RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 CUL3Q13618 768 aa14.29□□□□□ -0.12
LIG1-219ENST00000600055 PCLAFQ15004 111 aa14.29□□□□□ -0.12
LIG1-219ENST00000600055 CEP85LQ5SZL2 805 aa14.29□□□□□ -0.12
LIG1-219ENST00000600055 VWA5B1Q5TIE3 1220 aa14.29□□□□□ -0.12
LIG1-219ENST00000600055 QSOX2Q6ZRP7 698 aa14.29□□□□□ -0.12
LIG1-219ENST00000600055 GPRIN3Q6ZVF9 776 aa14.29□□□□□ -0.12
LIG1-219ENST00000600055 CLNKQ7Z7G1 428 aa14.29□□□□□ -0.12
LIG1-219ENST00000600055 KBTBD2Q8IY47 623 aa14.29□□□□□ -0.12
LIG1-219ENST00000600055 RDH11Q8TC12 318 aa14.29□□□□□ -0.12
LIG1-219ENST00000600055 TCP10LQ8TDR4 215 aa14.29□□□□□ -0.12
LIG1-219ENST00000600055 FAM111AQ96PZ2 611 aa14.29□□□□□ -0.12
LIG1-219ENST00000600055 KCNA7Q96RP8 456 aa14.29□□□□□ -0.12
LIG1-219ENST00000600055 HBEGFQ99075 208 aa14.29□□□□□ -0.12
LIG1-219ENST00000600055 LHPPQ9H008 270 aa14.29□□□□□ -0.12
LIG1-219ENST00000600055 IQCGQ9H095 443 aaKnown RBP14.29□□□□□ -0.12
LIG1-219ENST00000600055 ELOVL6Q9H5J4 265 aa14.29□□□□□ -0.12
LIG1-219ENST00000600055 PRDM9Q9NQV7 894 aa14.29□□□□□ -0.12
LIG1-219ENST00000600055 PRTFDC1Q9NRG1 225 aa14.29□□□□□ -0.12
LIG1-219ENST00000600055 RIC8BQ9NVN3 520 aa14.29□□□□□ -0.12
LIG1-219ENST00000600055 OXSMQ9NWU1 459 aa14.29□□□□□ -0.12
LIG1-219ENST00000600055 PSD3Q9NYI0 1048 aa14.29□□□□□ -0.12
LIG1-219ENST00000600055 C19orf25Q9UFG5 118 aaPredicted RBP14.29□□□□□ -0.12
LIG1-219ENST00000600055 FBXW2Q9UKT8 454 aa14.29□□□□□ -0.12
LIG1-219ENST00000600055 G3BP2Q9UN86 482 aaKnown RBP14.29□□□□□ -0.12
LIG1-219ENST00000600055 ZNF451Q9Y4E5 1061 aa14.29□□□□□ -0.12
LIG1-219ENST00000600055 BSNQ9UPA5 3926 aa14.29□□□□□ -0.12
LIG1-219ENST00000600055 BOD1L1Q8NFC6 3051 aa14.28□□□□□ -0.12
LIG1-219ENST00000600055 IGKV3D-11A0A0A0MRZ8 115 aa14.28□□□□□ -0.12
LIG1-219ENST00000600055 A8MUA0 341 aa14.28□□□□□ -0.12
LIG1-219ENST00000600055 MANBAO00462 879 aa14.28□□□□□ -0.12
LIG1-219ENST00000600055 RGS16O15492 202 aaPredicted RBP14.28□□□□□ -0.12
LIG1-219ENST00000600055 ERLIN1O75477 346 aa14.28□□□□□ -0.12
LIG1-219ENST00000600055 MLYCDO95822 493 aa14.28□□□□□ -0.12
LIG1-219ENST00000600055 ITGAMP11215 1152 aa14.28□□□□□ -0.12
LIG1-219ENST00000600055 BEND6Q5SZJ8 279 aaPredicted RBP14.28□□□□□ -0.12
LIG1-219ENST00000600055 PAPD4Q6PIY7 484 aaKnown RBP14.28□□□□□ -0.12
LIG1-219ENST00000600055 SCUBE1Q8IWY4 988 aa14.28□□□□□ -0.12
LIG1-219ENST00000600055 MYRIPQ8NFW9 859 aa14.28□□□□□ -0.12
LIG1-219ENST00000600055 BRIX1Q8TDN6 353 aaKnown RBP14.28□□□□□ -0.12
LIG1-219ENST00000600055 AGAP11Q8TF27 550 aa14.28□□□□□ -0.12
LIG1-219ENST00000600055 SELENOMQ8WWX9 145 aa14.28□□□□□ -0.12
LIG1-219ENST00000600055 MAGEB10Q96LZ2 347 aaPredicted RBP14.28□□□□□ -0.12
LIG1-219ENST00000600055 SMC6Q96SB8 1091 aa14.28□□□□□ -0.12
LIG1-219ENST00000600055 SERPINI1Q99574 410 aa14.28□□□□□ -0.12
LIG1-219ENST00000600055 CENPKQ9BS16 269 aa14.28□□□□□ -0.12
LIG1-219ENST00000600055 TUBB6Q9BUF5 446 aa14.28□□□□□ -0.12
LIG1-219ENST00000600055 MFRPQ9BY79 579 aa14.28□□□□□ -0.12
LIG1-219ENST00000600055 CENPHQ9H3R5 247 aa14.28□□□□□ -0.12
LIG1-219ENST00000600055 LYRM4Q9HD34 91 aa14.28□□□□□ -0.12
LIG1-219ENST00000600055 MID1IP1Q9NPA3 183 aa14.28□□□□□ -0.12
LIG1-219ENST00000600055 PPT2Q9UMR5 302 aa14.28□□□□□ -0.12
LIG1-219ENST00000600055 SNX6Q9UNH7 406 aa14.28□□□□□ -0.12
LIG1-219ENST00000600055 TIMM22Q9Y584 194 aa14.28□□□□□ -0.12
LIG1-219ENST00000600055 CLDN16Q9Y5I7 305 aa14.28□□□□□ -0.12
LIG1-219ENST00000600055 TNRC6AQ8NDV7 1962 aaKnown RBP14.27□□□□□ -0.12
LIG1-219ENST00000600055 NUP210LQ5VU65 1888 aa14.27□□□□□ -0.12
LIG1-219ENST00000600055 A0A0A6YYD5 115 aa14.27□□□□□ -0.13
LIG1-219ENST00000600055 TCRBV16S1A1N1A0A5B0 115 aa14.27□□□□□ -0.13
LIG1-219ENST00000600055 TMPRSS11DO60235 418 aa14.27□□□□□ -0.13
LIG1-219ENST00000600055 GBAP04062 536 aa14.27□□□□□ -0.13
LIG1-219ENST00000600055 SERPINA7P05543 415 aa14.27□□□□□ -0.13
LIG1-219ENST00000600055 CPN2P22792 545 aa14.27□□□□□ -0.13
LIG1-219ENST00000600055 PPP2R1BP30154 601 aa14.27□□□□□ -0.13
LIG1-219ENST00000600055 ALDH3A1P30838 453 aa14.27□□□□□ -0.13
LIG1-219ENST00000600055 CD97P48960 835 aa14.27□□□□□ -0.13
LIG1-219ENST00000600055 HTR6P50406 440 aa14.27□□□□□ -0.13
LIG1-219ENST00000600055 FOXA1P55317 472 aa14.27□□□□□ -0.13
LIG1-219ENST00000600055 PKNOX1P55347 436 aa14.27□□□□□ -0.13
LIG1-219ENST00000600055 HNRNPH2P55795 449 aaKnown RBP14.27□□□□□ -0.13
LIG1-219ENST00000600055 BTBD16Q32M84 506 aa14.27□□□□□ -0.13
LIG1-219ENST00000600055 NADK2Q4G0N4 442 aa14.27□□□□□ -0.13
LIG1-219ENST00000600055 LIPMQ5VYY2 423 aa14.27□□□□□ -0.13
LIG1-219ENST00000600055 FRMD7Q6ZUT3 714 aa14.27□□□□□ -0.13
LIG1-219ENST00000600055 ZNF595Q8IYB9 648 aa14.27□□□□□ -0.13
LIG1-219ENST00000600055 ZCCHC7Q8N3Z6 543 aaKnown RBP14.27□□□□□ -0.13
LIG1-219ENST00000600055 SIRT6Q8N6T7 355 aa14.27□□□□□ -0.13
LIG1-219ENST00000600055 EFCAB3Q8N7B9 438 aa14.27□□□□□ -0.13
LIG1-219ENST00000600055 RBMXL3Q8N7X1 1067 aaKnown RBP14.27□□□□□ -0.13
LIG1-219ENST00000600055 METTL6Q8TCB7 284 aa14.27□□□□□ -0.13
LIG1-219ENST00000600055 ADAMTS18Q8TE60 1221 aa14.27□□□□□ -0.13
LIG1-219ENST00000600055 PSMF1Q92530 271 aa14.27□□□□□ -0.13
LIG1-219ENST00000600055 MECRQ9BV79 373 aa14.27□□□□□ -0.13
LIG1-219ENST00000600055 GATA5Q9BWX5 397 aaPredicted RBP14.27□□□□□ -0.13
LIG1-219ENST00000600055 MRPL1Q9BYD6 325 aaKnown RBP14.27□□□□□ -0.13
LIG1-219ENST00000600055 SHCBP1LQ9BZQ2 653 aa14.27□□□□□ -0.13
LIG1-219ENST00000600055 TNFRSF12AQ9NP84 129 aa14.27□□□□□ -0.13
LIG1-219ENST00000600055 PTGFRNQ9P2B2 879 aa14.27□□□□□ -0.13
LIG1-219ENST00000600055 SLC12A4Q9UP95 1085 aa14.27□□□□□ -0.13
LIG1-219ENST00000600055 MMACHCQ9Y4U1 282 aa14.27□□□□□ -0.13
LIG1-219ENST00000600055 PCDHGB7Q9Y5F8 929 aa14.27□□□□□ -0.13
LIG1-219ENST00000600055 HEMK1Q9Y5R4 338 aaPredicted RBP14.27□□□□□ -0.13
LIG1-219ENST00000600055 KALRNO60229 2985 aa14.27□□□□□ -0.13
LIG1-219ENST00000600055 CCDC151A5D8V7 595 aa14.26□□□□□ -0.13
LIG1-219ENST00000600055 CLDN4O14493 209 aa14.26□□□□□ -0.13
LIG1-219ENST00000600055 SUV39H1O43463 412 aa14.26□□□□□ -0.13
LIG1-219ENST00000600055 TYROBPO43914 113 aa14.26□□□□□ -0.13
LIG1-219ENST00000600055 PRKRAO75569 313 aaKnown RBP14.26□□□□□ -0.13
LIG1-219ENST00000600055 SEMA3DO95025 777 aa14.26□□□□□ -0.13
LIG1-219ENST00000600055 ESRRBO95718 433 aa14.26□□□□□ -0.13
LIG1-219ENST00000600055 CHN1P15882 459 aa14.26□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms