RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 WDR75Q8IWA0 830 aaKnown RBP18.61■□□□□ 0.57
UPF3A-211ENST00000618700 ENDOVQ8N8Q3 282 aaKnown RBP18.61■□□□□ 0.57
UPF3A-211ENST00000618700 KDF1Q8NAX2 398 aaPredicted RBP18.61■□□□□ 0.57
UPF3A-211ENST00000618700 STT3BQ8TCJ2 826 aa18.61■□□□□ 0.57
UPF3A-211ENST00000618700 FCRL1Q96LA6 429 aa18.61■□□□□ 0.57
UPF3A-211ENST00000618700 OR1F2PQ96R84 312 aa18.61■□□□□ 0.57
UPF3A-211ENST00000618700 SPSB2Q99619 263 aa18.61■□□□□ 0.57
UPF3A-211ENST00000618700 NUF2Q9BZD4 464 aa18.61■□□□□ 0.57
UPF3A-211ENST00000618700 DPH1Q9BZG8 443 aa18.61■□□□□ 0.57
UPF3A-211ENST00000618700 LRTM1Q9HBL6 345 aa18.61■□□□□ 0.57
UPF3A-211ENST00000618700 PFDN4Q9NQP4 134 aa18.61■□□□□ 0.57
UPF3A-211ENST00000618700 RIC8BQ9NVN3 520 aa18.61■□□□□ 0.57
UPF3A-211ENST00000618700 C1orf109Q9NX04 203 aa18.61■□□□□ 0.57
UPF3A-211ENST00000618700 GPN3Q9UHW5 284 aaPredicted RBP18.61■□□□□ 0.57
UPF3A-211ENST00000618700 MCM8Q9UJA3 840 aa18.61■□□□□ 0.57
UPF3A-211ENST00000618700 NXT1Q9UKK6 140 aaKnown RBP18.61■□□□□ 0.57
UPF3A-211ENST00000618700 DMXL2Q8TDJ6 3036 aa18.61■□□□□ 0.57
UPF3A-211ENST00000618700 MAP1BP46821 2468 aaKnown RBP18.6■□□□□ 0.57
UPF3A-211ENST00000618700 ATP6AP2A0A1C7CYW4 349 aa18.6■□□□□ 0.57
UPF3A-211ENST00000618700 ZNF195O14628 629 aa18.6■□□□□ 0.57
UPF3A-211ENST00000618700 ATP6AP2O75787 350 aa18.6■□□□□ 0.57
UPF3A-211ENST00000618700 KLF7O75840 302 aaPredicted RBP18.6■□□□□ 0.57
UPF3A-211ENST00000618700 BMP10O95393 424 aa18.6■□□□□ 0.57
UPF3A-211ENST00000618700 GBAP04062 536 aa18.6■□□□□ 0.57
UPF3A-211ENST00000618700 KLK1P06870 262 aa18.6■□□□□ 0.57
UPF3A-211ENST00000618700 CD63P08962 238 aa18.6■□□□□ 0.57
UPF3A-211ENST00000618700 LIFP15018 202 aa18.6■□□□□ 0.57
UPF3A-211ENST00000618700 ALOX15P16050 662 aaPredicted RBP18.6■□□□□ 0.57
UPF3A-211ENST00000618700 IL10P22301 178 aa18.6■□□□□ 0.57
UPF3A-211ENST00000618700 PTPN4P29074 926 aa18.6■□□□□ 0.57
UPF3A-211ENST00000618700 TIA1P31483 386 aaKnown RBP eCLIP18.6■□□□□ 0.57
UPF3A-211ENST00000618700 EIF2S3P41091 472 aaKnown RBP18.6■□□□□ 0.57
UPF3A-211ENST00000618700 XCR1P46094 333 aa18.6■□□□□ 0.57
UPF3A-211ENST00000618700 HNRNPH2P55795 449 aaKnown RBP18.6■□□□□ 0.57
UPF3A-211ENST00000618700 RAB38P57729 211 aa18.6■□□□□ 0.57
UPF3A-211ENST00000618700 SLAMF1Q13291 335 aa18.6■□□□□ 0.57
UPF3A-211ENST00000618700 ST3GAL2Q16842 350 aa18.6■□□□□ 0.57
UPF3A-211ENST00000618700 VASH2Q86V25 355 aa18.6■□□□□ 0.57
UPF3A-211ENST00000618700 ADAMTS18Q8TE60 1221 aa18.6■□□□□ 0.57
UPF3A-211ENST00000618700 ZCCHC14Q8WYQ9 949 aaKnown RBP18.6■□□□□ 0.57
UPF3A-211ENST00000618700 KIAA1143Q96AT1 154 aaPredicted RBP18.6■□□□□ 0.57
UPF3A-211ENST00000618700 PEX11GQ96HA9 241 aa18.6■□□□□ 0.57
UPF3A-211ENST00000618700 NAF1Q96HR8 494 aaKnown RBP18.6■□□□□ 0.57
UPF3A-211ENST00000618700 PPP3R2Q96LZ3 170 aa18.6■□□□□ 0.57
UPF3A-211ENST00000618700 MAPKAP1Q9BPZ7 522 aa18.6■□□□□ 0.57
UPF3A-211ENST00000618700 GPR87Q9BY21 358 aa18.6■□□□□ 0.57
UPF3A-211ENST00000618700 LYARQ9NX58 379 aaKnown RBP18.6■□□□□ 0.57
UPF3A-211ENST00000618700 GIMAP2Q9UG22 337 aa18.6■□□□□ 0.57
UPF3A-211ENST00000618700 FARSAQ9Y285 508 aaKnown RBP18.6■□□□□ 0.57
UPF3A-211ENST00000618700 ASB4Q9Y574 426 aa18.6■□□□□ 0.57
UPF3A-211ENST00000618700 CELSR3Q9NYQ7 3312 aa18.6■□□□□ 0.57
UPF3A-211ENST00000618700 NUP210LQ5VU65 1888 aa18.59■□□□□ 0.57
UPF3A-211ENST00000618700 TPRP12270 2363 aaKnown RBP18.59■□□□□ 0.57
UPF3A-211ENST00000618700 CYR61O00622 381 aa18.59■□□□□ 0.57
UPF3A-211ENST00000618700 SDHDO14521 159 aa18.59■□□□□ 0.57
UPF3A-211ENST00000618700 PCDH7O60245 1069 aa18.59■□□□□ 0.57
UPF3A-211ENST00000618700 ZGLP1P0C6A0 271 aa18.59■□□□□ 0.57
UPF3A-211ENST00000618700 FAM58BPP0C7Q3 252 aa18.59■□□□□ 0.57
UPF3A-211ENST00000618700 PRR35P0CG20 571 aa18.59■□□□□ 0.57
UPF3A-211ENST00000618700 FOXL2P58012 376 aa18.59■□□□□ 0.57
UPF3A-211ENST00000618700 OCA2Q04671 838 aa18.59■□□□□ 0.57
UPF3A-211ENST00000618700 VWA2Q5GFL6 755 aa18.59■□□□□ 0.57
UPF3A-211ENST00000618700 CCNYL2Q5T2Q4 361 aa18.59■□□□□ 0.57
UPF3A-211ENST00000618700 CYP20A1Q6UW02 462 aa18.59■□□□□ 0.57
UPF3A-211ENST00000618700 PROSER1Q86XN7 944 aa18.59■□□□□ 0.57
UPF3A-211ENST00000618700 TMEM151BQ8IW70 566 aa18.59■□□□□ 0.57
UPF3A-211ENST00000618700 OR2Y1Q8NGV0 311 aa18.59■□□□□ 0.57
UPF3A-211ENST00000618700 TBC1D20Q96BZ9 403 aa18.59■□□□□ 0.57
UPF3A-211ENST00000618700 TUBGCP3Q96CW5 907 aa18.59■□□□□ 0.57
UPF3A-211ENST00000618700 MAELQ96JY0 434 aaKnown RBP18.59■□□□□ 0.57
UPF3A-211ENST00000618700 CSF3RQ99062 836 aa18.59■□□□□ 0.57
UPF3A-211ENST00000618700 RBCK1Q9BYM8 510 aa18.59■□□□□ 0.57
UPF3A-211ENST00000618700 GPN2Q9H9Y4 310 aaPredicted RBP18.59■□□□□ 0.57
UPF3A-211ENST00000618700 LANCL2Q9NS86 450 aa18.59■□□□□ 0.57
UPF3A-211ENST00000618700 IL17BQ9UHF5 180 aa18.59■□□□□ 0.57
UPF3A-211ENST00000618700 PHF11Q9UIL8 331 aa18.59■□□□□ 0.57
UPF3A-211ENST00000618700 KCND3Q9UK17 655 aa18.59■□□□□ 0.57
UPF3A-211ENST00000618700 TCFL5Q9UL49 500 aa18.59■□□□□ 0.57
UPF3A-211ENST00000618700 TMED5Q9Y3A6 229 aa18.59■□□□□ 0.57
UPF3A-211ENST00000618700 USH1CQ9Y6N9 552 aa18.59■□□□□ 0.57
UPF3A-211ENST00000618700 ARHGAP10A1A4S6 786 aa18.58■□□□□ 0.56
UPF3A-211ENST00000618700 TRPC5OSA6NMA1 111 aa18.58■□□□□ 0.56
UPF3A-211ENST00000618700 SEC22BO75396 215 aa18.58■□□□□ 0.56
UPF3A-211ENST00000618700 JRKO75564 520 aa18.58■□□□□ 0.56
UPF3A-211ENST00000618700 FHP07954 510 aa18.58■□□□□ 0.56
UPF3A-211ENST00000618700 EFNA3P52797 238 aa18.58■□□□□ 0.56
UPF3A-211ENST00000618700 MAPK12P53778 367 aa18.58■□□□□ 0.56
UPF3A-211ENST00000618700 RPS18P62269 152 aaKnown RBP18.58■□□□□ 0.56
UPF3A-211ENST00000618700 RPS15P62841 145 aaKnown RBP18.58■□□□□ 0.56
UPF3A-211ENST00000618700 TRA2BP62995 288 aaKnown RBP18.58■□□□□ 0.56
UPF3A-211ENST00000618700 SRSF6Q13247 344 aaKnown RBP18.58■□□□□ 0.56
UPF3A-211ENST00000618700 GALNTL6Q49A17 601 aa18.58■□□□□ 0.56
UPF3A-211ENST00000618700 ATP6AP1LQ52LC2 224 aa18.58■□□□□ 0.56
UPF3A-211ENST00000618700 RFTN2Q52LD8 501 aaPredicted RBP18.58■□□□□ 0.56
UPF3A-211ENST00000618700 C6orf136Q5SQH8 315 aa18.58■□□□□ 0.56
UPF3A-211ENST00000618700 NOXRED1Q6NXP6 359 aa18.58■□□□□ 0.56
UPF3A-211ENST00000618700 GPR180Q86V85 440 aa18.58■□□□□ 0.56
UPF3A-211ENST00000618700 LRRC34Q8IZ02 419 aa18.58■□□□□ 0.56
UPF3A-211ENST00000618700 FAM47BQ8NA70 645 aa18.58■□□□□ 0.56
UPF3A-211ENST00000618700 MIEF2Q96C03 454 aa18.58■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms