RNA–Protein interactions for RNA: ENST00000011700.10

VPS13D-201, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 10,969 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-201ENST00000011700 RAB8AP61006 207 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 SP2Q02086 613 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 SCGB2A2Q13296 93 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 CCDC58Q4VC31 144 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 CCDC71Q8IV32 467 aaPredicted RBP5.87□□□□□ -1.47
VPS13D-201ENST00000011700 BEST3Q8N1M1 668 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 SLAIN1Q8ND83 568 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 TGM7Q96PF1 710 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 ZNF696Q9H7X3 374 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 SLAMF7Q9NQ25 335 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 SLC22A11Q9NSA0 550 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 RLIMQ9NVW2 624 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 PDHXO00330 501 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 KIAA0355O15063 1070 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 B3GALNT1O75752 331 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 PNMTP11086 282 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 MLLT3P42568 568 aaPredicted RBP5.87□□□□□ -1.47
VPS13D-201ENST00000011700 IDH3AP50213 366 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 AQP4P55087 323 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 CDK3Q00526 305 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 CTBP1Q13363 440 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 ORC1Q13415 861 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 RAB30Q15771 203 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 EMC10Q5UCC4 262 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 HMBOX1Q6NT76 420 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 LPCAT3Q6P1A2 487 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 CERKQ8TCT0 537 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 PIWIL1Q96J94 861 aaKnown RBP5.87□□□□□ -1.47
VPS13D-201ENST00000011700 GPR22Q99680 433 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 STRADBQ9C0K7 418 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 RGPD3A6NKT7 1758 aaPredicted RBP5.87□□□□□ -1.47
VPS13D-201ENST00000011700 FOXE1O00358 373 aaPredicted RBP5.87□□□□□ -1.47
VPS13D-201ENST00000011700 SCAMP3O14828 347 aaKnown RBP5.87□□□□□ -1.47
VPS13D-201ENST00000011700 AHSA1O95433 338 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 ITPKAP23677 461 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 EXOSC6Q5RKV6 272 aaKnown RBP5.87□□□□□ -1.47
VPS13D-201ENST00000011700 UBXN11Q5T124 520 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 GJB7Q6PEY0 223 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 WDR88Q6ZMY6 472 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 SHFQ7M4L6 423 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 RGPD4Q7Z3J3 1758 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 MINDY1Q8N5J2 469 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 TRAM1L1Q8N609 369 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 ZMIZ2Q8NF64 920 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 NPLOC4Q8TAT6 608 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 DEDD2Q8WXF8 326 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 SFXN2Q96NB2 322 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 ZNF559Q9BR84 538 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 SMOC2Q9H3U7 446 aa5.87□□□□□ -1.47
VPS13D-201ENST00000011700 SLC35F4A4IF30 521 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 GJB1P08034 283 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 CREB1P16220 341 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 CERS1P27544 350 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 NRSN1Q8IZ57 195 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 FAM136AQ96C01 138 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 PYCR2Q96C36 320 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 RNF32Q9H0A6 362 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 KCNH6Q9H252 994 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 MTPAPQ9NVV4 582 aaKnown RBP eCLIP5.86□□□□□ -1.47
VPS13D-201ENST00000011700 HIF3AQ9Y2N7 669 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 PCDHGA8Q9Y5G5 932 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 ANKRD28O15084 1053 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 TNFSF4P23510 183 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 PEX2P28328 305 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 RBMS1P29558 406 aaKnown RBP5.86□□□□□ -1.47
VPS13D-201ENST00000011700 SHMT2P34897 504 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 SLC6A8P48029 635 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 GSCP56915 257 aaPredicted RBP5.86□□□□□ -1.47
VPS13D-201ENST00000011700 TAS2R30P59541 319 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 MSMO1Q15800 293 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 VASH1Q7L8A9 365 aaPredicted RBP5.86□□□□□ -1.47
VPS13D-201ENST00000011700 ALYREFQ86V81 257 aaKnown RBP5.86□□□□□ -1.47
VPS13D-201ENST00000011700 OR5L1Q8NGL2 311 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 OR1J4Q8NGS1 313 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 FANK1Q8TC84 345 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 BPIFB1Q8TDL5 484 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 SMAP2Q8WU79 429 aaPredicted RBP5.86□□□□□ -1.47
VPS13D-201ENST00000011700 OAZ3Q9UMX2 235 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 NENFQ9UMX5 172 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 HSPB11Q9Y547 144 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 ACOT7O00154 380 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 OR1F1O43749 312 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 FKTNO75072 461 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 ATP6V1G1O75348 118 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 SMIM10L2AP0DMW4 78 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 SMIM10L2BP0DMW5 78 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 PKLRP30613 574 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 TGFBR3Q03167 851 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 PRKCZQ05513 592 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 SPIN3Q5JUX0 258 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 PSRC1Q6PGN9 363 aaPredicted RBP5.86□□□□□ -1.47
VPS13D-201ENST00000011700 AMIGO2Q86SJ2 522 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 NPAS3Q8IXF0 933 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 JAGN1Q8N5M9 183 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 OR2T4Q8NH00 348 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 LGMNQ99538 433 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 PPA2Q9H2U2 334 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 DHDHQ9UQ10 334 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 SCN10AQ9Y5Y9 1956 aa5.86□□□□□ -1.47
VPS13D-201ENST00000011700 DLX3O60479 287 aa5.86□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms