RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 ERAP2Q6P179 960 aa20.33■□□□□ 0.84
TRIM28-201ENST00000253024 TECPR1Q7Z6L1 1165 aa20.33■□□□□ 0.84
TRIM28-201ENST00000253024 METTL3Q86U44 580 aaKnown RBP20.33■□□□□ 0.84
TRIM28-201ENST00000253024 LACC1Q8IV20 430 aa20.33■□□□□ 0.84
TRIM28-201ENST00000253024 OR8H2Q8N162 312 aa20.33■□□□□ 0.84
TRIM28-201ENST00000253024 PARP16Q8N5Y8 322 aa20.33■□□□□ 0.84
TRIM28-201ENST00000253024 PADI2Q9Y2J8 665 aa20.33■□□□□ 0.84
TRIM28-201ENST00000253024 KLHL20Q9Y2M5 609 aa20.33■□□□□ 0.84
TRIM28-201ENST00000253024 SCN2AQ99250 2005 aa20.32■□□□□ 0.84
TRIM28-201ENST00000253024 M0R3H8 397 aa20.32■□□□□ 0.84
TRIM28-201ENST00000253024 MOSPD3O75425 235 aa20.32■□□□□ 0.84
TRIM28-201ENST00000253024 CCNB2O95067 398 aa20.32■□□□□ 0.84
TRIM28-201ENST00000253024 ADH1AP07327 375 aa20.32■□□□□ 0.84
TRIM28-201ENST00000253024 C8orf89P0DMQ9 161 aa20.32■□□□□ 0.84
TRIM28-201ENST00000253024 MMP12P39900 470 aa20.32■□□□□ 0.84
TRIM28-201ENST00000253024 EIF2DP41214 584 aaKnown RBP20.32■□□□□ 0.84
TRIM28-201ENST00000253024 RGS6P49758 472 aa20.32■□□□□ 0.84
TRIM28-201ENST00000253024 PTPN5P54829 565 aa20.32■□□□□ 0.84
TRIM28-201ENST00000253024 TAB1Q15750 504 aa20.32■□□□□ 0.84
TRIM28-201ENST00000253024 TMIGD1Q6UXZ0 262 aa20.32■□□□□ 0.84
TRIM28-201ENST00000253024 SHFQ7M4L6 423 aa20.32■□□□□ 0.84
TRIM28-201ENST00000253024 PITX2Q99697 317 aa20.32■□□□□ 0.84
TRIM28-201ENST00000253024 SIAEQ9HAT2 523 aa20.32■□□□□ 0.84
TRIM28-201ENST00000253024 CCDC177Q9NQR7 707 aaPredicted RBP20.32■□□□□ 0.84
TRIM28-201ENST00000253024 B3GNT3Q9Y2A9 372 aa20.32■□□□□ 0.84
TRIM28-201ENST00000253024 SCN3AQ9NY46 2000 aa20.32■□□□□ 0.84
TRIM28-201ENST00000253024 PSMD11O00231 422 aa20.32■□□□□ 0.84
TRIM28-201ENST00000253024 RNASET2O00584 256 aaKnown RBP20.32■□□□□ 0.84
TRIM28-201ENST00000253024 FRS3O43559 492 aa20.32■□□□□ 0.84
TRIM28-201ENST00000253024 PRMT3O60678 531 aa20.32■□□□□ 0.84
TRIM28-201ENST00000253024 SEMA7AO75326 666 aa20.32■□□□□ 0.84
TRIM28-201ENST00000253024 RPLP0P05388 317 aaKnown RBP20.32■□□□□ 0.84
TRIM28-201ENST00000253024 CCL5P13501 91 aa20.32■□□□□ 0.84
TRIM28-201ENST00000253024 S100A5P33763 92 aa20.32■□□□□ 0.84
TRIM28-201ENST00000253024 ZMAT1Q5H9K5 638 aa20.32■□□□□ 0.84
TRIM28-201ENST00000253024 HIST2H2AA3Q6FI13 130 aa20.32■□□□□ 0.84
TRIM28-201ENST00000253024 DESI1Q6ICB0 168 aa20.32■□□□□ 0.84
TRIM28-201ENST00000253024 TRIM40Q6P9F5 258 aa20.32■□□□□ 0.84
TRIM28-201ENST00000253024 OR52N2Q8NGI0 321 aa20.32■□□□□ 0.84
TRIM28-201ENST00000253024 ARSGQ96EG1 525 aa20.32■□□□□ 0.84
TRIM28-201ENST00000253024 TSC22D4Q9Y3Q8 395 aa20.32■□□□□ 0.84
TRIM28-201ENST00000253024 CNOT3O75175 753 aaKnown RBP20.31■□□□□ 0.84
TRIM28-201ENST00000253024 PCCBP05166 539 aa20.31■□□□□ 0.84
TRIM28-201ENST00000253024 DGKGP49619 791 aa20.31■□□□□ 0.84
TRIM28-201ENST00000253024 TEAD4Q15561 434 aa20.31■□□□□ 0.84
TRIM28-201ENST00000253024 OR9A1PQ8NGU1 263 aa20.31■□□□□ 0.84
TRIM28-201ENST00000253024 IPCEF1Q8WWN9 437 aaPredicted RBP20.31■□□□□ 0.84
TRIM28-201ENST00000253024 TMEM19Q96HH6 336 aa20.31■□□□□ 0.84
TRIM28-201ENST00000253024 FCRL1Q96LA6 429 aa20.31■□□□□ 0.84
TRIM28-201ENST00000253024 COL21A1Q96P44 957 aa20.31■□□□□ 0.84
TRIM28-201ENST00000253024 PHOX2BQ99453 314 aa20.31■□□□□ 0.84
TRIM28-201ENST00000253024 MGLLQ99685 303 aa20.31■□□□□ 0.84
TRIM28-201ENST00000253024 DNMT3AQ9Y6K1 912 aaPredicted RBP20.31■□□□□ 0.84
TRIM28-201ENST00000253024 A0A1W2PS29 197 aa20.31■□□□□ 0.84
TRIM28-201ENST00000253024 SYNDIG1LA6NDD5 238 aa20.31■□□□□ 0.84
TRIM28-201ENST00000253024 METTL15A6NJ78 407 aa20.31■□□□□ 0.84
TRIM28-201ENST00000253024 KCNK2O95069 426 aa20.31■□□□□ 0.84
TRIM28-201ENST00000253024 SOD1P00441 154 aa20.31■□□□□ 0.84
TRIM28-201ENST00000253024 C6P13671 934 aa20.31■□□□□ 0.84
TRIM28-201ENST00000253024 HOXB3P14651 431 aaPredicted RBP20.31■□□□□ 0.84
TRIM28-201ENST00000253024 PPP5CP53041 499 aa20.31■□□□□ 0.84
TRIM28-201ENST00000253024 DSTNP60981 165 aa20.31■□□□□ 0.84
TRIM28-201ENST00000253024 ST8SIA6P61647 398 aa20.31■□□□□ 0.84
TRIM28-201ENST00000253024 VN1R5Q7Z5H4 357 aa20.31■□□□□ 0.84
TRIM28-201ENST00000253024 OR4D11Q8NGI4 311 aa20.31■□□□□ 0.84
TRIM28-201ENST00000253024 SLC38A5Q8WUX1 472 aa20.31■□□□□ 0.84
TRIM28-201ENST00000253024 PPP1R14BQ96C90 147 aa20.31■□□□□ 0.84
TRIM28-201ENST00000253024 LGR4Q9BXB1 951 aa20.31■□□□□ 0.84
TRIM28-201ENST00000253024 NUAK2Q9H093 628 aa20.31■□□□□ 0.84
TRIM28-201ENST00000253024 TEX10Q9NXF1 929 aaPredicted RBP20.31■□□□□ 0.84
TRIM28-201ENST00000253024 GPR37L1O60883 481 aa20.31■□□□□ 0.84
TRIM28-201ENST00000253024 LILRB3O75022 631 aa20.31■□□□□ 0.84
TRIM28-201ENST00000253024 IFNW1P05000 195 aa20.31■□□□□ 0.84
TRIM28-201ENST00000253024 MAPK12P53778 367 aa20.31■□□□□ 0.84
TRIM28-201ENST00000253024 SYPL1Q16563 259 aa20.31■□□□□ 0.84
TRIM28-201ENST00000253024 UBE2UQ5VVX9 321 aa20.31■□□□□ 0.84
TRIM28-201ENST00000253024 SLC46A3Q7Z3Q1 461 aa20.31■□□□□ 0.84
TRIM28-201ENST00000253024 ADGRF3Q8IZF5 1079 aa20.31■□□□□ 0.84
TRIM28-201ENST00000253024 PIP5K1AQ99755 562 aa20.31■□□□□ 0.84
TRIM28-201ENST00000253024 GABARAPL3Q9BY60 117 aa20.31■□□□□ 0.84
TRIM28-201ENST00000253024 FBXO8Q9NRD0 319 aa20.31■□□□□ 0.84
TRIM28-201ENST00000253024 SNTG1Q9NSN8 517 aa20.31■□□□□ 0.84
TRIM28-201ENST00000253024 EHD3Q9NZN3 535 aa20.31■□□□□ 0.84
TRIM28-201ENST00000253024 EIF3FO00303 357 aaPredicted RBP20.3■□□□□ 0.84
TRIM28-201ENST00000253024 TFECO14948 347 aaPredicted RBP20.3■□□□□ 0.84
TRIM28-201ENST00000253024 ERAL1O75616 437 aaKnown RBP20.3■□□□□ 0.84
TRIM28-201ENST00000253024 CEBPBP17676 345 aa20.3■□□□□ 0.84
TRIM28-201ENST00000253024 KCNC4Q03721 635 aa20.3■□□□□ 0.84
TRIM28-201ENST00000253024 NXPE4Q6UWF7 544 aa20.3■□□□□ 0.84
TRIM28-201ENST00000253024 TCEANCQ8N8B7 351 aa20.3■□□□□ 0.84
TRIM28-201ENST00000253024 ARRDC3Q96B67 414 aa20.3■□□□□ 0.84
TRIM28-201ENST00000253024 NLNQ9BYT8 704 aa20.3■□□□□ 0.84
TRIM28-201ENST00000253024 BRF2Q9HAW0 419 aa20.3■□□□□ 0.84
TRIM28-201ENST00000253024 TVP23BQ9NYZ1 205 aa20.3■□□□□ 0.84
TRIM28-201ENST00000253024 KLHL42Q9P2K6 505 aa20.3■□□□□ 0.84
TRIM28-201ENST00000253024 IL20RAQ9UHF4 553 aa20.3■□□□□ 0.84
TRIM28-201ENST00000253024 CARD8Q9Y2G2 431 aa20.3■□□□□ 0.84
TRIM28-201ENST00000253024 POFUT2Q9Y2G5 429 aa20.3■□□□□ 0.84
TRIM28-201ENST00000253024 HSPE1-MOB4S4R3N1 261 aa20.3■□□□□ 0.84
TRIM28-201ENST00000253024 AGAP5A6NIR3 686 aa20.3■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms