RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 RUNDC3AQ59EK9 446 aa17.47■□□□□ 0.39
CLN3-254ENST00000637050 NDUFAF5Q5TEU4 345 aa17.47■□□□□ 0.39
CLN3-254ENST00000637050 C6orf163Q5TEZ5 329 aa17.47■□□□□ 0.39
CLN3-254ENST00000637050 C1orf146Q5VVC0 180 aa17.47■□□□□ 0.39
CLN3-254ENST00000637050 DNAJC14Q6Y2X3 702 aaPredicted RBP17.47■□□□□ 0.39
CLN3-254ENST00000637050 CLECL1Q8IZS7 167 aa17.47■□□□□ 0.39
CLN3-254ENST00000637050 FAM47BQ8NA70 645 aa17.47■□□□□ 0.39
CLN3-254ENST00000637050 PANX1Q96RD7 426 aa17.47■□□□□ 0.39
CLN3-254ENST00000637050 FAIM2Q9BWQ8 316 aa17.47■□□□□ 0.39
CLN3-254ENST00000637050 TAS2R7Q9NYW3 318 aa17.47■□□□□ 0.39
CLN3-254ENST00000637050 EHD3Q9NZN3 535 aa17.47■□□□□ 0.39
CLN3-254ENST00000637050 ERVK-11Q9UQG0 969 aa17.47■□□□□ 0.39
CLN3-254ENST00000637050 L3MBTL1Q9Y468 752 aa17.47■□□□□ 0.39
CLN3-254ENST00000637050 ATG4BQ9Y4P1 393 aa17.47■□□□□ 0.39
CLN3-254ENST00000637050 A0A1W2PR48 441 aa17.46■□□□□ 0.39
CLN3-254ENST00000637050 CASC3O15234 703 aaKnown RBP17.46■□□□□ 0.39
CLN3-254ENST00000637050 CTSBP07858 339 aa17.46■□□□□ 0.39
CLN3-254ENST00000637050 HSD17B1P14061 328 aa17.46■□□□□ 0.39
CLN3-254ENST00000637050 DDX5P17844 614 aaKnown RBP17.46■□□□□ 0.39
CLN3-254ENST00000637050 ZNF10P21506 573 aaPredicted RBP17.46■□□□□ 0.39
CLN3-254ENST00000637050 ATXN3P54252 364 aaPredicted RBP17.46■□□□□ 0.39
CLN3-254ENST00000637050 GTDC1Q4AE62 458 aa17.46■□□□□ 0.39
CLN3-254ENST00000637050 DBX2Q6ZNG2 339 aa17.46■□□□□ 0.39
CLN3-254ENST00000637050 NATD1Q8N6N6 113 aa17.46■□□□□ 0.39
CLN3-254ENST00000637050 NUDT22Q9BRQ3 303 aa17.46■□□□□ 0.39
CLN3-254ENST00000637050 STARD5Q9NSY2 213 aa17.46■□□□□ 0.39
CLN3-254ENST00000637050 SUCOQ9UBS9 1254 aaKnown RBP17.46■□□□□ 0.39
CLN3-254ENST00000637050 NIPSNAP3AQ9UFN0 247 aaPredicted RBP17.46■□□□□ 0.39
CLN3-254ENST00000637050 PCDHGB2Q9Y5G2 931 aa17.46■□□□□ 0.39
CLN3-254ENST00000637050 PROM1O43490 865 aa17.45■□□□□ 0.38
CLN3-254ENST00000637050 ALDH9A1P49189 494 aa17.45■□□□□ 0.38
CLN3-254ENST00000637050 EEFSECP57772 596 aaKnown RBP17.45■□□□□ 0.38
CLN3-254ENST00000637050 ACTR3P61158 418 aa17.45■□□□□ 0.38
CLN3-254ENST00000637050 HSD11B2P80365 405 aa17.45■□□□□ 0.38
CLN3-254ENST00000637050 TMEM71Q6P5X7 295 aa17.45■□□□□ 0.38
CLN3-254ENST00000637050 KMT5CQ86Y97 462 aa17.45■□□□□ 0.38
CLN3-254ENST00000637050 FAM156AQ8NDB6 213 aa17.45■□□□□ 0.38
CLN3-254ENST00000637050 GOT1L1Q8NHS2 421 aaPredicted RBP17.45■□□□□ 0.38
CLN3-254ENST00000637050 CIDECQ96AQ7 238 aaPredicted RBP17.45■□□□□ 0.38
CLN3-254ENST00000637050 SLC41A2Q96JW4 573 aa17.45■□□□□ 0.38
CLN3-254ENST00000637050 GBP5Q96PP8 586 aa17.45■□□□□ 0.38
CLN3-254ENST00000637050 PHF12Q96QT6 1004 aa17.45■□□□□ 0.38
CLN3-254ENST00000637050 MAPKAP1Q9BPZ7 522 aa17.45■□□□□ 0.38
CLN3-254ENST00000637050 ENAMQ9NRM1 1142 aa17.45■□□□□ 0.38
CLN3-254ENST00000637050 DNAAF2Q9NVR5 837 aaKnown RBP17.45■□□□□ 0.38
CLN3-254ENST00000637050 FBXW2Q9UKT8 454 aa17.45■□□□□ 0.38
CLN3-254ENST00000637050 A0A1W2PQM1 296 aa17.45■□□□□ 0.38
CLN3-254ENST00000637050 LNP1A1A4G5 178 aa17.45■□□□□ 0.38
CLN3-254ENST00000637050 TOX3O15405 576 aaPredicted RBP17.45■□□□□ 0.38
CLN3-254ENST00000637050 B3GALT2O43825 422 aa17.45■□□□□ 0.38
CLN3-254ENST00000637050 GALR3O60755 368 aaPredicted RBP17.45■□□□□ 0.38
CLN3-254ENST00000637050 ENTPD5O75356 428 aa17.45■□□□□ 0.38
CLN3-254ENST00000637050 GSNP06396 782 aa17.45■□□□□ 0.38
CLN3-254ENST00000637050 ZCCHC18P0CG32 403 aa17.45■□□□□ 0.38
CLN3-254ENST00000637050 EFNA1P20827 205 aaPredicted RBP17.45■□□□□ 0.38
CLN3-254ENST00000637050 MSX2P35548 267 aaPredicted RBP17.45■□□□□ 0.38
CLN3-254ENST00000637050 DUSP3P51452 185 aaPredicted RBP17.45■□□□□ 0.38
CLN3-254ENST00000637050 MTPNP58546 118 aa17.45■□□□□ 0.38
CLN3-254ENST00000637050 MS4A2Q01362 244 aa17.45■□□□□ 0.38
CLN3-254ENST00000637050 SELPLGQ14242 412 aa17.45■□□□□ 0.38
CLN3-254ENST00000637050 TRIM25Q14258 630 aaKnown RBP17.45■□□□□ 0.38
CLN3-254ENST00000637050 D2HGDHQ8N465 521 aa17.45■□□□□ 0.38
CLN3-254ENST00000637050 KLHL6Q8WZ60 621 aa17.45■□□□□ 0.38
CLN3-254ENST00000637050 ASB9Q96DX5 294 aa17.45■□□□□ 0.38
CLN3-254ENST00000637050 SH3GL1Q99961 368 aa17.45■□□□□ 0.38
CLN3-254ENST00000637050 CPPED1Q9BRF8 314 aaPredicted RBP17.45■□□□□ 0.38
CLN3-254ENST00000637050 KCMF1Q9P0J7 381 aa17.45■□□□□ 0.38
CLN3-254ENST00000637050 C1orf226A1L170 272 aa17.44■□□□□ 0.38
CLN3-254ENST00000637050 ACOT8O14734 319 aa17.44■□□□□ 0.38
CLN3-254ENST00000637050 ANP32DO95626 131 aa17.44■□□□□ 0.38
CLN3-254ENST00000637050 CPSF4O95639 269 aaKnown RBP17.44■□□□□ 0.38
CLN3-254ENST00000637050 AIFM1O95831 613 aa17.44■□□□□ 0.38
CLN3-254ENST00000637050 TCN1P20061 433 aaPredicted RBP17.44■□□□□ 0.38
CLN3-254ENST00000637050 FRKP42685 505 aaPredicted RBP17.44■□□□□ 0.38
CLN3-254ENST00000637050 CCL7P80098 99 aa17.44■□□□□ 0.38
CLN3-254ENST00000637050 LIPEQ05469 1076 aa17.44■□□□□ 0.38
CLN3-254ENST00000637050 RUNX2Q13950 521 aa17.44■□□□□ 0.38
CLN3-254ENST00000637050 TCTE1Q5JU00 501 aa17.44■□□□□ 0.38
CLN3-254ENST00000637050 FBXW10Q5XX13 1052 aa17.44■□□□□ 0.38
CLN3-254ENST00000637050 PRSS41Q7RTY9 318 aa17.44■□□□□ 0.38
CLN3-254ENST00000637050 PDSS2Q86YH6 399 aa17.44■□□□□ 0.38
CLN3-254ENST00000637050 C10orf67Q8IYJ2 551 aa17.44■□□□□ 0.38
CLN3-254ENST00000637050 UCN3Q969E3 161 aa17.44■□□□□ 0.38
CLN3-254ENST00000637050 LRRN3Q9H3W5 708 aa17.44■□□□□ 0.38
CLN3-254ENST00000637050 IKZF5Q9H5V7 419 aa17.44■□□□□ 0.38
CLN3-254ENST00000637050 LYRM4Q9HD34 91 aa17.44■□□□□ 0.38
CLN3-254ENST00000637050 PDP2Q9P2J9 529 aa17.44■□□□□ 0.38
CLN3-254ENST00000637050 GMPR2Q9P2T1 348 aaKnown RBP17.44■□□□□ 0.38
CLN3-254ENST00000637050 PHF11Q9UIL8 331 aa17.44■□□□□ 0.38
CLN3-254ENST00000637050 DAPP1Q9UN19 280 aa17.44■□□□□ 0.38
CLN3-254ENST00000637050 GOLGA4Q13439 2230 aaKnown RBP17.44■□□□□ 0.38
CLN3-254ENST00000637050 A0A1W2PRB8 838 aa17.43■□□□□ 0.38
CLN3-254ENST00000637050 DNAJA2O60884 412 aa17.43■□□□□ 0.38
CLN3-254ENST00000637050 CPNE6O95741 557 aa17.43■□□□□ 0.38
CLN3-254ENST00000637050 RPLP0P05388 317 aaKnown RBP17.43■□□□□ 0.38
CLN3-254ENST00000637050 RETP07949 1114 aa17.43■□□□□ 0.38
CLN3-254ENST00000637050 IL1RNP18510 177 aa17.43■□□□□ 0.38
CLN3-254ENST00000637050 GSK3BP49841 420 aa17.43■□□□□ 0.38
CLN3-254ENST00000637050 SEPHS1P49903 392 aa17.43■□□□□ 0.38
CLN3-254ENST00000637050 LIM2P55344 173 aa17.43■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms