RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 IL3RAP26951 378 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 MAGEA11P43364 429 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 SOX9P48436 509 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 PTDSS1P48651 473 aaKnown RBP5.91□□□□□ -1.46
SCN1A-217ENST00000637988 LDB1Q86U70 411 aaPredicted RBP5.91□□□□□ -1.46
SCN1A-217ENST00000637988 FBXL16Q8N461 479 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 EID2Q8N6I1 236 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 PYDC1Q8WXC3 89 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 PKP4Q99569 1192 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 ZNF184Q99676 751 aaPredicted RBP5.91□□□□□ -1.46
SCN1A-217ENST00000637988 HIF1ANQ9NWT6 349 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 ZNF224Q9NZL3 707 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 CARD8Q9Y2G2 431 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 N4BP2Q86UW6 1770 aaPredicted RBP5.91□□□□□ -1.46
SCN1A-217ENST00000637988 A0A0U1RQJ8 604 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 TOR1AO14656 332 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 STK17BO94768 372 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 C4BPAP04003 597 aaKnown RBP5.91□□□□□ -1.46
SCN1A-217ENST00000637988 GDF1P27539 372 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 ACADVLP49748 655 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 ARHGAP1Q07960 439 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 PPP1R3BQ86XI6 285 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 AGBL5Q8NDL9 886 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 PROKR1Q8TCW9 393 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 COL21A1Q96P44 957 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 TFB2MQ9H5Q4 396 aaKnown RBP5.91□□□□□ -1.46
SCN1A-217ENST00000637988 LRRC19Q9H756 370 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 ERVK-5Q9HDB9 667 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 TESMINQ9Y4I5 508 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 PCDHGB6Q9Y5F9 930 aa5.91□□□□□ -1.46
SCN1A-217ENST00000637988 EEF1E1-BLOC1S5C9J1V9 151 aa5.9□□□□□ -1.46
SCN1A-217ENST00000637988 EEF1E1O43324 174 aaKnown RBP5.9□□□□□ -1.46
SCN1A-217ENST00000637988 PRAMEF2O60811 474 aa5.9□□□□□ -1.46
SCN1A-217ENST00000637988 SNAPC5O75971 98 aa5.9□□□□□ -1.46
SCN1A-217ENST00000637988 OAZ2O95190 189 aa5.9□□□□□ -1.46
SCN1A-217ENST00000637988 H1F0P07305 194 aaKnown RBP5.9□□□□□ -1.46
SCN1A-217ENST00000637988 MMP2P08253 660 aa5.9□□□□□ -1.46
SCN1A-217ENST00000637988 MMP8P22894 467 aa5.9□□□□□ -1.46
SCN1A-217ENST00000637988 LMO2P25791 158 aa5.9□□□□□ -1.46
SCN1A-217ENST00000637988 MAGEA8P43361 318 aa5.9□□□□□ -1.46
SCN1A-217ENST00000637988 TDGQ13569 410 aa5.9□□□□□ -1.46
SCN1A-217ENST00000637988 PTPRRQ15256 657 aa5.9□□□□□ -1.46
SCN1A-217ENST00000637988 DUOXA1Q1HG43 343 aa5.9□□□□□ -1.46
SCN1A-217ENST00000637988 TMEM110Q86TL2 294 aa5.9□□□□□ -1.46
SCN1A-217ENST00000637988 RNF175Q8N4F7 328 aa5.9□□□□□ -1.46
SCN1A-217ENST00000637988 POC1BQ8TC44 478 aa5.9□□□□□ -1.46
SCN1A-217ENST00000637988 HNRNPLLQ8WVV9 542 aaKnown RBP5.9□□□□□ -1.46
SCN1A-217ENST00000637988 ROPN1LQ96C74 230 aa5.9□□□□□ -1.46
SCN1A-217ENST00000637988 FBXL8Q96CD0 374 aa5.9□□□□□ -1.46
SCN1A-217ENST00000637988 TXN2Q99757 166 aa5.9□□□□□ -1.46
SCN1A-217ENST00000637988 CHST7Q9NS84 486 aa5.9□□□□□ -1.46
SCN1A-217ENST00000637988 NDRG3Q9UGV2 375 aa5.9□□□□□ -1.46
SCN1A-217ENST00000637988 MRPS2Q9Y399 296 aaKnown RBP5.9□□□□□ -1.46
SCN1A-217ENST00000637988 WDR45Q9Y484 360 aa5.9□□□□□ -1.46
SCN1A-217ENST00000637988 ATG2BQ96BY7 2078 aa5.9□□□□□ -1.46
SCN1A-217ENST00000637988 RGPD5Q99666 1765 aa5.9□□□□□ -1.46
SCN1A-217ENST00000637988 TCRBV9S1A1TA0A576 114 aa5.9□□□□□ -1.46
SCN1A-217ENST00000637988 C2orf71A6NGG8 1288 aa5.9□□□□□ -1.46
SCN1A-217ENST00000637988 PRRG2O14669 202 aa5.9□□□□□ -1.46
SCN1A-217ENST00000637988 ENTPD6O75354 484 aa5.9□□□□□ -1.46
SCN1A-217ENST00000637988 VNN2O95498 520 aa5.9□□□□□ -1.46
SCN1A-217ENST00000637988 AK1P00568 194 aa5.9□□□□□ -1.46
SCN1A-217ENST00000637988 BCHEP06276 602 aa5.9□□□□□ -1.46
SCN1A-217ENST00000637988 FMO1Q01740 532 aa5.9□□□□□ -1.46
SCN1A-217ENST00000637988 ZNF829Q3KNS6 432 aaPredicted RBP5.9□□□□□ -1.46
SCN1A-217ENST00000637988 TDHQ8IZJ6 230 aa5.9□□□□□ -1.46
SCN1A-217ENST00000637988 LRRC25Q8N386 305 aaPredicted RBP5.9□□□□□ -1.46
SCN1A-217ENST00000637988 HAS1Q92839 578 aa5.9□□□□□ -1.46
SCN1A-217ENST00000637988 S100A16Q96FQ6 103 aaKnown RBP5.9□□□□□ -1.46
SCN1A-217ENST00000637988 TXNDC15Q96J42 360 aa5.9□□□□□ -1.46
SCN1A-217ENST00000637988 NODALQ96S42 347 aa5.9□□□□□ -1.46
SCN1A-217ENST00000637988 MCOLN1Q9GZU1 580 aa5.9□□□□□ -1.46
SCN1A-217ENST00000637988 TPK1Q9H3S4 243 aa5.9□□□□□ -1.46
SCN1A-217ENST00000637988 CLK4Q9HAZ1 481 aaKnown RBP5.9□□□□□ -1.46
SCN1A-217ENST00000637988 RHBDL2Q9NX52 303 aa5.9□□□□□ -1.46
SCN1A-217ENST00000637988 HAS3O00219 553 aa5.9□□□□□ -1.46
SCN1A-217ENST00000637988 EPCAMP16422 314 aa5.9□□□□□ -1.46
SCN1A-217ENST00000637988 IRAK1P51617 712 aa5.9□□□□□ -1.46
SCN1A-217ENST00000637988 RPS13P62277 151 aaKnown RBP5.9□□□□□ -1.46
SCN1A-217ENST00000637988 MRPS21P82921 87 aaKnown RBP5.9□□□□□ -1.46
SCN1A-217ENST00000637988 KCNJ8Q15842 424 aa5.9□□□□□ -1.46
SCN1A-217ENST00000637988 BCL2L15Q5TBC7 163 aa5.9□□□□□ -1.46
SCN1A-217ENST00000637988 ZDHHC14Q8IZN3 488 aa5.9□□□□□ -1.46
SCN1A-217ENST00000637988 ZNF808Q8N4W9 903 aaPredicted RBP5.9□□□□□ -1.46
SCN1A-217ENST00000637988 LRRN4CLQ8ND94 238 aa5.9□□□□□ -1.46
SCN1A-217ENST00000637988 OR2T34Q8NGX1 318 aa5.9□□□□□ -1.46
SCN1A-217ENST00000637988 BORCS5Q969J3 196 aa5.9□□□□□ -1.46
SCN1A-217ENST00000637988 LRRC58Q96CX6 371 aa5.9□□□□□ -1.46
SCN1A-217ENST00000637988 URM1Q9BTM9 101 aaKnown RBP5.9□□□□□ -1.46
SCN1A-217ENST00000637988 THSD1Q9NS62 852 aa5.9□□□□□ -1.46
SCN1A-217ENST00000637988 TIMM22Q9Y584 194 aa5.9□□□□□ -1.46
SCN1A-217ENST00000637988 TIMM8BQ9Y5J9 83 aaPredicted RBP5.9□□□□□ -1.46
SCN1A-217ENST00000637988 MTMR11A4FU01 709 aa5.9□□□□□ -1.46
SCN1A-217ENST00000637988 H7C417 338 aa5.9□□□□□ -1.46
SCN1A-217ENST00000637988 B4GAT1O43505 415 aa5.9□□□□□ -1.46
SCN1A-217ENST00000637988 EDN1P05305 212 aa5.9□□□□□ -1.46
SCN1A-217ENST00000637988 CDH1P12830 882 aa5.9□□□□□ -1.46
SCN1A-217ENST00000637988 HTR3AP46098 478 aa5.9□□□□□ -1.46
SCN1A-217ENST00000637988 RRAS2P62070 204 aaPredicted RBP5.9□□□□□ -1.46
SCN1A-217ENST00000637988 MFSD13AQ14CX5 517 aa5.9□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms