RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 hCG_1809904A0A1W2PP81 198 aa1.74□□□□□ -2.13
SCN1A-208ENST00000625916 A0A1W2PPE2 198 aa1.74□□□□□ -2.13
SCN1A-208ENST00000625916 A0A1W2PR64 198 aa1.74□□□□□ -2.13
SCN1A-208ENST00000625916 TCRBV21S2A2A0A5A6 115 aa1.74□□□□□ -2.13
SCN1A-208ENST00000625916 ANHXE9PGG2 379 aa1.74□□□□□ -2.13
SCN1A-208ENST00000625916 MLNRO43193 412 aa1.74□□□□□ -2.13
SCN1A-208ENST00000625916 SH3BP5O60239 455 aa1.74□□□□□ -2.13
SCN1A-208ENST00000625916 ZNF861PO60384 105 aa1.74□□□□□ -2.13
SCN1A-208ENST00000625916 OR9G9P0C7N8 305 aa1.74□□□□□ -2.13
SCN1A-208ENST00000625916 DLATP10515 647 aaKnown RBP1.74□□□□□ -2.13
SCN1A-208ENST00000625916 VDRP11473 427 aa1.74□□□□□ -2.13
SCN1A-208ENST00000625916 ACTN2P35609 894 aa1.74□□□□□ -2.13
SCN1A-208ENST00000625916 LINC00315P59091 139 aa1.74□□□□□ -2.13
SCN1A-208ENST00000625916 GSTO1P78417 241 aa1.74□□□□□ -2.13
SCN1A-208ENST00000625916 LRRC63Q05C16 580 aa1.74□□□□□ -2.13
SCN1A-208ENST00000625916 IL10RBQ08334 325 aa1.74□□□□□ -2.13
SCN1A-208ENST00000625916 ACSM1Q08AH1 577 aa1.74□□□□□ -2.13
SCN1A-208ENST00000625916 BECN1Q14457 450 aa1.74□□□□□ -2.13
SCN1A-208ENST00000625916 MAPK11Q15759 364 aa1.74□□□□□ -2.13
SCN1A-208ENST00000625916 HYIQ5T013 277 aa1.74□□□□□ -2.13
SCN1A-208ENST00000625916 CROCCP3Q8IVE0 287 aa1.74□□□□□ -2.13
SCN1A-208ENST00000625916 MFN1Q8IWA4 741 aa1.74□□□□□ -2.13
SCN1A-208ENST00000625916 SAMD12Q8N8I0 201 aa1.74□□□□□ -2.13
SCN1A-208ENST00000625916 VN1R17PQ8TDU5 208 aa1.74□□□□□ -2.13
SCN1A-208ENST00000625916 APOL6Q9BWW8 343 aa1.74□□□□□ -2.13
SCN1A-208ENST00000625916 MRGBPQ9NV56 204 aa1.74□□□□□ -2.13
SCN1A-208ENST00000625916 NSMCE4AQ9NXX6 385 aa1.74□□□□□ -2.13
SCN1A-208ENST00000625916 TMOD3Q9NYL9 352 aa1.74□□□□□ -2.13
SCN1A-208ENST00000625916 CLIC5Q9NZA1 410 aa1.74□□□□□ -2.13
SCN1A-208ENST00000625916 CHORDC1Q9UHD1 332 aaPredicted RBP1.74□□□□□ -2.13
SCN1A-208ENST00000625916 RPS6KA6Q9UK32 745 aa1.74□□□□□ -2.13
SCN1A-208ENST00000625916 NACAE9PAV3 2078 aa1.73□□□□□ -2.13
SCN1A-208ENST00000625916 TRAV18A0A075B6X5 111 aa1.73□□□□□ -2.13
SCN1A-208ENST00000625916 TRIM49D1C9J1S8 452 aa1.73□□□□□ -2.13
SCN1A-208ENST00000625916 MCF2LO15068 1137 aa1.73□□□□□ -2.13
SCN1A-208ENST00000625916 PGRMC2O15173 223 aa1.73□□□□□ -2.13
SCN1A-208ENST00000625916 GFPT2O94808 682 aa1.73□□□□□ -2.13
SCN1A-208ENST00000625916 IGHG3P01860 377 aa1.73□□□□□ -2.13
SCN1A-208ENST00000625916 OR52Z1P0C646 297 aa1.73□□□□□ -2.13
SCN1A-208ENST00000625916 SSTR1P30872 391 aa1.73□□□□□ -2.13
SCN1A-208ENST00000625916 NNMTP40261 264 aa1.73□□□□□ -2.13
SCN1A-208ENST00000625916 CSE1LP55060 971 aaKnown RBP1.73□□□□□ -2.13
SCN1A-208ENST00000625916 BACE1P56817 501 aa1.73□□□□□ -2.13
SCN1A-208ENST00000625916 PAX2Q02962 417 aa1.73□□□□□ -2.13
SCN1A-208ENST00000625916 TLE4Q04727 773 aa1.73□□□□□ -2.13
SCN1A-208ENST00000625916 RBPJQ06330 500 aa1.73□□□□□ -2.13
SCN1A-208ENST00000625916 CNTN1Q12860 1018 aa1.73□□□□□ -2.13
SCN1A-208ENST00000625916 SIM2Q14190 667 aaPredicted RBP1.73□□□□□ -2.13
SCN1A-208ENST00000625916 EBI3Q14213 229 aa1.73□□□□□ -2.13
SCN1A-208ENST00000625916 BMP2KLQ5H9B9 411 aa1.73□□□□□ -2.13
SCN1A-208ENST00000625916 WDR78Q5VTH9 848 aa1.73□□□□□ -2.13
SCN1A-208ENST00000625916 SPATA1Q5VX52 437 aa1.73□□□□□ -2.13
SCN1A-208ENST00000625916 NEPROQ6NW34 567 aa1.73□□□□□ -2.13
SCN1A-208ENST00000625916 MZT2BQ6NZ67 158 aa1.73□□□□□ -2.13
SCN1A-208ENST00000625916 ENPP7Q6UWV6 458 aa1.73□□□□□ -2.13
SCN1A-208ENST00000625916 CCDC71Q8IV32 467 aaPredicted RBP1.73□□□□□ -2.13
SCN1A-208ENST00000625916 CAMKVQ8NCB2 501 aa1.73□□□□□ -2.13
SCN1A-208ENST00000625916 GRK7Q8WTQ7 553 aa1.73□□□□□ -2.13
SCN1A-208ENST00000625916 P2RX5Q93086 422 aa1.73□□□□□ -2.13
SCN1A-208ENST00000625916 EXOC4Q96A65 974 aa1.73□□□□□ -2.13
SCN1A-208ENST00000625916 SPSB1Q96BD6 273 aa1.73□□□□□ -2.13
SCN1A-208ENST00000625916 SGF29Q96ES7 293 aa1.73□□□□□ -2.13
SCN1A-208ENST00000625916 SPATA33Q96N06 139 aa1.73□□□□□ -2.13
SCN1A-208ENST00000625916 ZNF184Q99676 751 aaPredicted RBP1.73□□□□□ -2.13
SCN1A-208ENST00000625916 GTPBP2Q9BX10 602 aaKnown RBP1.73□□□□□ -2.13
SCN1A-208ENST00000625916 NACAP1Q9BZK3 213 aa1.73□□□□□ -2.13
SCN1A-208ENST00000625916 CUEDC2Q9H467 287 aa1.73□□□□□ -2.13
SCN1A-208ENST00000625916 KLRF1Q9NZS2 232 aa1.73□□□□□ -2.13
SCN1A-208ENST00000625916 SH3GLB1Q9Y371 365 aa1.73□□□□□ -2.13
SCN1A-208ENST00000625916 MAGED1Q9Y5V3 778 aaPredicted RBP1.73□□□□□ -2.13
SCN1A-208ENST00000625916 SNX8Q9Y5X2 465 aa1.73□□□□□ -2.13
SCN1A-208ENST00000625916 TNRQ92752 1358 aa1.72□□□□□ -2.13
SCN1A-208ENST00000625916 A0A1W2PPW3 197 aa1.72□□□□□ -2.13
SCN1A-208ENST00000625916 A0A1W2PQ67 120 aa1.72□□□□□ -2.13
SCN1A-208ENST00000625916 TMEM150CB9EJG8 249 aa1.72□□□□□ -2.13
SCN1A-208ENST00000625916 GPAA1O43292 621 aa1.72□□□□□ -2.13
SCN1A-208ENST00000625916 SPRY1O43609 319 aaPredicted RBP1.72□□□□□ -2.13
SCN1A-208ENST00000625916 LUC7L3O95232 432 aaKnown RBP1.72□□□□□ -2.13
SCN1A-208ENST00000625916 CELF2O95319 508 aaKnown RBP1.72□□□□□ -2.13
SCN1A-208ENST00000625916 EEF2P13639 858 aaKnown RBP1.72□□□□□ -2.13
SCN1A-208ENST00000625916 PPP2R1AP30153 589 aa1.72□□□□□ -2.13
SCN1A-208ENST00000625916 SLC1A3P43003 542 aa1.72□□□□□ -2.13
SCN1A-208ENST00000625916 OR3A3P47888 321 aa1.72□□□□□ -2.13
SCN1A-208ENST00000625916 PSG7Q13046 419 aa1.72□□□□□ -2.13
SCN1A-208ENST00000625916 SNTB1Q13884 538 aaKnown RBP1.72□□□□□ -2.13
SCN1A-208ENST00000625916 PPP1R3AQ16821 1122 aa1.72□□□□□ -2.13
SCN1A-208ENST00000625916 KRTAP21-2Q3LI59 83 aa1.72□□□□□ -2.13
SCN1A-208ENST00000625916 MOXD1Q6UVY6 613 aa1.72□□□□□ -2.13
SCN1A-208ENST00000625916 ABRAXAS1Q6UWZ7 409 aa1.72□□□□□ -2.13
SCN1A-208ENST00000625916 C2orf66Q6UXQ4 117 aa1.72□□□□□ -2.13
SCN1A-208ENST00000625916 RFPL4BQ6ZWI9 263 aa1.72□□□□□ -2.13
SCN1A-208ENST00000625916 ZNF561Q8N587 486 aa1.72□□□□□ -2.13
SCN1A-208ENST00000625916 POMGNT2Q8NAT1 580 aa1.72□□□□□ -2.13
SCN1A-208ENST00000625916 SMPDL3AQ92484 453 aa1.72□□□□□ -2.13
SCN1A-208ENST00000625916 C10orf88Q9H8K7 445 aa1.72□□□□□ -2.13
SCN1A-208ENST00000625916 AMBNQ9NP70 447 aa1.72□□□□□ -2.13
SCN1A-208ENST00000625916 SENP1Q9P0U3 644 aa1.72□□□□□ -2.13
SCN1A-208ENST00000625916 RCOR3Q9P2K3 495 aaPredicted RBP1.72□□□□□ -2.13
SCN1A-208ENST00000625916 ANAPC2Q9UJX6 822 aa1.72□□□□□ -2.13
SCN1A-208ENST00000625916 RNF24Q9Y225 148 aa1.72□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms