RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 SYNDIG1Q9H7V2 258 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 IL26Q9NPH9 171 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 ELOVL2Q9NXB9 296 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 GPRC5BQ9NZH0 403 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 OSGIN1Q9UJX0 560 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 PNMA8BQ9ULN7 279 aaPredicted RBP3.82□□□□□ -1.8
SCN1A-214ENST00000637038 SSR3Q9UNL2 185 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 PADI2Q9Y2J8 665 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 KLK4Q9Y5K2 254 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 TRANK1O15050 2925 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 FAM172BPA6NC97 362 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 METTL15A6NJ78 407 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 CENPXA8MT69 81 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 HAT1O14929 419 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 GRM6O15303 877 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 RGS5O15539 181 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 BNIP3LO60238 219 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 FZD6O60353 706 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 CLDN7O95471 211 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 ATP1B2P14415 290 aaPredicted RBP3.82□□□□□ -1.8
SCN1A-214ENST00000637038 NDUFV2P19404 249 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 PSMA1P25786 263 aaKnown RBP3.82□□□□□ -1.8
SCN1A-214ENST00000637038 IFNGR2P38484 337 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 SLC15A1P46059 708 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 SLC11A1P49279 550 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 CDH12P55289 794 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 C21orf58P58505 322 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 ARF5P84085 180 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 RIPPLY1Q0D2K3 151 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 HYAL1Q12794 435 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 DNASE1L3Q13609 305 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 TSTA3Q13630 321 aaPredicted RBP3.82□□□□□ -1.8
SCN1A-214ENST00000637038 SCARB2Q14108 478 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 NKG7Q16617 165 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 SPDYE7PQ495Y7 208 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 MFSD4AQ8N468 514 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 RAB42Q8N4Z0 105 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 CLDN19Q8N6F1 224 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 GALNT6Q8NCL4 622 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 MTERF3Q96E29 417 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 OTUB1Q96FW1 271 aaPredicted RBP3.82□□□□□ -1.8
SCN1A-214ENST00000637038 MED8Q96G25 268 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 SLC30A2Q9BRI3 323 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 CHCHD6Q9BRQ6 235 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 INPP5KQ9BT40 448 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 KLF16Q9BXK1 252 aaPredicted RBP3.82□□□□□ -1.8
SCN1A-214ENST00000637038 SUV39H2Q9H5I1 410 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 MIEF1Q9NQG6 463 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 PSORS1C1Q9UIG5 152 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 PHF11Q9UIL8 331 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 ABCG2Q9UNQ0 655 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 IFT52Q9Y366 437 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 CAB39Q9Y376 341 aaPredicted RBP3.82□□□□□ -1.8
SCN1A-214ENST00000637038 RPL36Q9Y3U8 105 aaKnown RBP3.82□□□□□ -1.8
SCN1A-214ENST00000637038 CCL27Q9Y4X3 112 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 SCN5AQ14524 2016 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 CCRL2O00421 344 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 RNASET2O00584 256 aaKnown RBP3.82□□□□□ -1.8
SCN1A-214ENST00000637038 ARHGAP33O14559 1287 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 SLITRK5O94991 958 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 GADD45GO95257 159 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 PAHP00439 452 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 F11P03951 625 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 CKMP06732 381 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 MYL12AP19105 171 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 TGM1P22735 817 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 ELAVL4P26378 380 aaKnown RBP3.82□□□□□ -1.8
SCN1A-214ENST00000637038 PPP2R1BP30154 601 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 WEE1P30291 646 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 GSTM5P46439 218 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 SCN1BQ07699 218 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 NDUFA9Q16795 377 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 SYT16Q17RD7 645 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 CARD16Q5EG05 197 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 MPP7Q5T2T1 576 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 PDZK1Q5T2W1 519 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 DEPDC1Q5TB30 811 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 THOC7Q6I9Y2 204 aaKnown RBP3.82□□□□□ -1.8
SCN1A-214ENST00000637038 GRHL2Q6ISB3 625 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 TMPRSS11AQ6ZMR5 421 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 SLC46A3Q7Z3Q1 461 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 THOC6Q86W42 341 aaKnown RBP3.82□□□□□ -1.8
SCN1A-214ENST00000637038 GRAMD2AQ8IUY3 354 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 MSRB3Q8IXL7 192 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 CYP4Z2PQ8N1L4 340 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 KRT78Q8N1N4 520 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 CPA6Q8N4T0 437 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 DNAJC22Q8N4W6 341 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 TTC9BQ8N6N2 239 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 WDR36Q8NI36 951 aaKnown RBP3.82□□□□□ -1.8
SCN1A-214ENST00000637038 CAPSLQ8WWF8 208 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 KCNC2Q96PR1 638 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 LYSMD1Q96S90 227 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 CSF3RQ99062 836 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 PIP5K1AQ99755 562 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 TCF25Q9BQ70 676 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 SPATA5L1Q9BVQ7 753 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 HERC2P3Q9BVR0 1158 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 EBPLQ9BY08 206 aa3.82□□□□□ -1.8
SCN1A-214ENST00000637038 GPR62Q9BZJ7 368 aa3.82□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms