RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 FUT1P19526 365 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 ATP5C1P36542 298 aaKnown RBP3.44□□□□□ -1.86
SCN1A-221ENST00000641996 BNIP3Q12983 259 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 AUHQ13825 339 aaKnown RBP3.44□□□□□ -1.86
SCN1A-221ENST00000641996 TMEM123Q8N131 208 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 MUC15Q8N387 334 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 KLHL6Q8WZ60 621 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 MED28Q9H204 178 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 SLCO1B3Q9NPD5 702 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 USP31Q70CQ4 1352 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 ZNF705FA8MVS1 300 aaPredicted RBP3.44□□□□□ -1.86
SCN1A-221ENST00000641996 K7ERI5 159 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 PTTG1O95997 202 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 ZNF705DP0CH99 300 aaPredicted RBP3.44□□□□□ -1.86
SCN1A-221ENST00000641996 ZNF705BP0CI00 300 aaPredicted RBP3.44□□□□□ -1.86
SCN1A-221ENST00000641996 UBA1P22314 1058 aaKnown RBP3.44□□□□□ -1.86
SCN1A-221ENST00000641996 TRHRP34981 398 aaPredicted RBP3.44□□□□□ -1.86
SCN1A-221ENST00000641996 GPC5P78333 572 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 ETFDHQ16134 617 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 DUOXA2Q1HG44 320 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 ERFEQ4G0M1 354 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 CLEC6AQ6EIG7 209 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 ESRP1Q6NXG1 681 aaKnown RBP3.44□□□□□ -1.86
SCN1A-221ENST00000641996 LARP4Q71RC2 724 aaKnown RBP eCLIP3.44□□□□□ -1.86
SCN1A-221ENST00000641996 ASCL2Q99929 193 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 NMNAT1Q9HAN9 279 aaPredicted RBP3.44□□□□□ -1.86
SCN1A-221ENST00000641996 GPATCH2Q9NW75 528 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 AGAP5A6NIR3 686 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 DUXAA6NLW8 204 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 EPHA2P29317 976 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 HCAR3P49019 387 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 ARG2P78540 354 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 ZNF543Q08ER8 600 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 CNTN1Q12860 1018 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 GTF2H3Q13889 308 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 ASCL4Q6XD76 172 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 ADGRD2Q7Z7M1 963 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 SYNE4Q8N205 404 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 FAM45AQ8TCE6 357 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 HGDQ93099 445 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 TOMM40LQ969M1 308 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 SLAMF9Q96A28 289 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 ZHX1-C8orf76Q96EF9 292 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 C20orf24Q9BUV8 137 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 GHRLQ9UBU3 117 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 ZNF212Q9UDV6 495 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 ZMYM6O95789 1325 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 PIEZO1Q92508 2521 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 SLC28A1O00337 649 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 ADAM12O43184 909 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 ATE1O95260 518 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 LATS1O95835 1130 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 AESQ08117 197 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 ASTE1Q2TB18 679 aaPredicted RBP3.44□□□□□ -1.86
SCN1A-221ENST00000641996 AGKQ53H12 422 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 TMEM81Q6P7N7 255 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 CENPLQ8N0S6 344 aaPredicted RBP3.44□□□□□ -1.86
SCN1A-221ENST00000641996 TCP10LQ8TDR4 215 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 C7orf34Q96L11 122 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 SFXN2Q96NB2 322 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 TIMP4Q99727 224 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 SCNM1Q9BWG6 230 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 UBXN6Q9BZV1 441 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 MKKSQ9NPJ1 570 aaPredicted RBP3.44□□□□□ -1.86
SCN1A-221ENST00000641996 MIEF1Q9NQG6 463 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 PALD1Q9ULE6 856 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 SLC27A6Q9Y2P4 619 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 POLQO75417 2590 aa3.44□□□□□ -1.86
SCN1A-221ENST00000641996 ARG1P05089 322 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 OR10J4P0C629 311 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 PCSK1P29120 753 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 CRHR1P34998 444 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 AGFG1P52594 562 aaKnown RBP3.43□□□□□ -1.86
SCN1A-221ENST00000641996 BST2Q10589 180 aaKnown RBP3.43□□□□□ -1.86
SCN1A-221ENST00000641996 MOGAT2Q3SYC2 334 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 RNF212Q495C1 297 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 HIST2H3PS2Q5TEC6 136 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 ZNF613Q6PF04 617 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 GADL1Q6ZQY3 521 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 AMZ2Q86W34 360 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 GHDCQ8N2G8 530 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 CLEC1AQ8NC01 280 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 OR52H1Q8NGJ2 320 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 OR52E1Q8NGJ3 308 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 THAP6Q8TBB0 222 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 SLC7A13Q8TCU3 470 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 PHF10Q8WUB8 498 aaKnown RBP3.43□□□□□ -1.86
SCN1A-221ENST00000641996 IP6K1Q92551 441 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 MED15Q96RN5 788 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 ALKBH7Q9BT30 221 aaPredicted RBP3.43□□□□□ -1.86
SCN1A-221ENST00000641996 PABPC3Q9H361 631 aaKnown RBP3.43□□□□□ -1.86
SCN1A-221ENST00000641996 PDGFCQ9NRA1 345 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 VPS54Q9P1Q0 977 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 KANSL3Q9P2N6 904 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 GPR160Q9UJ42 338 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 STUB1Q9UNE7 303 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 MYLKQ15746 1914 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 ALOX15BO15296 676 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 SERPINA7P05543 415 aa3.43□□□□□ -1.86
SCN1A-221ENST00000641996 UCP1P25874 307 aa3.43□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms