RNA–Protein interactions for RNA: ENST00000586058.1

LIG3-206, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 581 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-206ENST00000586058 KPNB1Q14974 876 aaKnown RBP5.88□□□□□ -1.47
LIG3-206ENST00000586058 NR1D2Q14995 579 aa5.88□□□□□ -1.47
LIG3-206ENST00000586058 ZIC1Q15915 447 aa5.88□□□□□ -1.47
LIG3-206ENST00000586058 LPAL2Q16609 132 aa5.88□□□□□ -1.47
LIG3-206ENST00000586058 CLPPQ16740 277 aaPredicted RBP5.88□□□□□ -1.47
LIG3-206ENST00000586058 UGT8Q16880 541 aa5.88□□□□□ -1.47
LIG3-206ENST00000586058 MUM1Q2TAK8 710 aa5.88□□□□□ -1.47
LIG3-206ENST00000586058 DEFB110Q30KQ9 67 aa5.88□□□□□ -1.47
LIG3-206ENST00000586058 FAM214AQ32MH5 1076 aa5.88□□□□□ -1.47
LIG3-206ENST00000586058 ADPRMQ3LIE5 342 aa5.88□□□□□ -1.47
LIG3-206ENST00000586058 PAGE3Q5JUK9 113 aa5.88□□□□□ -1.47
LIG3-206ENST00000586058 SNAP47Q5SQN1 464 aa5.88□□□□□ -1.47
LIG3-206ENST00000586058 LRIF1Q5T3J3 769 aa5.88□□□□□ -1.47
LIG3-206ENST00000586058 NDUFAF5Q5TEU4 345 aa5.88□□□□□ -1.47
LIG3-206ENST00000586058 GARNL3Q5VVW2 1013 aa5.88□□□□□ -1.47
LIG3-206ENST00000586058 FAM219BQ5XKK7 198 aa5.88□□□□□ -1.47
LIG3-206ENST00000586058 FCRL6Q6DN72 434 aa5.88□□□□□ -1.47
LIG3-206ENST00000586058 FAM71E1Q6IPT2 247 aa5.88□□□□□ -1.47
LIG3-206ENST00000586058 ABHD17CQ6PCB6 329 aa5.88□□□□□ -1.47
LIG3-206ENST00000586058 AAGABQ6PD74 315 aa5.88□□□□□ -1.47
LIG3-206ENST00000586058 WDR74Q6RFH5 385 aaPredicted RBP5.88□□□□□ -1.47
LIG3-206ENST00000586058 ZNF621Q6ZSS3 439 aa5.88□□□□□ -1.47
LIG3-206ENST00000586058 ZNF438Q7Z4V0 828 aa5.88□□□□□ -1.47
LIG3-206ENST00000586058 PRSS42Q7Z5A4 293 aa5.88□□□□□ -1.47
LIG3-206ENST00000586058 VN1R5Q7Z5H4 357 aa5.88□□□□□ -1.47
LIG3-206ENST00000586058 SPRED1Q7Z699 444 aa5.88□□□□□ -1.47
LIG3-206ENST00000586058 RETREG3Q86VR2 466 aa5.88□□□□□ -1.47
LIG3-206ENST00000586058 ANKRD46Q86W74 232 aa5.88□□□□□ -1.47
LIG3-206ENST00000586058 C17orf82Q86X59 251 aaPredicted RBP5.88□□□□□ -1.47
LIG3-206ENST00000586058 GATAD2AQ86YP4 633 aa5.88□□□□□ -1.47
LIG3-206ENST00000586058 HPS6Q86YV9 775 aa5.88□□□□□ -1.47
LIG3-206ENST00000586058 TICAM1Q8IUC6 712 aa5.88□□□□□ -1.47
LIG3-206ENST00000586058 SLC30A8Q8IWU4 369 aa5.88□□□□□ -1.47
LIG3-206ENST00000586058 FAM20CQ8IXL6 584 aa5.88□□□□□ -1.47
LIG3-206ENST00000586058 RIMKLAQ8IXN7 391 aa5.88□□□□□ -1.47
LIG3-206ENST00000586058 MAML2Q8IZL2 1156 aaPredicted RBP5.88□□□□□ -1.47
LIG3-206ENST00000586058 EID2Q8N6I1 236 aa5.88□□□□□ -1.47
LIG3-206ENST00000586058 RNF148Q8N7C7 305 aa5.88□□□□□ -1.47
LIG3-206ENST00000586058 Q8N9G6 341 aaPredicted RBP5.88□□□□□ -1.47
LIG3-206ENST00000586058 ACOT4Q8N9L9 421 aa5.88□□□□□ -1.47
LIG3-206ENST00000586058 FAM181AQ8N9Y4 354 aa5.88□□□□□ -1.47
LIG3-206ENST00000586058 HIPK4Q8NE63 616 aa5.88□□□□□ -1.47
LIG3-206ENST00000586058 BHLHE22Q8NFJ8 381 aaPredicted RBP5.88□□□□□ -1.47
LIG3-206ENST00000586058 OR2T12Q8NG77 320 aa5.88□□□□□ -1.47
LIG3-206ENST00000586058 OR8K5Q8NH50 307 aa5.88□□□□□ -1.47
LIG3-206ENST00000586058 FBXO27Q8NI29 283 aa5.88□□□□□ -1.47
LIG3-206ENST00000586058 SAP25Q8TEE9 199 aa5.88□□□□□ -1.47
LIG3-206ENST00000586058 CREB3L4Q8TEY5 395 aa5.88□□□□□ -1.47
LIG3-206ENST00000586058 FAM162AQ96A26 154 aa5.88□□□□□ -1.47
LIG3-206ENST00000586058 EXOSC8Q96B26 276 aaKnown RBP5.88□□□□□ -1.47
LIG3-206ENST00000586058 CLPTM1LQ96KA5 538 aa5.88□□□□□ -1.47
LIG3-206ENST00000586058 EGLN2Q96KS0 407 aa5.88□□□□□ -1.47
LIG3-206ENST00000586058 TEX37Q96LM6 180 aa5.88□□□□□ -1.47
LIG3-206ENST00000586058 CCDC115Q96NT0 180 aa5.88□□□□□ -1.47
LIG3-206ENST00000586058 ANKRD27Q96NW4 1050 aa5.88□□□□□ -1.47
LIG3-206ENST00000586058 TRAPPC9Q96Q05 1148 aa5.88□□□□□ -1.47
LIG3-206ENST00000586058 GFM1Q96RP9 751 aaKnown RBP5.88□□□□□ -1.47
LIG3-206ENST00000586058 MAP3K3Q99759 626 aa5.88□□□□□ -1.47
LIG3-206ENST00000586058 SLC35A5Q9BS91 424 aa5.88□□□□□ -1.47
LIG3-206ENST00000586058 NDC1Q9BTX1 674 aa5.88□□□□□ -1.47
LIG3-206ENST00000586058 NPLQ9BXD5 320 aaPredicted RBP5.88□□□□□ -1.47
LIG3-206ENST00000586058 IRF2BPLQ9H1B7 796 aa5.88□□□□□ -1.47
LIG3-206ENST00000586058 ACTL8Q9H568 366 aa5.88□□□□□ -1.47
LIG3-206ENST00000586058 YY1AP1Q9H869 796 aa5.88□□□□□ -1.47
LIG3-206ENST00000586058 TRIM45Q9H8W5 580 aaPredicted RBP5.88□□□□□ -1.47
LIG3-206ENST00000586058 PRDM9Q9NQV7 894 aa5.88□□□□□ -1.47
LIG3-206ENST00000586058 TMEM74BQ9NUR3 256 aa5.88□□□□□ -1.47
LIG3-206ENST00000586058 TAS2R9Q9NYW1 312 aa5.88□□□□□ -1.47
LIG3-206ENST00000586058 AKAP7Q9P0M2 348 aaPredicted RBP5.88□□□□□ -1.47
LIG3-206ENST00000586058 TMEM181Q9P2C4 612 aa5.88□□□□□ -1.47
LIG3-206ENST00000586058 STOML1Q9UBI4 398 aa5.88□□□□□ -1.47
LIG3-206ENST00000586058 ABCD2Q9UBJ2 740 aa5.88□□□□□ -1.47
LIG3-206ENST00000586058 FTSJ1Q9UET6 329 aa5.88□□□□□ -1.47
LIG3-206ENST00000586058 UTS2RQ9UKP6 389 aa5.88□□□□□ -1.47
LIG3-206ENST00000586058 SRPK3Q9UPE1 567 aa5.88□□□□□ -1.47
LIG3-206ENST00000586058 POMPQ9Y244 141 aa5.88□□□□□ -1.47
LIG3-206ENST00000586058 SNX13Q9Y5W8 968 aa5.88□□□□□ -1.47
LIG3-206ENST00000586058 SNX8Q9Y5X2 465 aa5.88□□□□□ -1.47
LIG3-206ENST00000586058 EYSQ5T1H1 3165 aa5.88□□□□□ -1.47
LIG3-206ENST00000586058 RNF103-CHMP3A0A140T963 221 aa5.87□□□□□ -1.47
LIG3-206ENST00000586058 ELOVL7A1L3X0 281 aa5.87□□□□□ -1.47
LIG3-206ENST00000586058 GABRR3A8MPY1 467 aa5.87□□□□□ -1.47
LIG3-206ENST00000586058 PRR33A8MZF0 331 aa5.87□□□□□ -1.47
LIG3-206ENST00000586058 TMEM150CB9EJG8 249 aa5.87□□□□□ -1.47
LIG3-206ENST00000586058 C5orf58C9J3I9 102 aa5.87□□□□□ -1.47
LIG3-206ENST00000586058 H0Y3Z8 333 aa5.87□□□□□ -1.47
LIG3-206ENST00000586058 CLIC1O00299 241 aa5.87□□□□□ -1.47
LIG3-206ENST00000586058 NME4O00746 187 aa5.87□□□□□ -1.47
LIG3-206ENST00000586058 CLDN4O14493 209 aa5.87□□□□□ -1.47
LIG3-206ENST00000586058 ST8SIA5O15466 376 aa5.87□□□□□ -1.47
LIG3-206ENST00000586058 DYRK3O43781 588 aa5.87□□□□□ -1.47
LIG3-206ENST00000586058 MGRN1O60291 552 aa5.87□□□□□ -1.47
LIG3-206ENST00000586058 PCDHGA12O60330 932 aa5.87□□□□□ -1.47
LIG3-206ENST00000586058 FOXD2O60548 495 aaPredicted RBP5.87□□□□□ -1.47
LIG3-206ENST00000586058 GPR37L1O60883 481 aa5.87□□□□□ -1.47
LIG3-206ENST00000586058 OR2B3O76000 313 aa5.87□□□□□ -1.47
LIG3-206ENST00000586058 SLITRK5O94991 958 aa5.87□□□□□ -1.47
LIG3-206ENST00000586058 SCELO95171 688 aa5.87□□□□□ -1.47
LIG3-206ENST00000586058 PSMG1O95456 288 aa5.87□□□□□ -1.47
LIG3-206ENST00000586058 STATHP02808 62 aa5.87□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms