RNA–Protein interactions for RNA: ENST00000597901.1

LIG1-215, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-215ENST00000597901 ATP5A1P25705 553 aaKnown RBP14.08□□□□□ -0.16
LIG1-215ENST00000597901 TPP2P29144 1249 aaPredicted RBP14.08□□□□□ -0.16
LIG1-215ENST00000597901 PPP2R1BP30154 601 aa14.08□□□□□ -0.16
LIG1-215ENST00000597901 CLCN2P51788 898 aa14.08□□□□□ -0.16
LIG1-215ENST00000597901 GPR143P51810 404 aa14.08□□□□□ -0.16
LIG1-215ENST00000597901 PMP22Q01453 160 aa14.08□□□□□ -0.16
LIG1-215ENST00000597901 RCN2Q14257 317 aa14.08□□□□□ -0.16
LIG1-215ENST00000597901 PFKFB4Q16877 469 aa14.08□□□□□ -0.16
LIG1-215ENST00000597901 AP5B1Q2VPB7 878 aa14.08□□□□□ -0.16
LIG1-215ENST00000597901 TMEM35AQ53FP2 167 aa14.08□□□□□ -0.16
LIG1-215ENST00000597901 DEPDC1Q5TB30 811 aa14.08□□□□□ -0.16
LIG1-215ENST00000597901 MAMDC2Q7Z304 686 aaPredicted RBP14.08□□□□□ -0.16
LIG1-215ENST00000597901 CTAGE4Q8IX94 777 aa14.08□□□□□ -0.16
LIG1-215ENST00000597901 PLD6Q8N2A8 252 aaKnown RBP14.08□□□□□ -0.16
LIG1-215ENST00000597901 ARMC10Q8N2F6 343 aa14.08□□□□□ -0.16
LIG1-215ENST00000597901 ACOT4Q8N9L9 421 aa14.08□□□□□ -0.16
LIG1-215ENST00000597901 FAM47BQ8NA70 645 aa14.08□□□□□ -0.16
LIG1-215ENST00000597901 APCDD1LQ8NCL9 501 aa14.08□□□□□ -0.16
LIG1-215ENST00000597901 SLC44A1Q8WWI5 657 aa14.08□□□□□ -0.16
LIG1-215ENST00000597901 ROGDIQ9GZN7 287 aa14.08□□□□□ -0.16
LIG1-215ENST00000597901 VPS11Q9H270 941 aa14.08□□□□□ -0.16
LIG1-215ENST00000597901 CDC42EP4Q9H3Q1 356 aaKnown RBP14.08□□□□□ -0.16
LIG1-215ENST00000597901 TRIM45Q9H8W5 580 aaPredicted RBP14.08□□□□□ -0.16
LIG1-215ENST00000597901 COPS7BQ9H9Q2 264 aaPredicted RBP14.08□□□□□ -0.16
LIG1-215ENST00000597901 PRM3Q9NNZ6 103 aa14.08□□□□□ -0.16
LIG1-215ENST00000597901 SEC14L3Q9UDX4 400 aa14.08□□□□□ -0.16
LIG1-215ENST00000597901 PPIEQ9UNP9 301 aaKnown RBP14.08□□□□□ -0.16
LIG1-215ENST00000597901 MAST4O15021 2626 aa14.08□□□□□ -0.16
LIG1-215ENST00000597901 A0A1B0GUH1 482 aa14.07□□□□□ -0.16
LIG1-215ENST00000597901 LRRC14BA6NHZ5 514 aa14.07□□□□□ -0.16
LIG1-215ENST00000597901 ACSL3O95573 720 aa14.07□□□□□ -0.16
LIG1-215ENST00000597901 GFAPP14136 432 aa14.07□□□□□ -0.16
LIG1-215ENST00000597901 EEF1DP29692 281 aaKnown RBP14.07□□□□□ -0.16
LIG1-215ENST00000597901 TRHRP34981 398 aaPredicted RBP14.07□□□□□ -0.16
LIG1-215ENST00000597901 CYB561P49447 251 aa14.07□□□□□ -0.16
LIG1-215ENST00000597901 SERPINB8P50452 374 aa14.07□□□□□ -0.16
LIG1-215ENST00000597901 HLCSP50747 726 aa14.07□□□□□ -0.16
LIG1-215ENST00000597901 ALDH18A1P54886 795 aaKnown RBP14.07□□□□□ -0.16
LIG1-215ENST00000597901 PER3P56645 1201 aa14.07□□□□□ -0.16
LIG1-215ENST00000597901 NAA30Q147X3 362 aaPredicted RBP14.07□□□□□ -0.16
LIG1-215ENST00000597901 SETDB1Q15047 1291 aa14.07□□□□□ -0.16
LIG1-215ENST00000597901 PCBP2Q15366 365 aaKnown RBP eCLIP14.07□□□□□ -0.16
LIG1-215ENST00000597901 TERF2Q15554 542 aa14.07□□□□□ -0.16
LIG1-215ENST00000597901 MAPKAPK3Q16644 382 aa14.07□□□□□ -0.16
LIG1-215ENST00000597901 LIPJQ5W064 366 aa14.07□□□□□ -0.16
LIG1-215ENST00000597901 OR4C11Q6IEV9 310 aa14.07□□□□□ -0.16
LIG1-215ENST00000597901 GRHL2Q6ISB3 625 aa14.07□□□□□ -0.16
LIG1-215ENST00000597901 KLC3Q6P597 504 aa14.07□□□□□ -0.16
LIG1-215ENST00000597901 ZNF793Q6ZN11 406 aa14.07□□□□□ -0.16
LIG1-215ENST00000597901 CLNKQ7Z7G1 428 aa14.07□□□□□ -0.16
LIG1-215ENST00000597901 ZNF227Q86WZ6 799 aa14.07□□□□□ -0.16
LIG1-215ENST00000597901 TMEM178AQ8NBL3 297 aa14.07□□□□□ -0.16
LIG1-215ENST00000597901 RELTQ969Z4 430 aa14.07□□□□□ -0.16
LIG1-215ENST00000597901 CMTM7Q96FZ5 175 aa14.07□□□□□ -0.16
LIG1-215ENST00000597901 CSF3RQ99062 836 aa14.07□□□□□ -0.16
LIG1-215ENST00000597901 MAPKAP1Q9BPZ7 522 aa14.07□□□□□ -0.16
LIG1-215ENST00000597901 ALOXE3Q9BYJ1 711 aa14.07□□□□□ -0.16
LIG1-215ENST00000597901 OR51B5Q9H339 312 aa14.07□□□□□ -0.16
LIG1-215ENST00000597901 LYRM4Q9HD34 91 aa14.07□□□□□ -0.16
LIG1-215ENST00000597901 ZNF358Q9NW07 568 aa14.07□□□□□ -0.16
LIG1-215ENST00000597901 VTI1BQ9UEU0 232 aa14.07□□□□□ -0.16
LIG1-215ENST00000597901 ADGRE2Q9UHX3 823 aa14.07□□□□□ -0.16
LIG1-215ENST00000597901 TRBV11-1A0A0K0K1C0 115 aa14.06□□□□□ -0.16
LIG1-215ENST00000597901 MYOCOSA0A1B0GUC4 107 aa14.06□□□□□ -0.16
LIG1-215ENST00000597901 ASPDHA6ND91 283 aa14.06□□□□□ -0.16
LIG1-215ENST00000597901 SAP18O00422 153 aaKnown RBP14.06□□□□□ -0.16
LIG1-215ENST00000597901 IFNA16P05015 189 aa14.06□□□□□ -0.16
LIG1-215ENST00000597901 INHBAP08476 426 aa14.06□□□□□ -0.16
LIG1-215ENST00000597901 HIST1H1TP22492 207 aaPredicted RBP14.06□□□□□ -0.16
LIG1-215ENST00000597901 COL8A1P27658 744 aa14.06□□□□□ -0.16
LIG1-215ENST00000597901 ECHS1P30084 290 aa14.06□□□□□ -0.16
LIG1-215ENST00000597901 SERPINB1P30740 379 aa14.06□□□□□ -0.16
LIG1-215ENST00000597901 C1QL3Q5VWW1 255 aa14.06□□□□□ -0.16
LIG1-215ENST00000597901 KHDRBS2Q5VWX1 349 aaKnown RBP14.06□□□□□ -0.16
LIG1-215ENST00000597901 GALNTL5Q7Z4T8 443 aa14.06□□□□□ -0.16
LIG1-215ENST00000597901 PNPLA5Q7Z6Z6 429 aaPredicted RBP14.06□□□□□ -0.16
LIG1-215ENST00000597901 TMEM132CQ8N3T6 1108 aa14.06□□□□□ -0.16
LIG1-215ENST00000597901 RNF175Q8N4F7 328 aa14.06□□□□□ -0.16
LIG1-215ENST00000597901 HUS1BQ8NHY5 278 aa14.06□□□□□ -0.16
LIG1-215ENST00000597901 THAP3Q8WTV1 239 aaPredicted RBP14.06□□□□□ -0.16
LIG1-215ENST00000597901 NCLNQ969V3 563 aa14.06□□□□□ -0.16
LIG1-215ENST00000597901 VMP1Q96GC9 406 aa14.06□□□□□ -0.16
LIG1-215ENST00000597901 FMO2Q99518 471 aa14.06□□□□□ -0.16
LIG1-215ENST00000597901 IPPKQ9H8X2 491 aa14.06□□□□□ -0.16
LIG1-215ENST00000597901 ADAP2Q9NPF8 381 aa14.06□□□□□ -0.16
LIG1-215ENST00000597901 CPSF2Q9P2I0 782 aaKnown RBP14.06□□□□□ -0.16
LIG1-215ENST00000597901 ZNF223Q9UK11 482 aaPredicted RBP14.06□□□□□ -0.16
LIG1-215ENST00000597901 FBXW2Q9UKT8 454 aa14.06□□□□□ -0.16
LIG1-215ENST00000597901 TSC22D4Q9Y3Q8 395 aa14.06□□□□□ -0.16
LIG1-215ENST00000597901 PCDHGA11Q9Y5H2 935 aa14.06□□□□□ -0.16
LIG1-215ENST00000597901 TNPO3Q9Y5L0 923 aaKnown RBP14.06□□□□□ -0.16
LIG1-215ENST00000597901 POLEQ07864 2286 aa14.05□□□□□ -0.16
LIG1-215ENST00000597901 POC1B-GALNT4F8VUJ3 575 aa14.05□□□□□ -0.16
LIG1-215ENST00000597901 FCHO1O14526 889 aa14.05□□□□□ -0.16
LIG1-215ENST00000597901 ZFAND5O76080 213 aa14.05□□□□□ -0.16
LIG1-215ENST00000597901 SCELO95171 688 aa14.05□□□□□ -0.16
LIG1-215ENST00000597901 SIX3O95343 332 aaPredicted RBP14.05□□□□□ -0.16
LIG1-215ENST00000597901 RBP1P09455 135 aa14.05□□□□□ -0.16
LIG1-215ENST00000597901 TNNI3P19429 210 aa14.05□□□□□ -0.16
LIG1-215ENST00000597901 PTX3P26022 381 aaPredicted RBP14.05□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms