADAM19Q9H013 955 aa13.44□□□□□ -0.26
CCDC88A-201ENST00000263630 POLE4Q9NR33 117 aa13.44□□□□□ -0.26
CCDC88A-201ENST00000263630 FAM120CQ9NX05 1096 aaKnown RBP13.44□□□□□ -0.26
CCDC88A-201ENST00000263630 NENFQ9UMX5 172 aa13.44□□□□□ -0.26
CCDC88A-201ENST00000263630 TSPEARQ8WU66 669 aa13.44□□□□□ -0.26
CCDC88A-201ENST00000263630 CHRAC1Q9NRG0 131 aa13.44□□□□□ -0.26
CCDC88A-201ENST00000263630 HCN4Q9Y3Q4 1203 aa13.44□□□□□ -0.26
CCDC88A-201ENST00000263630 PCDHGA7Q9Y5G6 932 aa13.44□□□□□ -0.26
CCDC88A-201ENST00000263630 WNT9AO14904 365 aa13.44□□□□□ -0.26
CCDC88A-201ENST00000263630 KLK1P06870 262 aa13.44□□□□□ -0.26
CCDC88A-201ENST00000263630 ZNF182P17025 639 aaPredicted RBP13.44□□□□□ -0.26
CCDC88A-201ENST00000263630 ADCYAP1R1P41586 468 aa13.44□□□□□ -0.26
CCDC88A-201ENST00000263630 NPBWR1P48145 328 aa13.44□□□□□ -0.26
CCDC88A-201ENST00000263630 CTC1Q2NKJ3 1217 aa13.44□□□□□ -0.26
CCDC88A-201ENST00000263630 SPATC1Q76KD6 591 aa13.44□□□□□ -0.26
CCDC88A-201ENST00000263630 ZDHHC1Q8WTX9 485 aa13.44□□□□□ -0.26
CCDC88A-201ENST00000263630 C2orf15Q8WU43 125 aaKnown RBP13.44□□□□□ -0.26
CCDC88A-201ENST00000263630 DDX4Q9NQI0 724 aaKnown RBP13.44□□□□□ -0.26
CCDC88A-201ENST00000263630 SLC7A4O43246 635 aa13.44□□□□□ -0.26
CCDC88A-201ENST00000263630 NADK2Q4G0N4 442 aa13.44□□□□□ -0.26
CCDC88A-201ENST00000263630 TSSK6Q9BXA6 273 aa13.44□□□□□ -0.26
CCDC88A-201ENST00000263630 NEXMIFQ5QGS0 1516 aa13.44□□□□□ -0.26
CCDC88A-201ENST00000263630 ERI3O43414 337 aaKnown RBP13.44□□□□□ -0.26
CCDC88A-201ENST00000263630 SCNN1AP37088 669 aa13.44□□□□□ -0.26
CCDC88A-201ENST00000263630 CHRNA4P43681 627 aa13.44□□□□□ -0.26
CCDC88A-201ENST00000263630 ARHGAP19Q14CB8 494 aa13.44□□□□□ -0.26
CCDC88A-201ENST00000263630 FRG2Q64ET8 278 aa13.44□□□□□ -0.26
CCDC88A-201ENST00000263630 KIAA0895LQ68EN5 471 aa13.44□□□□□ -0.26
CCDC88A-201ENST00000263630 TLDC1Q6P9B6 456 aa13.44□□□□□ -0.26
CCDC88A-201ENST00000263630 ZNF572Q7Z3I7 529 aaPredicted RBP13.44□□□□□ -0.26
CCDC88A-201ENST00000263630 TMPRSS12Q86WS5 348 aa13.44□□□□□ -0.26
CCDC88A-201ENST00000263630 FAM160A2Q8N612 972 aaPredicted RBP13.44□□□□□ -0.26
CCDC88A-201ENST00000263630 C16orf78Q8WTQ4 265 aa13.44□□□□□ -0.26
CCDC88A-201ENST00000263630 TMBIM1Q969X1 311 aa13.44□□□□□ -0.26
CCDC88A-201ENST00000263630 LRFN5Q96NI6 719 aa13.44□□□□□ -0.26
CCDC88A-201ENST00000263630 FRG2BQ96QU4 278 aa13.44□□□□□ -0.26
CCDC88A-201ENST00000263630 ZFP37Q9Y6Q3 630 aaPredicted RBP13.44□□□□□ -0.26
CCDC88A-201ENST00000263630 LOC102723532A0A0G2JNH3 316 aa13.44□□□□□ -0.26
CCDC88A-201ENST00000263630 A0A1B0GV50 99 aa13.44□□□□□ -0.26
CCDC88A-201ENST00000263630 SEC14L6B5MCN3 397 aa13.44□□□□□ -0.26
CCDC88A-201ENST00000263630 KITLGP21583 273 aa13.44□□□□□ -0.26
CCDC88A-201ENST00000263630 CDK6Q00534 326 aa13.44□□□□□ -0.26
CCDC88A-201ENST00000263630 FMO1Q01740 532 aa13.44□□□□□ -0.26
CCDC88A-201ENST00000263630 C10orf62Q5T681 223 aaPredicted RBP13.44□□□□□ -0.26
CCDC88A-201ENST00000263630 LRRTM4Q86VH4 590 aa13.44□□□□□ -0.26
CCDC88A-201ENST00000263630 PRMT8Q9NR22 394 aaPredicted RBP13.44□□□□□ -0.26
CCDC88A-201ENST00000263630 ENPP3O14638 875 aa13.44□□□□□ -0.26
CCDC88A-201ENST00000263630 CD97P48960 835 aa13.44□□□□□ -0.26
CCDC88A-201ENST00000263630 GPR143P51810 404 aa13.44□□□□□ -0.26
CCDC88A-201ENST00000263630 NOMO3P69849 1222 aa13.44□□□□□ -0.26
CCDC88A-201ENST00000263630 SNTB2Q13425 540 aaKnown RBP13.44□□□□□ -0.26
CCDC88A-201ENST00000263630 TSTD2Q5T7W7 516 aa13.44□□□□□ -0.26
CCDC88A-201ENST00000263630 HEBP1Q9NRV9 189 aa13.44□□□□□ -0.26
CCDC88A-201ENST00000263630 CLEC4EQ9ULY5 219 aa13.44□□□□□ -0.26
CCDC88A-201ENST00000263630 ADAP00813 363 aa13.44□□□□□ -0.26
CCDC88A-201ENST00000263630 FLYWCH1Q4VC44 716 aa13.44□□□□□ -0.26
CCDC88A-201ENST00000263630 KCNIP2Q9NS61 270 aa13.44□□□□□ -0.26
CCDC88A-201ENST00000263630 SIX4Q9UIU6 781 aa13.44□□□□□ -0.26
CCDC88A-201ENST00000263630 A8MUA0 341 aa13.43□□□□□ -0.26
CCDC88A-201ENST00000263630 GLSO94925 669 aaPredicted RBP13.43□□□□□ -0.26
CCDC88A-201ENST00000263630 UBE2NP61088 152 aaKnown RBP13.43□□□□□ -0.26
CCDC88A-201ENST00000263630 BEX3Q00994 111 aa13.43□□□□□ -0.26
CCDC88A-201ENST00000263630 DCBLD1Q8N8Z6 715 aa13.43□□□□□ -0.26
CCDC88A-201ENST00000263630 SPTSSAQ969W0 71 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms